RNA–Protein interactions for RNA: ENST00000621526.4

CPNE3-211, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 279 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-211ENST00000621526 SETD1BQ9UPS6 1966 aaKnown RBP4.2□□□□□ -1.74
CPNE3-211ENST00000621526 UPF1Q92900 1129 aaKnown RBP eCLIP4.19□□□□□ -1.74
CPNE3-211ENST00000621526 ARHGEF12Q9NZN5 1544 aa4.19□□□□□ -1.74
CPNE3-211ENST00000621526 RAPGEF2Q9Y4G8 1499 aa4.18□□□□□ -1.74
CPNE3-211ENST00000621526 STRCQ7RTU9 1775 aa4.18□□□□□ -1.74
CPNE3-211ENST00000621526 ARID3CA6NKF2 412 aa4.18□□□□□ -1.74
CPNE3-211ENST00000621526 SCAPERQ9BY12 1400 aa4.18□□□□□ -1.74
CPNE3-211ENST00000621526 ABCA8O94911 1581 aa4.18□□□□□ -1.74
CPNE3-211ENST00000621526 MED1Q15648 1581 aaPredicted RBP4.18□□□□□ -1.74
CPNE3-211ENST00000621526 ZMYM3Q14202 1370 aa4.17□□□□□ -1.74
CPNE3-211ENST00000621526 FOXD1Q16676 465 aa4.17□□□□□ -1.74
CPNE3-211ENST00000621526 AFAP1Q8N556 730 aa4.17□□□□□ -1.74
CPNE3-211ENST00000621526 NPATQ14207 1427 aa4.17□□□□□ -1.74
CPNE3-211ENST00000621526 C9orf84Q5VXU9 1444 aa4.17□□□□□ -1.74
CPNE3-211ENST00000621526 CNTLNQ9NXG0 1405 aa4.17□□□□□ -1.74
CPNE3-211ENST00000621526 TTC37Q6PGP7 1564 aa4.17□□□□□ -1.74
CPNE3-211ENST00000621526 RIMS1Q86UR5 1692 aaKnown RBP4.16□□□□□ -1.74
CPNE3-211ENST00000621526 PLCH2O75038 1416 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 SUPT5HO00267 1087 aaKnown RBP4.16□□□□□ -1.74
CPNE3-211ENST00000621526 ANKLE2Q86XL3 938 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 P3H3Q8IVL6 736 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 SRCAPQ6ZRS2 3230 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 ABCA9Q8IUA7 1624 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 PLA2R1Q13018 1463 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 EFCAB5A4FU69 1503 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 ZFYVE16Q7Z3T8 1539 aa4.16□□□□□ -1.74
CPNE3-211ENST00000621526 KIAA0556O60303 1618 aa4.15□□□□□ -1.74
CPNE3-211ENST00000621526 THEMISQ8N1K5 641 aaPredicted RBP4.15□□□□□ -1.75
CPNE3-211ENST00000621526 MYT1LQ9UL68 1186 aa4.15□□□□□ -1.75
CPNE3-211ENST00000621526 ZMYM4Q5VZL5 1548 aa4.15□□□□□ -1.75
CPNE3-211ENST00000621526 ARHGEF40Q8TER5 1519 aa4.15□□□□□ -1.75
CPNE3-211ENST00000621526 FRMPD1Q5SYB0 1578 aa4.14□□□□□ -1.75
CPNE3-211ENST00000621526 TCOF1Q13428 1488 aaKnown RBP4.14□□□□□ -1.75
CPNE3-211ENST00000621526 SHANK2Q9UPX8 1470 aa4.14□□□□□ -1.75
CPNE3-211ENST00000621526 CDK11AQ9UQ88 783 aaPredicted RBP4.14□□□□□ -1.75
CPNE3-211ENST00000621526 CPS1P31327 1500 aa4.14□□□□□ -1.75
CPNE3-211ENST00000621526 PREX1Q8TCU6 1659 aa4.13□□□□□ -1.75
CPNE3-211ENST00000621526 ZNF772Q68DY9 489 aaPredicted RBP4.13□□□□□ -1.75
CPNE3-211ENST00000621526 FAM135BQ49AJ0 1406 aa4.12□□□□□ -1.75
CPNE3-211ENST00000621526 AGLP35573 1532 aa4.12□□□□□ -1.75
CPNE3-211ENST00000621526 MLH3Q9UHC1 1453 aa4.11□□□□□ -1.75
CPNE3-211ENST00000621526 CAMSAP1Q5T5Y3 1602 aa4.11□□□□□ -1.75
CPNE3-211ENST00000621526 HECW1Q76N89 1606 aa4.11□□□□□ -1.75
CPNE3-211ENST00000621526 RXRBP28702 533 aa4.11□□□□□ -1.75
CPNE3-211ENST00000621526 ZRANB1Q9UGI0 708 aa4.11□□□□□ -1.75
CPNE3-211ENST00000621526 CCDC125Q86Z20 511 aa4.1□□□□□ -1.75
CPNE3-211ENST00000621526 ZNF518AQ6AHZ1 1483 aa4.1□□□□□ -1.75
CPNE3-211ENST00000621526 GGT6Q6P531 493 aa4.09□□□□□ -1.75
CPNE3-211ENST00000621526 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.09□□□□□ -1.75
CPNE3-211ENST00000621526 RICTORQ6R327 1708 aa4.09□□□□□ -1.76
CPNE3-211ENST00000621526 FER1L4A9Z1Z3 1794 aa4.09□□□□□ -1.76
CPNE3-211ENST00000621526 NUP153P49790 1475 aaKnown RBP4.08□□□□□ -1.76
CPNE3-211ENST00000621526 IFFO2Q5TF58 517 aa4.08□□□□□ -1.76
CPNE3-211ENST00000621526 SPATA31A6Q5VVP1 1343 aa4.08□□□□□ -1.76
CPNE3-211ENST00000621526 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.08□□□□□ -1.76
CPNE3-211ENST00000621526 SENP3Q9H4L4 574 aaPredicted RBP4.08□□□□□ -1.76
CPNE3-211ENST00000621526 REREQ9P2R6 1566 aa4.08□□□□□ -1.76
CPNE3-211ENST00000621526 A2ML1A8K2U0 1454 aa4.07□□□□□ -1.76
CPNE3-211ENST00000621526 MED14O60244 1454 aa4.07□□□□□ -1.76
CPNE3-211ENST00000621526 PRXQ9BXM0 1461 aa4.07□□□□□ -1.76
CPNE3-211ENST00000621526 FBXO31Q5XUX0 539 aaPredicted RBP4.07□□□□□ -1.76
CPNE3-211ENST00000621526 TRIM52Q96A61 297 aa4.07□□□□□ -1.76
CPNE3-211ENST00000621526 SLAIN2Q9P270 581 aa4.07□□□□□ -1.76
CPNE3-211ENST00000621526 CFAP74Q9C0B2 1584 aa4.06□□□□□ -1.76
CPNE3-211ENST00000621526 LRRC7Q96NW7 1537 aa4.06□□□□□ -1.76
CPNE3-211ENST00000621526 NPHP4O75161 1426 aaPredicted RBP4.06□□□□□ -1.76
CPNE3-211ENST00000621526 JCADQ9P266 1359 aa4.06□□□□□ -1.76
CPNE3-211ENST00000621526 SPAG9O60271 1321 aaKnown RBP4.06□□□□□ -1.76
CPNE3-211ENST00000621526 KCNA6P17658 529 aa4.06□□□□□ -1.76
CPNE3-211ENST00000621526 RBM6P78332 1123 aaKnown RBP4.06□□□□□ -1.76
CPNE3-211ENST00000621526 CSRNP3Q8WYN3 585 aa4.06□□□□□ -1.76
CPNE3-211ENST00000621526 RBM33Q96EV2 1170 aaKnown RBP4.06□□□□□ -1.76
CPNE3-211ENST00000621526 SIGLEC1Q9BZZ2 1709 aa4.06□□□□□ -1.76
CPNE3-211ENST00000621526 ALKQ9UM73 1620 aa4.06□□□□□ -1.76
CPNE3-211ENST00000621526 CDK12Q9NYV4 1490 aaPredicted RBP4.05□□□□□ -1.76
CPNE3-211ENST00000621526 MIA2Q96PC5 1412 aa4.05□□□□□ -1.76
CPNE3-211ENST00000621526 NGLY1Q96IV0 654 aa4.05□□□□□ -1.76
CPNE3-211ENST00000621526 QTRT2Q9H974 415 aaKnown RBP4.05□□□□□ -1.76
CPNE3-211ENST00000621526 TNRQ92752 1358 aa4.04□□□□□ -1.76
CPNE3-211ENST00000621526 MEX3CQ5U5Q3 659 aaKnown RBP4.04□□□□□ -1.76
CPNE3-211ENST00000621526 TXNDC2Q86VQ3 553 aa4.04□□□□□ -1.76
CPNE3-211ENST00000621526 KDM5CP41229 1560 aa4.04□□□□□ -1.76
CPNE3-211ENST00000621526 C3P01024 1663 aa4.03□□□□□ -1.76
CPNE3-211ENST00000621526 WASHC2CQ9Y4E1 1318 aa4.03□□□□□ -1.76
CPNE3-211ENST00000621526 VWDEQ8N2E2 1590 aa4.03□□□□□ -1.76
CPNE3-211ENST00000621526 HNRNPMP52272 730 aaKnown RBP eCLIP4.03□□□□□ -1.76
CPNE3-211ENST00000621526 PROSER2Q86WR7 435 aaPredicted RBP4.03□□□□□ -1.76
CPNE3-211ENST00000621526 ATP1B4Q9UN42 357 aaPredicted RBP4.03□□□□□ -1.76
CPNE3-211ENST00000621526 EID1Q9Y6B2 187 aa4.03□□□□□ -1.76
CPNE3-211ENST00000621526 KDM5DQ9BY66 1539 aa4.03□□□□□ -1.76
CPNE3-211ENST00000621526 CEP170BQ9Y4F5 1589 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-211ENST00000621526 NUTM2BA6NNL0 878 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-211ENST00000621526 NUTM2EB1AL46 878 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-211ENST00000621526 LTKP29376 864 aa4.02□□□□□ -1.77
CPNE3-211ENST00000621526 RSPH4AQ5TD94 716 aa4.02□□□□□ -1.77
CPNE3-211ENST00000621526 NUTM2DQ5VT03 806 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-211ENST00000621526 NUTM2AQ8IVF1 878 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-211ENST00000621526 FGD6Q6ZV73 1430 aa4.02□□□□□ -1.77
CPNE3-211ENST00000621526 KIAA1107Q9UPP5 1409 aa4.02□□□□□ -1.77
CPNE3-211ENST00000621526 RAPGEF6Q8TEU7 1601 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms