RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MYO5CQ9NQX4 1742 aa27.66■■■□□ 2.02
CLN3-254ENST00000637050 DNMT1P26358 1616 aaKnown RBP27.63■■■□□ 2.01
CLN3-254ENST00000637050 ABCA9Q8IUA7 1624 aa27.62■■■□□ 2.01
CLN3-254ENST00000637050 PLCH2O75038 1416 aa27.62■■■□□ 2.01
CLN3-254ENST00000637050 MAPKBP1O60336 1514 aa27.61■■■□□ 2.01
CLN3-254ENST00000637050 ZNF777Q9ULD5 760 aaPredicted RBP27.61■■■□□ 2.01
CLN3-254ENST00000637050 DAPK1P53355 1430 aa27.6■■■□□ 2.01
CLN3-254ENST00000637050 ARHGAP5Q13017 1502 aa27.59■■■□□ 2.01
CLN3-254ENST00000637050 ABCC5O15440 1437 aa27.59■■■□□ 2.01
CLN3-254ENST00000637050 ARAP3Q8WWN8 1544 aa27.58■■■□□ 2.01
CLN3-254ENST00000637050 SAMD9LQ8IVG5 1584 aa27.58■■■□□ 2.01
CLN3-254ENST00000637050 SETD5Q9C0A6 1442 aa27.57■■■□□ 2
CLN3-254ENST00000637050 HFM1A2PYH4 1435 aa27.54■■■□□ 2
CLN3-254ENST00000637050 AKNAQ7Z591 1439 aa27.52■■■□□ 2
CLN3-254ENST00000637050 ARHGEF5Q12774 1597 aa27.51■■■□□ 2
CLN3-254ENST00000637050 RAB3GAP2Q9H2M9 1393 aa27.51■■□□□ 1.99
CLN3-254ENST00000637050 CROCC2H7BZ55 1655 aa27.5■■□□□ 1.99
CLN3-254ENST00000637050 MBD5Q9P267 1494 aa27.5■■□□□ 1.99
CLN3-254ENST00000637050 EFCAB2Q5VUJ9 269 aa27.5■■□□□ 1.99
CLN3-254ENST00000637050 PLEKHH2Q8IVE3 1493 aa27.5■■□□□ 1.99
CLN3-254ENST00000637050 HRCP23327 699 aa27.49■■□□□ 1.99
CLN3-254ENST00000637050 ROCK1Q13464 1354 aa27.49■■□□□ 1.99
CLN3-254ENST00000637050 NAIPQ13075 1403 aa27.48■■□□□ 1.99
CLN3-254ENST00000637050 KIAA1107Q9UPP5 1409 aa27.48■■□□□ 1.99
CLN3-254ENST00000637050 CHIC2Q9UKJ5 165 aa27.48■■□□□ 1.99
CLN3-254ENST00000637050 CCER1Q8TC90 406 aaPredicted RBP27.47■■□□□ 1.99
CLN3-254ENST00000637050 SHANK2Q9UPX8 1470 aa27.46■■□□□ 1.99
CLN3-254ENST00000637050 HNRNPMP52272 730 aaKnown RBP eCLIP27.45■■□□□ 1.98
CLN3-254ENST00000637050 SYCP2Q9BX26 1530 aa27.45■■□□□ 1.98
CLN3-254ENST00000637050 GCC2Q8IWJ2 1684 aa27.44■■□□□ 1.98
CLN3-254ENST00000637050 RSPH4AQ5TD94 716 aa27.44■■□□□ 1.98
CLN3-254ENST00000637050 ADGRL2O95490 1459 aa27.42■■□□□ 1.98
CLN3-254ENST00000637050 CCDC141Q6ZP82 1450 aa27.42■■□□□ 1.98
CLN3-254ENST00000637050 ABCC1P33527 1531 aa27.42■■□□□ 1.98
CLN3-254ENST00000637050 ADGBQ8N7X0 1667 aa27.42■■□□□ 1.98
CLN3-254ENST00000637050 FANCAO15360 1455 aa27.41■■□□□ 1.98
CLN3-254ENST00000637050 RRP7BPQ9NSQ0 103 aa27.41■■□□□ 1.98
CLN3-254ENST00000637050 CD109Q6YHK3 1445 aa27.41■■□□□ 1.98
CLN3-254ENST00000637050 GLI2P10070 1586 aa27.4■■□□□ 1.98
CLN3-254ENST00000637050 ARHGEF12Q9NZN5 1544 aa27.4■■□□□ 1.98
CLN3-254ENST00000637050 NCOA1Q15788 1441 aa27.38■■□□□ 1.97
CLN3-254ENST00000637050 C9orf84Q5VXU9 1444 aa27.38■■□□□ 1.97
CLN3-254ENST00000637050 DHX57Q6P158 1386 aaKnown RBP27.37■■□□□ 1.97
CLN3-254ENST00000637050 TSPY4P0CV99 314 aa27.36■■□□□ 1.97
CLN3-254ENST00000637050 TSPY10P0CW01 314 aa27.36■■□□□ 1.97
CLN3-254ENST00000637050 ANKRD30AQ9BXX3 1397 aa27.34■■□□□ 1.97
CLN3-254ENST00000637050 MAP3K4Q9Y6R4 1608 aa27.34■■□□□ 1.97
CLN3-254ENST00000637050 DIP2BQ9P265 1576 aa27.34■■□□□ 1.97
CLN3-254ENST00000637050 MAST1Q9Y2H9 1570 aa27.34■■□□□ 1.97
CLN3-254ENST00000637050 CFAP74Q9C0B2 1584 aa27.32■■□□□ 1.96
CLN3-254ENST00000637050 ZEB1P37275 1124 aaPredicted RBP27.32■■□□□ 1.96
CLN3-254ENST00000637050 KDM6BO15054 1643 aa27.29■■□□□ 1.96
CLN3-254ENST00000637050 TRAPPC8Q9Y2L5 1435 aa27.29■■□□□ 1.96
CLN3-254ENST00000637050 ADGRL1O94910 1474 aa27.29■■□□□ 1.96
CLN3-254ENST00000637050 SCAPERQ9BY12 1400 aa27.25■■□□□ 1.95
CLN3-254ENST00000637050 NEO1Q92859 1461 aa27.25■■□□□ 1.95
CLN3-254ENST00000637050 FAM69CQ0P6D2 419 aa27.24■■□□□ 1.95
CLN3-254ENST00000637050 CLSPNQ9HAW4 1339 aa27.24■■□□□ 1.95
CLN3-254ENST00000637050 PLXNC1O60486 1568 aa27.22■■□□□ 1.95
CLN3-254ENST00000637050 DNAJC5Q9H3Z4 198 aa27.22■■□□□ 1.95
CLN3-254ENST00000637050 ACIN1Q9UKV3 1341 aaKnown RBP27.22■■□□□ 1.95
CLN3-254ENST00000637050 KIF15Q9NS87 1388 aa27.21■■□□□ 1.95
CLN3-254ENST00000637050 ANKRD50Q9ULJ7 1429 aa27.2■■□□□ 1.94
CLN3-254ENST00000637050 AFAP1Q8N556 730 aa27.19■■□□□ 1.94
CLN3-254ENST00000637050 RTEL1-TNFRSF6BF6WH68 1400 aa27.19■■□□□ 1.94
CLN3-254ENST00000637050 SPAG9O60271 1321 aaKnown RBP27.16■■□□□ 1.94
CLN3-254ENST00000637050 KIF13AQ9H1H9 1805 aa27.16■■□□□ 1.94
CLN3-254ENST00000637050 ZFYVE16Q7Z3T8 1539 aa27.16■■□□□ 1.94
CLN3-254ENST00000637050 ZNF518AQ6AHZ1 1483 aa27.15■■□□□ 1.94
CLN3-254ENST00000637050 INO80Q9ULG1 1556 aaPredicted RBP27.14■■□□□ 1.93
CLN3-254ENST00000637050 POGZQ7Z3K3 1410 aa27.13■■□□□ 1.93
CLN3-254ENST00000637050 PPRC1Q5VV67 1664 aaKnown RBP27.13■■□□□ 1.93
CLN3-254ENST00000637050 ATP7AQ04656 1500 aa27.1■■□□□ 1.93
CLN3-254ENST00000637050 DUOX2Q9NRD8 1548 aa27.1■■□□□ 1.93
CLN3-254ENST00000637050 KDM5CP41229 1560 aa27.1■■□□□ 1.93
CLN3-254ENST00000637050 TRIM52Q96A61 297 aa27.1■■□□□ 1.93
CLN3-254ENST00000637050 TEX14Q8IWB6 1497 aa27.09■■□□□ 1.93
CLN3-254ENST00000637050 DENND4BO75064 1496 aaPredicted RBP27.08■■□□□ 1.92
CLN3-254ENST00000637050 TSPOAP1O95153 1857 aa27.06■■□□□ 1.92
CLN3-254ENST00000637050 ERBINQ96RT1 1412 aa27.05■■□□□ 1.92
CLN3-254ENST00000637050 KIDINS220Q9ULH0 1771 aa27.04■■□□□ 1.92
CLN3-254ENST00000637050 MLH3Q9UHC1 1453 aa27.03■■□□□ 1.92
CLN3-254ENST00000637050 MPHOSPH9Q99550 1183 aa27.01■■□□□ 1.92
CLN3-254ENST00000637050 RICTORQ6R327 1708 aa27.01■■□□□ 1.91
CLN3-254ENST00000637050 PZPP20742 1482 aa27■■□□□ 1.91
CLN3-254ENST00000637050 KDM5DQ9BY66 1539 aa27■■□□□ 1.91
CLN3-254ENST00000637050 HECW2Q9P2P5 1572 aa27■■□□□ 1.91
CLN3-254ENST00000637050 RAPGEF3O95398 923 aa26.98■■□□□ 1.91
CLN3-254ENST00000637050 UNC13BO14795 1591 aa26.97■■□□□ 1.91
CLN3-254ENST00000637050 FRMPD1Q5SYB0 1578 aa26.96■■□□□ 1.91
CLN3-254ENST00000637050 MYT1LQ9UL68 1186 aa26.95■■□□□ 1.91
CLN3-254ENST00000637050 NUP155O75694 1391 aa26.94■■□□□ 1.9
CLN3-254ENST00000637050 SLC4A1APQ9BWU0 796 aaKnown RBP26.94■■□□□ 1.9
CLN3-254ENST00000637050 DHX29Q7Z478 1369 aaKnown RBP26.93■■□□□ 1.9
CLN3-254ENST00000637050 MAGI2Q86UL8 1455 aa26.92■■□□□ 1.9
CLN3-254ENST00000637050 ZMYM4Q5VZL5 1548 aa26.91■■□□□ 1.9
CLN3-254ENST00000637050 EIF2AK4Q9P2K8 1649 aaKnown RBP26.9■■□□□ 1.9
CLN3-254ENST00000637050 ABCA6Q8N139 1617 aa26.89■■□□□ 1.9
CLN3-254ENST00000637050 A2MP01023 1474 aa26.88■■□□□ 1.89
CLN3-254ENST00000637050 SIN3AQ96ST3 1273 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms