RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 AFAP1Q8N556 730 aa16.6■□□□□ 0.25
SCN1A-222ENST00000642141 LOC105371045A0A1W2PR82 267 aa16.59■□□□□ 0.25
SCN1A-222ENST00000642141 MYO5CQ9NQX4 1742 aa16.59■□□□□ 0.25
SCN1A-222ENST00000642141 POGZQ7Z3K3 1410 aa16.58■□□□□ 0.24
SCN1A-222ENST00000642141 CCDC18Q5T9S5 1454 aa16.58■□□□□ 0.24
SCN1A-222ENST00000642141 HECW2Q9P2P5 1572 aa16.57■□□□□ 0.24
SCN1A-222ENST00000642141 ARHGEF40Q8TER5 1519 aa16.57■□□□□ 0.24
SCN1A-222ENST00000642141 ZFYVE16Q7Z3T8 1539 aa16.56■□□□□ 0.24
SCN1A-222ENST00000642141 PTPRMP28827 1452 aa16.56■□□□□ 0.24
SCN1A-222ENST00000642141 FYCO1Q9BQS8 1478 aa16.56■□□□□ 0.24
SCN1A-222ENST00000642141 ZNF777Q9ULD5 760 aaPredicted RBP16.56■□□□□ 0.24
SCN1A-222ENST00000642141 ADAMTSL3P82987 1691 aa16.56■□□□□ 0.24
SCN1A-222ENST00000642141 ZMYM4Q5VZL5 1548 aa16.55■□□□□ 0.24
SCN1A-222ENST00000642141 BCORL1Q5H9F3 1711 aa16.53■□□□□ 0.24
SCN1A-222ENST00000642141 MADDQ8WXG6 1647 aa16.53■□□□□ 0.24
SCN1A-222ENST00000642141 SIGLEC1Q9BZZ2 1709 aa16.52■□□□□ 0.24
SCN1A-222ENST00000642141 MAGI2Q86UL8 1455 aa16.52■□□□□ 0.23
SCN1A-222ENST00000642141 CEP162Q5TB80 1403 aa16.52■□□□□ 0.23
SCN1A-222ENST00000642141 CDC42BPBQ9Y5S2 1711 aa16.5■□□□□ 0.23
SCN1A-222ENST00000642141 ATP10AO60312 1499 aa16.49■□□□□ 0.23
SCN1A-222ENST00000642141 ZNF518AQ6AHZ1 1483 aa16.49■□□□□ 0.23
SCN1A-222ENST00000642141 TRAPPC8Q9Y2L5 1435 aa16.49■□□□□ 0.23
SCN1A-222ENST00000642141 RIMS1Q86UR5 1692 aaKnown RBP16.48■□□□□ 0.23
SCN1A-222ENST00000642141 ARHGEF12Q9NZN5 1544 aa16.48■□□□□ 0.23
SCN1A-222ENST00000642141 MTUS2Q5JR59 1369 aa16.48■□□□□ 0.23
SCN1A-222ENST00000642141 HNRNPMP52272 730 aaKnown RBP eCLIP16.47■□□□□ 0.23
SCN1A-222ENST00000642141 PREX2Q70Z35 1606 aa16.47■□□□□ 0.23
SCN1A-222ENST00000642141 CFDP1Q9UEE9 299 aaPredicted RBP16.46■□□□□ 0.23
SCN1A-222ENST00000642141 C9orf84Q5VXU9 1444 aa16.45■□□□□ 0.22
SCN1A-222ENST00000642141 GPATCH8Q9UKJ3 1502 aaKnown RBP16.45■□□□□ 0.22
SCN1A-222ENST00000642141 CDC42BPAQ5VT25 1732 aa16.45■□□□□ 0.22
SCN1A-222ENST00000642141 CCNB3Q8WWL7 1395 aa16.44■□□□□ 0.22
SCN1A-222ENST00000642141 CEBPAP49715 358 aaPredicted RBP16.44■□□□□ 0.22
SCN1A-222ENST00000642141 HSPA2P54652 639 aa16.43■□□□□ 0.22
SCN1A-222ENST00000642141 ABCC1P33527 1531 aa16.43■□□□□ 0.22
SCN1A-222ENST00000642141 KDM5CP41229 1560 aa16.43■□□□□ 0.22
SCN1A-222ENST00000642141 ZNF644Q9H582 1327 aaPredicted RBP16.42■□□□□ 0.22
SCN1A-222ENST00000642141 ILDR1Q86SU0 546 aaPredicted RBP16.4■□□□□ 0.22
SCN1A-222ENST00000642141 ITSN2Q9NZM3 1697 aa16.4■□□□□ 0.22
SCN1A-222ENST00000642141 SAMD9LQ8IVG5 1584 aa16.39■□□□□ 0.21
SCN1A-222ENST00000642141 DIP2CQ9Y2E4 1556 aa16.39■□□□□ 0.21
SCN1A-222ENST00000642141 MLH3Q9UHC1 1453 aa16.39■□□□□ 0.21
SCN1A-222ENST00000642141 SPAG9O60271 1321 aaKnown RBP16.39■□□□□ 0.21
SCN1A-222ENST00000642141 SYCP2Q9BX26 1530 aa16.39■□□□□ 0.21
SCN1A-222ENST00000642141 ABCA6Q8N139 1617 aa16.38■□□□□ 0.21
SCN1A-222ENST00000642141 LMTK3Q96Q04 1460 aa16.37■□□□□ 0.21
SCN1A-222ENST00000642141 FER1L4A9Z1Z3 1794 aa16.37■□□□□ 0.21
SCN1A-222ENST00000642141 ESF1Q9H501 851 aaKnown RBP16.35■□□□□ 0.21
SCN1A-222ENST00000642141 KIDINS220Q9ULH0 1771 aa16.33■□□□□ 0.21
SCN1A-222ENST00000642141 EHBP1L1Q8N3D4 1523 aa16.33■□□□□ 0.2
SCN1A-222ENST00000642141 TIAM1Q13009 1591 aa16.32■□□□□ 0.2
SCN1A-222ENST00000642141 KIAA1107Q9UPP5 1409 aa16.31■□□□□ 0.2
SCN1A-222ENST00000642141 PLEKHH2Q8IVE3 1493 aa16.3■□□□□ 0.2
SCN1A-222ENST00000642141 VPS8Q8N3P4 1428 aa16.3■□□□□ 0.2
SCN1A-222ENST00000642141 KANK4Q5T7N3 995 aaPredicted RBP16.3■□□□□ 0.2
SCN1A-222ENST00000642141 NCOA2Q15596 1464 aa16.29■□□□□ 0.2
SCN1A-222ENST00000642141 REREQ9P2R6 1566 aa16.29■□□□□ 0.2
SCN1A-222ENST00000642141 GGT6Q6P531 493 aa16.28■□□□□ 0.2
SCN1A-222ENST00000642141 ATP7AQ04656 1500 aa16.28■□□□□ 0.2
SCN1A-222ENST00000642141 AGLP35573 1532 aa16.27■□□□□ 0.2
SCN1A-222ENST00000642141 SUPT6HQ7KZ85 1726 aaKnown RBP16.26■□□□□ 0.19
SCN1A-222ENST00000642141 MBD5Q9P267 1494 aa16.26■□□□□ 0.19
SCN1A-222ENST00000642141 A2MP01023 1474 aa16.24■□□□□ 0.19
SCN1A-222ENST00000642141 LRRC9Q6ZRR7 1453 aa16.24■□□□□ 0.19
SCN1A-222ENST00000642141 INO80Q9ULG1 1556 aaPredicted RBP16.23■□□□□ 0.19
SCN1A-222ENST00000642141 CAMSAP2Q08AD1 1489 aa16.22■□□□□ 0.19
SCN1A-222ENST00000642141 C3P01024 1663 aa16.21■□□□□ 0.19
SCN1A-222ENST00000642141 UHRF1BP1Q6BDS2 1440 aa16.2■□□□□ 0.18
SCN1A-222ENST00000642141 APLP2Q06481 763 aa16.2■□□□□ 0.18
SCN1A-222ENST00000642141 ZMYM3Q14202 1370 aa16.2■□□□□ 0.18
SCN1A-222ENST00000642141 PREX1Q8TCU6 1659 aa16.19■□□□□ 0.18
SCN1A-222ENST00000642141 KIF3BO15066 747 aa16.19■□□□□ 0.18
SCN1A-222ENST00000642141 CNTLNQ9NXG0 1405 aa16.19■□□□□ 0.18
SCN1A-222ENST00000642141 TSPY4P0CV99 314 aa16.18■□□□□ 0.18
SCN1A-222ENST00000642141 TSPY10P0CW01 314 aa16.18■□□□□ 0.18
SCN1A-222ENST00000642141 CCDC141Q6ZP82 1450 aa16.17■□□□□ 0.18
SCN1A-222ENST00000642141 PLXNC1O60486 1568 aa16.17■□□□□ 0.18
SCN1A-222ENST00000642141 DHX29Q7Z478 1369 aaKnown RBP16.16■□□□□ 0.18
SCN1A-222ENST00000642141 RSPH4AQ5TD94 716 aa16.16■□□□□ 0.18
SCN1A-222ENST00000642141 RTEL1-TNFRSF6BF6WH68 1400 aa16.16■□□□□ 0.18
SCN1A-222ENST00000642141 CLTCQ00610 1675 aaKnown RBP16.15■□□□□ 0.18
SCN1A-222ENST00000642141 FBXO41Q8TF61 875 aa16.15■□□□□ 0.18
SCN1A-222ENST00000642141 ADGBQ8N7X0 1667 aa16.14■□□□□ 0.17
SCN1A-222ENST00000642141 MAP3K1Q13233 1512 aa16.13■□□□□ 0.17
SCN1A-222ENST00000642141 SETD1BQ9UPS6 1966 aaKnown RBP16.12■□□□□ 0.17
SCN1A-222ENST00000642141 MYOM3Q5VTT5 1437 aa16.11■□□□□ 0.17
SCN1A-222ENST00000642141 FBXO31Q5XUX0 539 aaPredicted RBP16.11■□□□□ 0.17
SCN1A-222ENST00000642141 DMRT2Q9Y5R5 561 aa16.11■□□□□ 0.17
SCN1A-222ENST00000642141 CERKQ8TCT0 537 aa16.1■□□□□ 0.17
SCN1A-222ENST00000642141 PPP6R1Q9UPN7 881 aa16.1■□□□□ 0.17
SCN1A-222ENST00000642141 WASHC2CQ9Y4E1 1318 aa16.1■□□□□ 0.17
SCN1A-222ENST00000642141 STRCQ7RTU9 1775 aa16.1■□□□□ 0.17
SCN1A-222ENST00000642141 ARHGEF5Q12774 1597 aa16.09■□□□□ 0.17
SCN1A-222ENST00000642141 NCKAP5LQ9HCH0 1330 aa16.09■□□□□ 0.17
SCN1A-222ENST00000642141 NPATQ14207 1427 aa16.09■□□□□ 0.17
SCN1A-222ENST00000642141 PTPRKQ15262 1439 aa16.09■□□□□ 0.17
SCN1A-222ENST00000642141 MROH2AA6NES4 1674 aa16.08■□□□□ 0.17
SCN1A-222ENST00000642141 MIA2Q96PC5 1412 aa16.07■□□□□ 0.16
SCN1A-222ENST00000642141 RRP7BPQ9NSQ0 103 aa16.06■□□□□ 0.16
SCN1A-222ENST00000642141 CHIC2Q9UKJ5 165 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms