RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 YEATS2Q9ULM3 1422 aa25.32■■□□□ 1.64
LINC00339-209ENST00000635450 POGZQ7Z3K3 1410 aa25.31■■□□□ 1.64
LINC00339-209ENST00000635450 CCDC18Q5T9S5 1454 aa25.31■■□□□ 1.64
LINC00339-209ENST00000635450 FYCO1Q9BQS8 1478 aa25.31■■□□□ 1.64
LINC00339-209ENST00000635450 ZFYVE16Q7Z3T8 1539 aa25.31■■□□□ 1.64
LINC00339-209ENST00000635450 PREX2Q70Z35 1606 aa25.29■■□□□ 1.64
LINC00339-209ENST00000635450 SCAPERQ9BY12 1400 aa25.29■■□□□ 1.64
LINC00339-209ENST00000635450 ARHGAP5Q13017 1502 aa25.28■■□□□ 1.64
LINC00339-209ENST00000635450 CDC42BPAQ5VT25 1732 aa25.26■■□□□ 1.63
LINC00339-209ENST00000635450 CDK11AQ9UQ88 783 aaPredicted RBP25.26■■□□□ 1.63
LINC00339-209ENST00000635450 PTPRMP28827 1452 aa25.25■■□□□ 1.63
LINC00339-209ENST00000635450 RIMS1Q86UR5 1692 aaKnown RBP25.25■■□□□ 1.63
LINC00339-209ENST00000635450 KDM5CP41229 1560 aa25.2■■□□□ 1.62
LINC00339-209ENST00000635450 MAGI2Q86UL8 1455 aa25.2■■□□□ 1.62
LINC00339-209ENST00000635450 ITSN2Q9NZM3 1697 aa25.2■■□□□ 1.62
LINC00339-209ENST00000635450 ARID4BQ4LE39 1312 aaPredicted RBP25.19■■□□□ 1.62
LINC00339-209ENST00000635450 ABCC1P33527 1531 aa25.18■■□□□ 1.62
LINC00339-209ENST00000635450 EFCAB2Q5VUJ9 269 aa25.18■■□□□ 1.62
LINC00339-209ENST00000635450 ARHGEF12Q9NZN5 1544 aa25.16■■□□□ 1.62
LINC00339-209ENST00000635450 FER1L4A9Z1Z3 1794 aa25.15■■□□□ 1.62
LINC00339-209ENST00000635450 ZNF518AQ6AHZ1 1483 aa25.15■■□□□ 1.62
LINC00339-209ENST00000635450 ABCA6Q8N139 1617 aa25.14■■□□□ 1.61
LINC00339-209ENST00000635450 CEP162Q5TB80 1403 aa25.13■■□□□ 1.61
LINC00339-209ENST00000635450 DIP2CQ9Y2E4 1556 aa25.13■■□□□ 1.61
LINC00339-209ENST00000635450 SAMD9LQ8IVG5 1584 aa25.11■■□□□ 1.61
LINC00339-209ENST00000635450 ATP10AO60312 1499 aa25.09■■□□□ 1.61
LINC00339-209ENST00000635450 AFAP1Q8N556 730 aa25.09■■□□□ 1.61
LINC00339-209ENST00000635450 C9orf84Q5VXU9 1444 aa25.09■■□□□ 1.61
LINC00339-209ENST00000635450 TRAPPC8Q9Y2L5 1435 aa25.09■■□□□ 1.61
LINC00339-209ENST00000635450 GPATCH8Q9UKJ3 1502 aaKnown RBP25.06■■□□□ 1.6
LINC00339-209ENST00000635450 KIDINS220Q9ULH0 1771 aa25.05■■□□□ 1.6
LINC00339-209ENST00000635450 SYCP2Q9BX26 1530 aa25.05■■□□□ 1.6
LINC00339-209ENST00000635450 MLECQ14165 292 aa25.04■■□□□ 1.6
LINC00339-209ENST00000635450 LMTK3Q96Q04 1460 aa25.02■■□□□ 1.6
LINC00339-209ENST00000635450 MLH3Q9UHC1 1453 aa25.01■■□□□ 1.59
LINC00339-209ENST00000635450 TIAM1Q13009 1591 aa25.01■■□□□ 1.59
LINC00339-209ENST00000635450 REREQ9P2R6 1566 aa25.01■■□□□ 1.59
LINC00339-209ENST00000635450 EHBP1L1Q8N3D4 1523 aa25■■□□□ 1.59
LINC00339-209ENST00000635450 PLPPR3Q6T4P5 718 aa24.98■■□□□ 1.59
LINC00339-209ENST00000635450 MTUS2Q5JR59 1369 aa24.96■■□□□ 1.59
LINC00339-209ENST00000635450 LOC105371045A0A1W2PR82 267 aa24.95■■□□□ 1.58
LINC00339-209ENST00000635450 ZNF777Q9ULD5 760 aaPredicted RBP24.94■■□□□ 1.58
LINC00339-209ENST00000635450 INO80Q9ULG1 1556 aaPredicted RBP24.93■■□□□ 1.58
LINC00339-209ENST00000635450 MYT1LQ9UL68 1186 aa24.92■■□□□ 1.58
LINC00339-209ENST00000635450 CCNB3Q8WWL7 1395 aa24.92■■□□□ 1.58
LINC00339-209ENST00000635450 AGLP35573 1532 aa24.89■■□□□ 1.57
LINC00339-209ENST00000635450 ATP7AQ04656 1500 aa24.88■■□□□ 1.57
LINC00339-209ENST00000635450 SUPT6HQ7KZ85 1726 aaKnown RBP24.87■■□□□ 1.57
LINC00339-209ENST00000635450 HNRNPMP52272 730 aaKnown RBP eCLIP24.87■■□□□ 1.57
LINC00339-209ENST00000635450 C3P01024 1663 aa24.87■■□□□ 1.57
LINC00339-209ENST00000635450 PREX1Q8TCU6 1659 aa24.87■■□□□ 1.57
LINC00339-209ENST00000635450 CFDP1Q9UEE9 299 aaPredicted RBP24.86■■□□□ 1.57
LINC00339-209ENST00000635450 KIAA1107Q9UPP5 1409 aa24.85■■□□□ 1.57
LINC00339-209ENST00000635450 VPS8Q8N3P4 1428 aa24.84■■□□□ 1.57
LINC00339-209ENST00000635450 PLXNC1O60486 1568 aa24.84■■□□□ 1.57
LINC00339-209ENST00000635450 ZNF644Q9H582 1327 aaPredicted RBP24.84■■□□□ 1.57
LINC00339-209ENST00000635450 NCOA2Q15596 1464 aa24.83■■□□□ 1.57
LINC00339-209ENST00000635450 PLEKHH2Q8IVE3 1493 aa24.83■■□□□ 1.57
LINC00339-209ENST00000635450 CEBPAP49715 358 aaPredicted RBP24.83■■□□□ 1.57
LINC00339-209ENST00000635450 HSPA2P54652 639 aa24.83■■□□□ 1.57
LINC00339-209ENST00000635450 ILDR1Q86SU0 546 aaPredicted RBP24.8■■□□□ 1.56
LINC00339-209ENST00000635450 SPAG9O60271 1321 aaKnown RBP24.8■■□□□ 1.56
LINC00339-209ENST00000635450 MBD5Q9P267 1494 aa24.79■■□□□ 1.56
LINC00339-209ENST00000635450 ADGBQ8N7X0 1667 aa24.78■■□□□ 1.56
LINC00339-209ENST00000635450 CAMSAP2Q08AD1 1489 aa24.76■■□□□ 1.55
LINC00339-209ENST00000635450 LRRC9Q6ZRR7 1453 aa24.74■■□□□ 1.55
LINC00339-209ENST00000635450 CLTCQ00610 1675 aaKnown RBP24.73■■□□□ 1.55
LINC00339-209ENST00000635450 A2MP01023 1474 aa24.73■■□□□ 1.55
LINC00339-209ENST00000635450 MROH2AA6NES4 1674 aa24.72■■□□□ 1.55
LINC00339-209ENST00000635450 SETD1BQ9UPS6 1966 aaKnown RBP24.7■■□□□ 1.54
LINC00339-209ENST00000635450 STRCQ7RTU9 1775 aa24.7■■□□□ 1.54
LINC00339-209ENST00000635450 CCDC141Q6ZP82 1450 aa24.67■■□□□ 1.54
LINC00339-209ENST00000635450 KANK4Q5T7N3 995 aaPredicted RBP24.65■■□□□ 1.54
LINC00339-209ENST00000635450 UHRF1BP1Q6BDS2 1440 aa24.65■■□□□ 1.54
LINC00339-209ENST00000635450 CNTLNQ9NXG0 1405 aa24.65■■□□□ 1.54
LINC00339-209ENST00000635450 MAP3K1Q13233 1512 aa24.65■■□□□ 1.54
LINC00339-209ENST00000635450 ARHGEF5Q12774 1597 aa24.64■■□□□ 1.54
LINC00339-209ENST00000635450 RTEL1-TNFRSF6BF6WH68 1400 aa24.61■■□□□ 1.53
LINC00339-209ENST00000635450 ESF1Q9H501 851 aaKnown RBP24.59■■□□□ 1.53
LINC00339-209ENST00000635450 MYO3AQ8NEV4 1616 aa24.58■■□□□ 1.53
LINC00339-209ENST00000635450 ZMYM3Q14202 1370 aa24.55■■□□□ 1.52
LINC00339-209ENST00000635450 MYOM3Q5VTT5 1437 aa24.55■■□□□ 1.52
LINC00339-209ENST00000635450 ZNF142P52746 1687 aaPredicted RBP24.55■■□□□ 1.52
LINC00339-209ENST00000635450 GGT6Q6P531 493 aa24.54■■□□□ 1.52
LINC00339-209ENST00000635450 DHX29Q7Z478 1369 aaKnown RBP24.54■■□□□ 1.52
LINC00339-209ENST00000635450 NPATQ14207 1427 aa24.53■■□□□ 1.52
LINC00339-209ENST00000635450 MAST1Q9Y2H9 1570 aa24.53■■□□□ 1.52
LINC00339-209ENST00000635450 PTPRKQ15262 1439 aa24.52■■□□□ 1.52
LINC00339-209ENST00000635450 CROCC2H7BZ55 1655 aa24.5■■□□□ 1.51
LINC00339-209ENST00000635450 CAMSAP1Q5T5Y3 1602 aa24.48■■□□□ 1.51
LINC00339-209ENST00000635450 CEP170BQ9Y4F5 1589 aaPredicted RBP24.48■■□□□ 1.51
LINC00339-209ENST00000635450 RNF17Q9BXT8 1623 aaKnown RBP24.46■■□□□ 1.51
LINC00339-209ENST00000635450 PTPN23Q9H3S7 1636 aa24.46■■□□□ 1.51
LINC00339-209ENST00000635450 KDM5DQ9BY66 1539 aa24.46■■□□□ 1.51
LINC00339-209ENST00000635450 NCOA1Q15788 1441 aa24.46■■□□□ 1.51
LINC00339-209ENST00000635450 MIA2Q96PC5 1412 aa24.46■■□□□ 1.51
LINC00339-209ENST00000635450 FBXO41Q8TF61 875 aa24.46■■□□□ 1.51
LINC00339-209ENST00000635450 KIF3BO15066 747 aa24.44■■□□□ 1.5
LINC00339-209ENST00000635450 APLP2Q06481 763 aa24.44■■□□□ 1.5
LINC00339-209ENST00000635450 MROH1Q8NDA8 1641 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms