RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SAMD9Q5K651 1589 aa15.06■□□□□ 0
VPS11-208ENST00000621676 RAPGEF3O95398 923 aa15.05■□□□□ 0
VPS11-208ENST00000621676 UGGT2Q9NYU1 1516 aa15.05■□□□□ 0
VPS11-208ENST00000621676 GGT6Q6P531 493 aa15.05■□□□□ -0
VPS11-208ENST00000621676 L3MBTL2Q969R5 705 aa15.04■□□□□ -0
VPS11-208ENST00000621676 UACAQ9BZF9 1416 aa15.04■□□□□ -0
VPS11-208ENST00000621676 CHD1O14646 1710 aa15.04■□□□□ -0
VPS11-208ENST00000621676 TROQ12816 1431 aaPredicted RBP15.03■□□□□ -0
VPS11-208ENST00000621676 NUTM2DQ5VT03 806 aaPredicted RBP15.03■□□□□ -0
VPS11-208ENST00000621676 NUP155O75694 1391 aa15.03■□□□□ -0
VPS11-208ENST00000621676 LRRIQ1Q96JM4 1722 aa15.02■□□□□ -0
VPS11-208ENST00000621676 NAIPQ13075 1403 aa15.01□□□□□ -0.01
VPS11-208ENST00000621676 HECW1Q76N89 1606 aa15□□□□□ -0.01
VPS11-208ENST00000621676 EFCAB2Q5VUJ9 269 aa14.99□□□□□ -0.01
VPS11-208ENST00000621676 KIF14Q15058 1648 aa14.99□□□□□ -0.01
VPS11-208ENST00000621676 KIF3BO15066 747 aa14.99□□□□□ -0.01
VPS11-208ENST00000621676 TRHP20396 242 aaPredicted RBP14.99□□□□□ -0.01
VPS11-208ENST00000621676 ABCC5O15440 1437 aa14.98□□□□□ -0.01
VPS11-208ENST00000621676 RAPGEF6Q8TEU7 1601 aa14.98□□□□□ -0.01
VPS11-208ENST00000621676 FAM69CQ0P6D2 419 aa14.97□□□□□ -0.01
VPS11-208ENST00000621676 GPATCH8Q9UKJ3 1502 aaKnown RBP14.97□□□□□ -0.01
VPS11-208ENST00000621676 PPP1R15AO75807 674 aaPredicted RBP14.97□□□□□ -0.01
VPS11-208ENST00000621676 DCAF11Q8TEB1 546 aa14.97□□□□□ -0.01
VPS11-208ENST00000621676 EHBP1L1Q8N3D4 1523 aa14.96□□□□□ -0.02
VPS11-208ENST00000621676 PTPN23Q9H3S7 1636 aa14.95□□□□□ -0.02
VPS11-208ENST00000621676 SUPT6HQ7KZ85 1726 aaKnown RBP14.94□□□□□ -0.02
VPS11-208ENST00000621676 DAPK1P53355 1430 aa14.94□□□□□ -0.02
VPS11-208ENST00000621676 SPAG9O60271 1321 aaKnown RBP14.92□□□□□ -0.02
VPS11-208ENST00000621676 NBPF8Q3BBV2 869 aa14.91□□□□□ -0.02
VPS11-208ENST00000621676 KIF15Q9NS87 1388 aa14.91□□□□□ -0.02
VPS11-208ENST00000621676 KDM6BO15054 1643 aa14.91□□□□□ -0.02
VPS11-208ENST00000621676 ARHGAP5Q13017 1502 aa14.91□□□□□ -0.02
VPS11-208ENST00000621676 CFAP43Q8NDM7 1665 aa14.9□□□□□ -0.02
VPS11-208ENST00000621676 CAMSAP2Q08AD1 1489 aa14.9□□□□□ -0.02
VPS11-208ENST00000621676 MAP3K1Q13233 1512 aa14.9□□□□□ -0.02
VPS11-208ENST00000621676 ANKRD30AQ9BXX3 1397 aa14.89□□□□□ -0.03
VPS11-208ENST00000621676 HFM1A2PYH4 1435 aa14.89□□□□□ -0.03
VPS11-208ENST00000621676 SCAPERQ9BY12 1400 aa14.89□□□□□ -0.03
VPS11-208ENST00000621676 MAPKBP1O60336 1514 aa14.88□□□□□ -0.03
VPS11-208ENST00000621676 HSPA5P11021 654 aaKnown RBP14.87□□□□□ -0.03
VPS11-208ENST00000621676 ANKRD50Q9ULJ7 1429 aa14.87□□□□□ -0.03
VPS11-208ENST00000621676 C9orf84Q5VXU9 1444 aa14.85□□□□□ -0.03
VPS11-208ENST00000621676 NCOA1Q15788 1441 aa14.84□□□□□ -0.03
VPS11-208ENST00000621676 TRAPPC8Q9Y2L5 1435 aa14.83□□□□□ -0.04
VPS11-208ENST00000621676 ARID4BQ4LE39 1312 aaPredicted RBP14.82□□□□□ -0.04
VPS11-208ENST00000621676 C11orf95C9JLR9 678 aaPredicted RBP14.82□□□□□ -0.04
VPS11-208ENST00000621676 MIA2Q96PC5 1412 aa14.82□□□□□ -0.04
VPS11-208ENST00000621676 ASXL2Q76L83 1435 aa14.81□□□□□ -0.04
VPS11-208ENST00000621676 SAFB2Q14151 953 aaKnown RBP eCLIP14.81□□□□□ -0.04
VPS11-208ENST00000621676 NBPF1Q3BBV0 1214 aa14.81□□□□□ -0.04
VPS11-208ENST00000621676 CARD11Q9BXL7 1154 aa14.79□□□□□ -0.04
VPS11-208ENST00000621676 CLSPNQ9HAW4 1339 aa14.79□□□□□ -0.04
VPS11-208ENST00000621676 ABCA8O94911 1581 aa14.79□□□□□ -0.04
VPS11-208ENST00000621676 PLEKHH2Q8IVE3 1493 aa14.78□□□□□ -0.04
VPS11-208ENST00000621676 EIF4G2P78344 907 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS11-208ENST00000621676 SALL2Q9Y467 1007 aaPredicted RBP14.77□□□□□ -0.04
VPS11-208ENST00000621676 SYCP2Q9BX26 1530 aa14.77□□□□□ -0.04
VPS11-208ENST00000621676 AKNAQ7Z591 1439 aa14.75□□□□□ -0.05
VPS11-208ENST00000621676 GTF3C3Q9Y5Q9 886 aa14.74□□□□□ -0.05
VPS11-208ENST00000621676 FAM9BQ8IZU0 186 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 BCANQ96GW7 911 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 ABCC2Q92887 1545 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 WASHC2CQ9Y4E1 1318 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 TTC37Q6PGP7 1564 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 ST20-MTHFSA0A0A6YYL1 179 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 CD109Q6YHK3 1445 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.73□□□□□ -0.05
VPS11-208ENST00000621676 ARHGEF12Q9NZN5 1544 aa14.73□□□□□ -0.05
VPS11-208ENST00000621676 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.72□□□□□ -0.05
VPS11-208ENST00000621676 ABCC10Q5T3U5 1492 aa14.72□□□□□ -0.05
VPS11-208ENST00000621676 ANP32CO43423 234 aa14.72□□□□□ -0.05
VPS11-208ENST00000621676 STAG3Q9UJ98 1225 aa14.71□□□□□ -0.06
VPS11-208ENST00000621676 ANKRD30BQ9BXX2 1392 aa14.7□□□□□ -0.06
VPS11-208ENST00000621676 FANCAO15360 1455 aa14.7□□□□□ -0.06
VPS11-208ENST00000621676 DENND4BO75064 1496 aaPredicted RBP14.7□□□□□ -0.06
VPS11-208ENST00000621676 SCAF1Q9H7N4 1312 aaKnown RBP14.69□□□□□ -0.06
VPS11-208ENST00000621676 FBXO31Q5XUX0 539 aaPredicted RBP14.69□□□□□ -0.06
VPS11-208ENST00000621676 STK26Q9P289 416 aa14.69□□□□□ -0.06
VPS11-208ENST00000621676 CENPBP07199 599 aaPredicted RBP14.69□□□□□ -0.06
VPS11-208ENST00000621676 CCDC184Q52MB2 194 aa14.68□□□□□ -0.06
VPS11-208ENST00000621676 TMEM132EQ6IEE7 984 aa14.68□□□□□ -0.06
VPS11-208ENST00000621676 TCOF1Q13428 1488 aaKnown RBP14.68□□□□□ -0.06
VPS11-208ENST00000621676 PLCH2O75038 1416 aa14.67□□□□□ -0.06
VPS11-208ENST00000621676 MBD5Q9P267 1494 aa14.67□□□□□ -0.06
VPS11-208ENST00000621676 WASHC2AQ641Q2 1341 aa14.67□□□□□ -0.06
VPS11-208ENST00000621676 PLEKHG5O94827 1062 aa14.67□□□□□ -0.06
VPS11-208ENST00000621676 ADGRL1O94910 1474 aa14.66□□□□□ -0.06
VPS11-208ENST00000621676 WDR7Q9Y4E6 1490 aa14.66□□□□□ -0.06
VPS11-208ENST00000621676 RSPH4AQ5TD94 716 aa14.66□□□□□ -0.06
VPS11-208ENST00000621676 CFAP65Q6ZU64 1925 aaKnown RBP14.65□□□□□ -0.06
VPS11-208ENST00000621676 CLASP1Q7Z460 1538 aa14.65□□□□□ -0.06
VPS11-208ENST00000621676 CCDC141Q6ZP82 1450 aa14.65□□□□□ -0.06
VPS11-208ENST00000621676 CEBPAP49715 358 aaPredicted RBP14.64□□□□□ -0.07
VPS11-208ENST00000621676 ACIN1Q9UKV3 1341 aaKnown RBP14.64□□□□□ -0.07
VPS11-208ENST00000621676 ESF1Q9H501 851 aaKnown RBP14.63□□□□□ -0.07
VPS11-208ENST00000621676 ZCCHC11Q5TAX3 1644 aaKnown RBP14.63□□□□□ -0.07
VPS11-208ENST00000621676 ADCY10Q96PN6 1610 aa14.63□□□□□ -0.07
VPS11-208ENST00000621676 CFAP70Q5T0N1 1121 aa14.63□□□□□ -0.07
VPS11-208ENST00000621676 CC2D1BQ5T0F9 858 aaKnown RBP14.62□□□□□ -0.07
VPS11-208ENST00000621676 ROCK1Q13464 1354 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms