RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 PREX2Q70Z35 1606 aa20.57■□□□□ 0.88
GTF3A-209ENST00000640289 EFCAB2Q5VUJ9 269 aa20.57■□□□□ 0.88
GTF3A-209ENST00000640289 AKNAQ7Z591 1439 aa20.57■□□□□ 0.88
GTF3A-209ENST00000640289 CDC42BPAQ5VT25 1732 aa20.56■□□□□ 0.88
GTF3A-209ENST00000640289 CDC42BPBQ9Y5S2 1711 aa20.56■□□□□ 0.88
GTF3A-209ENST00000640289 KDM6BO15054 1643 aa20.55■□□□□ 0.88
GTF3A-209ENST00000640289 CFDP1Q9UEE9 299 aaPredicted RBP20.54■□□□□ 0.88
GTF3A-209ENST00000640289 ZNF777Q9ULD5 760 aaPredicted RBP20.54■□□□□ 0.88
GTF3A-209ENST00000640289 PHLDB1Q86UU1 1377 aa20.54■□□□□ 0.88
GTF3A-209ENST00000640289 CFAP74Q9C0B2 1584 aa20.52■□□□□ 0.88
GTF3A-209ENST00000640289 ADGRL1O94910 1474 aa20.51■□□□□ 0.87
GTF3A-209ENST00000640289 SCAPERQ9BY12 1400 aa20.5■□□□□ 0.87
GTF3A-209ENST00000640289 RAPGEF3O95398 923 aa20.49■□□□□ 0.87
GTF3A-209ENST00000640289 MYOM3Q5VTT5 1437 aa20.49■□□□□ 0.87
GTF3A-209ENST00000640289 ZNF644Q9H582 1327 aaPredicted RBP20.49■□□□□ 0.87
GTF3A-209ENST00000640289 ITSN2Q9NZM3 1697 aa20.48■□□□□ 0.87
GTF3A-209ENST00000640289 SAMD9LQ8IVG5 1584 aa20.47■□□□□ 0.87
GTF3A-209ENST00000640289 DENND4BO75064 1496 aaPredicted RBP20.47■□□□□ 0.87
GTF3A-209ENST00000640289 ARHGEF12Q9NZN5 1544 aa20.46■□□□□ 0.87
GTF3A-209ENST00000640289 ABCC1P33527 1531 aa20.45■□□□□ 0.86
GTF3A-209ENST00000640289 FRMPD1Q5SYB0 1578 aa20.43■□□□□ 0.86
GTF3A-209ENST00000640289 HNRNPMP52272 730 aaKnown RBP eCLIP20.43■□□□□ 0.86
GTF3A-209ENST00000640289 POGZQ7Z3K3 1410 aa20.43■□□□□ 0.86
GTF3A-209ENST00000640289 SYCP2Q9BX26 1530 aa20.43■□□□□ 0.86
GTF3A-209ENST00000640289 MIA2Q96PC5 1412 aa20.42■□□□□ 0.86
GTF3A-209ENST00000640289 TRAPPC8Q9Y2L5 1435 aa20.42■□□□□ 0.86
GTF3A-209ENST00000640289 CAMSAP2Q08AD1 1489 aa20.42■□□□□ 0.86
GTF3A-209ENST00000640289 AFAP1Q8N556 730 aa20.41■□□□□ 0.86
GTF3A-209ENST00000640289 FGD6Q6ZV73 1430 aa20.4■□□□□ 0.86
GTF3A-209ENST00000640289 PLEKHH2Q8IVE3 1493 aa20.39■□□□□ 0.85
GTF3A-209ENST00000640289 KIAA1107Q9UPP5 1409 aa20.39■□□□□ 0.85
GTF3A-209ENST00000640289 RICTORQ6R327 1708 aa20.38■□□□□ 0.85
GTF3A-209ENST00000640289 ZNF518AQ6AHZ1 1483 aa20.37■□□□□ 0.85
GTF3A-209ENST00000640289 MBD5Q9P267 1494 aa20.37■□□□□ 0.85
GTF3A-209ENST00000640289 PTPN23Q9H3S7 1636 aa20.35■□□□□ 0.85
GTF3A-209ENST00000640289 TCOF1Q13428 1488 aaKnown RBP20.33■□□□□ 0.85
GTF3A-209ENST00000640289 KDM5CP41229 1560 aa20.33■□□□□ 0.84
GTF3A-209ENST00000640289 ZMYM4Q5VZL5 1548 aa20.32■□□□□ 0.84
GTF3A-209ENST00000640289 FAM50AQ14320 339 aaKnown RBP20.31■□□□□ 0.84
GTF3A-209ENST00000640289 YEATS2Q9ULM3 1422 aa20.3■□□□□ 0.84
GTF3A-209ENST00000640289 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
GTF3A-209ENST00000640289 CCDC141Q6ZP82 1450 aa20.29■□□□□ 0.84
GTF3A-209ENST00000640289 ARHGEF5Q12774 1597 aa20.28■□□□□ 0.84
GTF3A-209ENST00000640289 SPAG9O60271 1321 aaKnown RBP20.27■□□□□ 0.84
GTF3A-209ENST00000640289 ZFYVE16Q7Z3T8 1539 aa20.27■□□□□ 0.84
GTF3A-209ENST00000640289 HECW2Q9P2P5 1572 aa20.27■□□□□ 0.84
GTF3A-209ENST00000640289 MAGI2Q86UL8 1455 aa20.27■□□□□ 0.84
GTF3A-209ENST00000640289 MLH3Q9UHC1 1453 aa20.27■□□□□ 0.84
GTF3A-209ENST00000640289 RSPH4AQ5TD94 716 aa20.27■□□□□ 0.84
GTF3A-209ENST00000640289 ARHGEF40Q8TER5 1519 aa20.25■□□□□ 0.83
GTF3A-209ENST00000640289 ABCC5O15440 1437 aa20.24■□□□□ 0.83
GTF3A-209ENST00000640289 RRBP1Q9P2E9 1410 aaKnown RBP20.24■□□□□ 0.83
GTF3A-209ENST00000640289 TSPY4P0CV99 314 aa20.23■□□□□ 0.83
GTF3A-209ENST00000640289 TSPY10P0CW01 314 aa20.23■□□□□ 0.83
GTF3A-209ENST00000640289 DAPK1P53355 1430 aa20.23■□□□□ 0.83
GTF3A-209ENST00000640289 ATP7AQ04656 1500 aa20.22■□□□□ 0.83
GTF3A-209ENST00000640289 INO80Q9ULG1 1556 aaPredicted RBP20.22■□□□□ 0.83
GTF3A-209ENST00000640289 KIDINS220Q9ULH0 1771 aa20.22■□□□□ 0.83
GTF3A-209ENST00000640289 DNMT1P26358 1616 aaKnown RBP20.21■□□□□ 0.83
GTF3A-209ENST00000640289 DIP2CQ9Y2E4 1556 aa20.21■□□□□ 0.83
GTF3A-209ENST00000640289 ABCA6Q8N139 1617 aa20.2■□□□□ 0.82
GTF3A-209ENST00000640289 RTEL1-TNFRSF6BF6WH68 1400 aa20.19■□□□□ 0.82
GTF3A-209ENST00000640289 C9orf84Q5VXU9 1444 aa20.19■□□□□ 0.82
GTF3A-209ENST00000640289 ATP10AO60312 1499 aa20.19■□□□□ 0.82
GTF3A-209ENST00000640289 CHIC2Q9UKJ5 165 aa20.18■□□□□ 0.82
GTF3A-209ENST00000640289 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.18■□□□□ 0.82
GTF3A-209ENST00000640289 ITGAEP38570 1179 aa20.17■□□□□ 0.82
GTF3A-209ENST00000640289 PTPRKQ15262 1439 aa20.16■□□□□ 0.82
GTF3A-209ENST00000640289 SHANK2Q9UPX8 1470 aa20.16■□□□□ 0.82
GTF3A-209ENST00000640289 MAST1Q9Y2H9 1570 aa20.16■□□□□ 0.82
GTF3A-209ENST00000640289 CROCC2H7BZ55 1655 aa20.16■□□□□ 0.82
GTF3A-209ENST00000640289 ARID4BQ4LE39 1312 aaPredicted RBP20.14■□□□□ 0.81
GTF3A-209ENST00000640289 SIGLEC1Q9BZZ2 1709 aa20.13■□□□□ 0.81
GTF3A-209ENST00000640289 A2MP01023 1474 aa20.11■□□□□ 0.81
GTF3A-209ENST00000640289 RRP7BPQ9NSQ0 103 aa20.1■□□□□ 0.81
GTF3A-209ENST00000640289 REREQ9P2R6 1566 aa20.09■□□□□ 0.81
GTF3A-209ENST00000640289 DHX29Q7Z478 1369 aaKnown RBP20.08■□□□□ 0.81
GTF3A-209ENST00000640289 PLXNC1O60486 1568 aa20.08■□□□□ 0.81
GTF3A-209ENST00000640289 ADGBQ8N7X0 1667 aa20.08■□□□□ 0.81
GTF3A-209ENST00000640289 ANKRD30AQ9BXX3 1397 aa20.08■□□□□ 0.8
GTF3A-209ENST00000640289 ADGRL2O95490 1459 aa20.07■□□□□ 0.8
GTF3A-209ENST00000640289 MLECQ14165 292 aa20.07■□□□□ 0.8
GTF3A-209ENST00000640289 NCOA1Q15788 1441 aa20.07■□□□□ 0.8
GTF3A-209ENST00000640289 KIF15Q9NS87 1388 aa20.07■□□□□ 0.8
GTF3A-209ENST00000640289 AGLP35573 1532 aa20.05■□□□□ 0.8
GTF3A-209ENST00000640289 KDM4FA0A1W2PPD8 638 aa20.03■□□□□ 0.8
GTF3A-209ENST00000640289 DUOX2Q9NRD8 1548 aa20.02■□□□□ 0.8
GTF3A-209ENST00000640289 ROCK1Q13464 1354 aa20.01■□□□□ 0.79
GTF3A-209ENST00000640289 KIF3BO15066 747 aa20.01■□□□□ 0.79
GTF3A-209ENST00000640289 BCORL1Q5H9F3 1711 aa20.01■□□□□ 0.79
GTF3A-209ENST00000640289 GGT6Q6P531 493 aa19.98■□□□□ 0.79
GTF3A-209ENST00000640289 ERBINQ96RT1 1412 aa19.97■□□□□ 0.79
GTF3A-209ENST00000640289 ADAMTSL3P82987 1691 aa19.96■□□□□ 0.79
GTF3A-209ENST00000640289 ANKRD50Q9ULJ7 1429 aa19.95■□□□□ 0.78
GTF3A-209ENST00000640289 MADDQ8WXG6 1647 aa19.94■□□□□ 0.78
GTF3A-209ENST00000640289 EIF2AK4Q9P2K8 1649 aaKnown RBP19.93■□□□□ 0.78
GTF3A-209ENST00000640289 NAIPQ13075 1403 aa19.92■□□□□ 0.78
GTF3A-209ENST00000640289 HFM1A2PYH4 1435 aa19.9■□□□□ 0.78
GTF3A-209ENST00000640289 MROH1Q8NDA8 1641 aa19.88■□□□□ 0.77
GTF3A-209ENST00000640289 RNF17Q9BXT8 1623 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms