RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 PREX2Q70Z35 1606 aa21.41■■□□□ 1.02
CLN3-242ENST00000635958 ARAP3Q8WWN8 1544 aa21.4■■□□□ 1.02
CLN3-242ENST00000635958 MYO5CQ9NQX4 1742 aa21.39■■□□□ 1.02
CLN3-242ENST00000635958 CDC42BPBQ9Y5S2 1711 aa21.39■■□□□ 1.02
CLN3-242ENST00000635958 ZNF644Q9H582 1327 aaPredicted RBP21.37■■□□□ 1.01
CLN3-242ENST00000635958 GLI2P10070 1586 aa21.37■■□□□ 1.01
CLN3-242ENST00000635958 EFCAB2Q5VUJ9 269 aa21.34■■□□□ 1.01
CLN3-242ENST00000635958 CAMSAP2Q08AD1 1489 aa21.34■■□□□ 1.01
CLN3-242ENST00000635958 ARHGAP5Q13017 1502 aa21.34■■□□□ 1.01
CLN3-242ENST00000635958 ZNF777Q9ULD5 760 aaPredicted RBP21.32■■□□□ 1
CLN3-242ENST00000635958 CD109Q6YHK3 1445 aa21.32■■□□□ 1
CLN3-242ENST00000635958 DIP2BQ9P265 1576 aa21.31■■□□□ 1
CLN3-242ENST00000635958 SAMD9LQ8IVG5 1584 aa21.3■■□□□ 1
CLN3-242ENST00000635958 KIAA1107Q9UPP5 1409 aa21.3■■□□□ 1
CLN3-242ENST00000635958 PLEKHH2Q8IVE3 1493 aa21.29■■□□□ 1
CLN3-242ENST00000635958 ITGAEP38570 1179 aa21.28■■□□□ 1
CLN3-242ENST00000635958 FAM69CQ0P6D2 419 aa21.28■■□□□ 1
CLN3-242ENST00000635958 PTPRKQ15262 1439 aa21.28■■□□□ 1
CLN3-242ENST00000635958 MAP3K4Q9Y6R4 1608 aa21.27■■□□□ 1
CLN3-242ENST00000635958 RSPH4AQ5TD94 716 aa21.27■■□□□ 1
CLN3-242ENST00000635958 ABCC5O15440 1437 aa21.27■■□□□ 1
CLN3-242ENST00000635958 MBD5Q9P267 1494 aa21.27■■□□□ 1
CLN3-242ENST00000635958 FANCAO15360 1455 aa21.26■□□□□ 0.99
CLN3-242ENST00000635958 DNMT1P26358 1616 aaKnown RBP21.26■□□□□ 0.99
CLN3-242ENST00000635958 DAPK1P53355 1430 aa21.26■□□□□ 0.99
CLN3-242ENST00000635958 ARHGEF5Q12774 1597 aa21.25■□□□□ 0.99
CLN3-242ENST00000635958 HNRNPMP52272 730 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLN3-242ENST00000635958 ZEB1P37275 1124 aaPredicted RBP21.22■□□□□ 0.99
CLN3-242ENST00000635958 KIF13AQ9H1H9 1805 aa21.22■□□□□ 0.99
CLN3-242ENST00000635958 ABCC1P33527 1531 aa21.21■□□□□ 0.99
CLN3-242ENST00000635958 ARHGEF12Q9NZN5 1544 aa21.2■□□□□ 0.98
CLN3-242ENST00000635958 SYCP2Q9BX26 1530 aa21.2■□□□□ 0.98
CLN3-242ENST00000635958 NEO1Q92859 1461 aa21.2■□□□□ 0.98
CLN3-242ENST00000635958 AKNAQ7Z591 1439 aa21.2■□□□□ 0.98
CLN3-242ENST00000635958 CFAP74Q9C0B2 1584 aa21.19■□□□□ 0.98
CLN3-242ENST00000635958 CCDC141Q6ZP82 1450 aa21.18■□□□□ 0.98
CLN3-242ENST00000635958 ROCK1Q13464 1354 aa21.18■□□□□ 0.98
CLN3-242ENST00000635958 SHANK2Q9UPX8 1470 aa21.18■□□□□ 0.98
CLN3-242ENST00000635958 TSPY4P0CV99 314 aa21.16■□□□□ 0.98
CLN3-242ENST00000635958 TSPY10P0CW01 314 aa21.16■□□□□ 0.98
CLN3-242ENST00000635958 CROCC2H7BZ55 1655 aa21.16■□□□□ 0.98
CLN3-242ENST00000635958 ADGRL1O94910 1474 aa21.15■□□□□ 0.98
CLN3-242ENST00000635958 CHIC2Q9UKJ5 165 aa21.15■□□□□ 0.98
CLN3-242ENST00000635958 HFM1A2PYH4 1435 aa21.15■□□□□ 0.98
CLN3-242ENST00000635958 SCAPERQ9BY12 1400 aa21.15■□□□□ 0.98
CLN3-242ENST00000635958 ADGRL2O95490 1459 aa21.14■□□□□ 0.98
CLN3-242ENST00000635958 SETD5Q9C0A6 1442 aa21.13■□□□□ 0.97
CLN3-242ENST00000635958 TRAPPC8Q9Y2L5 1435 aa21.13■□□□□ 0.97
CLN3-242ENST00000635958 PPRC1Q5VV67 1664 aaKnown RBP21.12■□□□□ 0.97
CLN3-242ENST00000635958 NCOA1Q15788 1441 aa21.12■□□□□ 0.97
CLN3-242ENST00000635958 C9orf84Q5VXU9 1444 aa21.12■□□□□ 0.97
CLN3-242ENST00000635958 TEX14Q8IWB6 1497 aa21.12■□□□□ 0.97
CLN3-242ENST00000635958 NAIPQ13075 1403 aa21.12■□□□□ 0.97
CLN3-242ENST00000635958 MAST1Q9Y2H9 1570 aa21.11■□□□□ 0.97
CLN3-242ENST00000635958 ANKRD30AQ9BXX3 1397 aa21.09■□□□□ 0.97
CLN3-242ENST00000635958 AFAP1Q8N556 730 aa21.08■□□□□ 0.97
CLN3-242ENST00000635958 RRP7BPQ9NSQ0 103 aa21.08■□□□□ 0.97
CLN3-242ENST00000635958 ADGBQ8N7X0 1667 aa21.08■□□□□ 0.97
CLN3-242ENST00000635958 RTEL1-TNFRSF6BF6WH68 1400 aa21.07■□□□□ 0.96
CLN3-242ENST00000635958 TSPOAP1O95153 1857 aa21.07■□□□□ 0.96
CLN3-242ENST00000635958 RAB3GAP2Q9H2M9 1393 aa21.07■□□□□ 0.96
CLN3-242ENST00000635958 POGZQ7Z3K3 1410 aa21.05■□□□□ 0.96
CLN3-242ENST00000635958 ZNF518AQ6AHZ1 1483 aa21.05■□□□□ 0.96
CLN3-242ENST00000635958 DENND4BO75064 1496 aaPredicted RBP21.05■□□□□ 0.96
CLN3-242ENST00000635958 GCC2Q8IWJ2 1684 aa21.04■□□□□ 0.96
CLN3-242ENST00000635958 SPAG9O60271 1321 aaKnown RBP21.04■□□□□ 0.96
CLN3-242ENST00000635958 KDM5CP41229 1560 aa21.02■□□□□ 0.95
CLN3-242ENST00000635958 PLXNC1O60486 1568 aa21.01■□□□□ 0.95
CLN3-242ENST00000635958 KIF15Q9NS87 1388 aa21■□□□□ 0.95
CLN3-242ENST00000635958 ACIN1Q9UKV3 1341 aaKnown RBP20.99■□□□□ 0.95
CLN3-242ENST00000635958 ZFYVE16Q7Z3T8 1539 aa20.99■□□□□ 0.95
CLN3-242ENST00000635958 MLH3Q9UHC1 1453 aa20.99■□□□□ 0.95
CLN3-242ENST00000635958 INO80Q9ULG1 1556 aaPredicted RBP20.99■□□□□ 0.95
CLN3-242ENST00000635958 RAPGEF3O95398 923 aa20.98■□□□□ 0.95
CLN3-242ENST00000635958 RICTORQ6R327 1708 aa20.98■□□□□ 0.95
CLN3-242ENST00000635958 ATP7AQ04656 1500 aa20.97■□□□□ 0.95
CLN3-242ENST00000635958 ANKRD50Q9ULJ7 1429 aa20.97■□□□□ 0.95
CLN3-242ENST00000635958 KDM6BO15054 1643 aa20.95■□□□□ 0.94
CLN3-242ENST00000635958 KIDINS220Q9ULH0 1771 aa20.94■□□□□ 0.94
CLN3-242ENST00000635958 DUOX2Q9NRD8 1548 aa20.93■□□□□ 0.94
CLN3-242ENST00000635958 FRMPD1Q5SYB0 1578 aa20.93■□□□□ 0.94
CLN3-242ENST00000635958 COL17A1Q9UMD9 1497 aaPredicted RBP20.93■□□□□ 0.94
CLN3-242ENST00000635958 HECW2Q9P2P5 1572 aa20.91■□□□□ 0.94
CLN3-242ENST00000635958 ZMYM4Q5VZL5 1548 aa20.91■□□□□ 0.94
CLN3-242ENST00000635958 DHX57Q6P158 1386 aaKnown RBP20.9■□□□□ 0.94
CLN3-242ENST00000635958 ERBINQ96RT1 1412 aa20.9■□□□□ 0.94
CLN3-242ENST00000635958 MAGI2Q86UL8 1455 aa20.9■□□□□ 0.94
CLN3-242ENST00000635958 DHX29Q7Z478 1369 aaKnown RBP20.88■□□□□ 0.93
CLN3-242ENST00000635958 CCER1Q8TC90 406 aaPredicted RBP20.88■□□□□ 0.93
CLN3-242ENST00000635958 MYT1LQ9UL68 1186 aa20.88■□□□□ 0.93
CLN3-242ENST00000635958 A2MP01023 1474 aa20.83■□□□□ 0.92
CLN3-242ENST00000635958 ABCA6Q8N139 1617 aa20.82■□□□□ 0.92
CLN3-242ENST00000635958 CLSPNQ9HAW4 1339 aa20.82■□□□□ 0.92
CLN3-242ENST00000635958 TRIM52Q96A61 297 aa20.82■□□□□ 0.92
CLN3-242ENST00000635958 YEATS2Q9ULM3 1422 aa20.82■□□□□ 0.92
CLN3-242ENST00000635958 DIP2CQ9Y2E4 1556 aa20.81■□□□□ 0.92
CLN3-242ENST00000635958 EIF2AK4Q9P2K8 1649 aaKnown RBP20.79■□□□□ 0.92
CLN3-242ENST00000635958 KDM5DQ9BY66 1539 aa20.79■□□□□ 0.92
CLN3-242ENST00000635958 UNC13BO14795 1591 aa20.78■□□□□ 0.92
CLN3-242ENST00000635958 MPHOSPH9Q99550 1183 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms