RNA–Protein interactions for RNA: ENST00000635590.1

SMARCA2-243, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 3

Gene SMARCA2, Length 1,843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-243ENST00000635590 FBXO22Q8NEZ5 403 aa12.17□□□□□ -0.46
SMARCA2-243ENST00000635590 IGSF3O75054 1194 aa12.16□□□□□ -0.46
SMARCA2-243ENST00000635590 PDE4AP27815 886 aa12.14□□□□□ -0.47
SMARCA2-243ENST00000635590 MTMR7Q9Y216 660 aa12.14□□□□□ -0.47
SMARCA2-243ENST00000635590 CAMK2BQ13554 666 aa12.13□□□□□ -0.47
SMARCA2-243ENST00000635590 PCDHB8Q9UN66 801 aa12.11□□□□□ -0.47
SMARCA2-243ENST00000635590 PCDHB13Q9Y5F0 798 aa12.11□□□□□ -0.47
SMARCA2-243ENST00000635590 NLRP6P59044 892 aa12.11□□□□□ -0.47
SMARCA2-243ENST00000635590 DDX27Q96GQ7 796 aaKnown RBP12.11□□□□□ -0.47
SMARCA2-243ENST00000635590 SHROOM4Q9ULL8 1493 aa12.1□□□□□ -0.47
SMARCA2-243ENST00000635590 TMCO4Q5TGY1 634 aa12.1□□□□□ -0.47
SMARCA2-243ENST00000635590 GOPCQ9HD26 462 aa12.1□□□□□ -0.47
SMARCA2-243ENST00000635590 ZNF777Q9ULD5 760 aaPredicted RBP12.1□□□□□ -0.47
SMARCA2-243ENST00000635590 CRISPLD2Q9H0B8 497 aa12.09□□□□□ -0.47
SMARCA2-243ENST00000635590 PSEN1P49768 467 aa12.09□□□□□ -0.47
SMARCA2-243ENST00000635590 GPR37O15354 613 aa12.08□□□□□ -0.48
SMARCA2-243ENST00000635590 PARP9Q8IXQ6 854 aa12.07□□□□□ -0.48
SMARCA2-243ENST00000635590 SPDYE1Q8NFV5 336 aaPredicted RBP12.07□□□□□ -0.48
SMARCA2-243ENST00000635590 PHF8Q9UPP1 1060 aa12.07□□□□□ -0.48
SMARCA2-243ENST00000635590 PRR29P0C7W0 189 aa12.07□□□□□ -0.48
SMARCA2-243ENST00000635590 MFAP1P55081 439 aaKnown RBP12.06□□□□□ -0.48
SMARCA2-243ENST00000635590 MCM6Q14566 821 aa12.06□□□□□ -0.48
SMARCA2-243ENST00000635590 SERPINA10Q9UK55 444 aa12.06□□□□□ -0.48
SMARCA2-243ENST00000635590 EFCAB3Q8N7B9 438 aa12.05□□□□□ -0.48
SMARCA2-243ENST00000635590 AMHR2Q16671 573 aa12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 FOXD4L5Q5VV16 416 aaPredicted RBP12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 FOXD4L4Q8WXT5 416 aaPredicted RBP12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 ZNF428Q96B54 188 aa12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 CCDC97Q96F63 343 aaPredicted RBP12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 GZF1Q9H116 711 aaPredicted RBP12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 MINK1Q8N4C8 1332 aaPredicted RBP12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 PROSER2Q86WR7 435 aaPredicted RBP12.04□□□□□ -0.48
SMARCA2-243ENST00000635590 CCDC102AQ96A19 550 aa12.03□□□□□ -0.48
SMARCA2-243ENST00000635590 RBM25P49756 843 aaKnown RBP12.02□□□□□ -0.48
SMARCA2-243ENST00000635590 RETREG2Q8NC44 543 aa12.02□□□□□ -0.48
SMARCA2-243ENST00000635590 SOX12O15370 315 aa12.02□□□□□ -0.49
SMARCA2-243ENST00000635590 FNBP4Q8N3X1 1017 aaPredicted RBP12□□□□□ -0.49
SMARCA2-243ENST00000635590 CLEC11AQ9Y240 323 aa12□□□□□ -0.49
SMARCA2-243ENST00000635590 MAP2K5Q13163 448 aa11.98□□□□□ -0.49
SMARCA2-243ENST00000635590 PCMTD1Q96MG8 357 aaPredicted RBP11.98□□□□□ -0.49
SMARCA2-243ENST00000635590 IRF5Q13568 498 aa11.97□□□□□ -0.49
SMARCA2-243ENST00000635590 IRF6O14896 467 aa11.97□□□□□ -0.49
SMARCA2-243ENST00000635590 POM121Q96HA1 1249 aa11.96□□□□□ -0.49
SMARCA2-243ENST00000635590 TSPYL2Q9H2G4 693 aaPredicted RBP11.96□□□□□ -0.49
SMARCA2-243ENST00000635590 CABP2Q9NPB3 220 aa11.96□□□□□ -0.49
SMARCA2-243ENST00000635590 ZNF579Q8NAF0 562 aaKnown RBP11.95□□□□□ -0.5
SMARCA2-243ENST00000635590 DPYSL4O14531 572 aa11.9□□□□□ -0.5
SMARCA2-243ENST00000635590 PLSCR2Q9NRY7 297 aa11.9□□□□□ -0.5
SMARCA2-243ENST00000635590 TTLL12Q14166 644 aaPredicted RBP11.89□□□□□ -0.51
SMARCA2-243ENST00000635590 PDIA6Q15084 440 aa11.89□□□□□ -0.51
SMARCA2-243ENST00000635590 FBXW7Q969H0 707 aa11.89□□□□□ -0.51
SMARCA2-243ENST00000635590 MS4A4AQ96JQ5 239 aa11.89□□□□□ -0.51
SMARCA2-243ENST00000635590 SPDYE16A6NNV3 312 aaPredicted RBP11.88□□□□□ -0.51
SMARCA2-243ENST00000635590 MS4A1P11836 297 aa11.88□□□□□ -0.51
SMARCA2-243ENST00000635590 E9PSI1 815 aa11.86□□□□□ -0.51
SMARCA2-243ENST00000635590 PELP1Q8IZL8 1130 aaKnown RBP11.86□□□□□ -0.51
SMARCA2-243ENST00000635590 PPP1R15BQ5SWA1 713 aa11.85□□□□□ -0.51
SMARCA2-243ENST00000635590 GIGYF2Q6Y7W6 1299 aaKnown RBP11.85□□□□□ -0.51
SMARCA2-243ENST00000635590 NUTM2FA1L443 756 aa11.84□□□□□ -0.51
SMARCA2-243ENST00000635590 SH3D19Q5HYK7 790 aa11.84□□□□□ -0.51
SMARCA2-243ENST00000635590 EMILIN3Q9NT22 766 aa11.84□□□□□ -0.51
SMARCA2-243ENST00000635590 GNPATO15228 680 aa11.83□□□□□ -0.52
SMARCA2-243ENST00000635590 FECHP22830 423 aa11.82□□□□□ -0.52
SMARCA2-243ENST00000635590 OXER1Q8TDS5 423 aa11.81□□□□□ -0.52
SMARCA2-243ENST00000635590 CCDC61Q9Y6R9 512 aa11.81□□□□□ -0.52
SMARCA2-243ENST00000635590 IFNL1Q8IU54 200 aa11.8□□□□□ -0.52
SMARCA2-243ENST00000635590 RB1CC1Q8TDY2 1594 aa11.8□□□□□ -0.52
SMARCA2-243ENST00000635590 COG6Q9Y2V7 657 aa11.79□□□□□ -0.52
SMARCA2-243ENST00000635590 PPP1R15AO75807 674 aaPredicted RBP11.78□□□□□ -0.52
SMARCA2-243ENST00000635590 REPIN1Q9BWE0 567 aaKnown RBP11.78□□□□□ -0.52
SMARCA2-243ENST00000635590 HMGB1P09429 215 aaKnown RBP11.77□□□□□ -0.52
SMARCA2-243ENST00000635590 HIC1Q14526 733 aa11.76□□□□□ -0.53
SMARCA2-243ENST00000635590 ZNF330Q9Y3S2 320 aaPredicted RBP11.76□□□□□ -0.53
SMARCA2-243ENST00000635590 AKT1S1Q96B36 256 aa11.76□□□□□ -0.53
SMARCA2-243ENST00000635590 GPHNQ9NQX3 736 aaPredicted RBP11.76□□□□□ -0.53
SMARCA2-243ENST00000635590 SKIV2LQ15477 1246 aaKnown RBP11.74□□□□□ -0.53
SMARCA2-243ENST00000635590 GRXCR2A6NFK2 248 aa11.74□□□□□ -0.53
SMARCA2-243ENST00000635590 HSP90B1P14625 803 aaKnown RBP11.74□□□□□ -0.53
SMARCA2-243ENST00000635590 SPDYE5A6NIY4 337 aa11.73□□□□□ -0.53
SMARCA2-243ENST00000635590 PATL2C9JE40 543 aaKnown RBP11.73□□□□□ -0.53
SMARCA2-243ENST00000635590 PDE4CQ08493 712 aa11.72□□□□□ -0.53
SMARCA2-243ENST00000635590 ACIN1Q9UKV3 1341 aaKnown RBP11.72□□□□□ -0.53
SMARCA2-243ENST00000635590 PROCA1Q8NCQ7 364 aaPredicted RBP11.72□□□□□ -0.53
SMARCA2-243ENST00000635590 FCHSD2O94868 740 aa11.71□□□□□ -0.54
SMARCA2-243ENST00000635590 CDK11BP21127 795 aaKnown RBP11.71□□□□□ -0.54
SMARCA2-243ENST00000635590 CDK11AQ9UQ88 783 aaPredicted RBP11.71□□□□□ -0.54
SMARCA2-243ENST00000635590 REM2Q8IYK8 340 aaPredicted RBP11.7□□□□□ -0.54
SMARCA2-243ENST00000635590 KCNA1Q09470 495 aa11.69□□□□□ -0.54
SMARCA2-243ENST00000635590 PUS7Q96PZ0 661 aaKnown RBP11.69□□□□□ -0.54
SMARCA2-243ENST00000635590 OSBPP22059 807 aa11.68□□□□□ -0.54
SMARCA2-243ENST00000635590 AMOTL2Q9Y2J4 779 aa11.68□□□□□ -0.54
SMARCA2-243ENST00000635590 DSG2Q14126 1118 aa11.67□□□□□ -0.54
SMARCA2-243ENST00000635590 ATP1B4Q9UN42 357 aaPredicted RBP11.67□□□□□ -0.54
SMARCA2-243ENST00000635590 NACADO15069 1562 aa11.66□□□□□ -0.54
SMARCA2-243ENST00000635590 BRD1O95696 1058 aa11.66□□□□□ -0.54
SMARCA2-243ENST00000635590 SNRKQ9NRH2 765 aa11.66□□□□□ -0.54
SMARCA2-243ENST00000635590 USP35Q9P2H5 1018 aa11.66□□□□□ -0.54
SMARCA2-243ENST00000635590 MAP3K13O43283 966 aa11.65□□□□□ -0.54
SMARCA2-243ENST00000635590 TMUB1Q9BVT8 246 aa11.65□□□□□ -0.54
SMARCA2-243ENST00000635590 CALR3Q96L12 384 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms