RNA–Protein interactions for RNA: ENST00000620709.4

CD40-207, Transcript of CD40 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD40, Length 1,522 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-207ENST00000620709 ARHGAP5Q13017 1502 aa25.94■■□□□ 1.74
CD40-207ENST00000620709 ZFYVE16Q7Z3T8 1539 aa25.94■■□□□ 1.74
CD40-207ENST00000620709 YEATS2Q9ULM3 1422 aa25.93■■□□□ 1.74
CD40-207ENST00000620709 ZMYM4Q5VZL5 1548 aa25.93■■□□□ 1.74
CD40-207ENST00000620709 PTPRMP28827 1452 aa25.92■■□□□ 1.74
CD40-207ENST00000620709 CCDC18Q5T9S5 1454 aa25.92■■□□□ 1.74
CD40-207ENST00000620709 POGZQ7Z3K3 1410 aa25.91■■□□□ 1.74
CD40-207ENST00000620709 MADDQ8WXG6 1647 aa25.91■■□□□ 1.74
CD40-207ENST00000620709 PLPPR3Q6T4P5 718 aa25.89■■□□□ 1.74
CD40-207ENST00000620709 MYT1LQ9UL68 1186 aa25.89■■□□□ 1.74
CD40-207ENST00000620709 MLECQ14165 292 aa25.88■■□□□ 1.73
CD40-207ENST00000620709 MAGI2Q86UL8 1455 aa25.87■■□□□ 1.73
CD40-207ENST00000620709 FYCO1Q9BQS8 1478 aa25.87■■□□□ 1.73
CD40-207ENST00000620709 RIMS1Q86UR5 1692 aaKnown RBP25.84■■□□□ 1.73
CD40-207ENST00000620709 SIGLEC1Q9BZZ2 1709 aa25.82■■□□□ 1.72
CD40-207ENST00000620709 CDC42BPBQ9Y5S2 1711 aa25.82■■□□□ 1.72
CD40-207ENST00000620709 AFAP1Q8N556 730 aa25.82■■□□□ 1.72
CD40-207ENST00000620709 ZNF518AQ6AHZ1 1483 aa25.79■■□□□ 1.72
CD40-207ENST00000620709 PREX2Q70Z35 1606 aa25.79■■□□□ 1.72
CD40-207ENST00000620709 ATP10AO60312 1499 aa25.78■■□□□ 1.72
CD40-207ENST00000620709 ZNF777Q9ULD5 760 aaPredicted RBP25.76■■□□□ 1.71
CD40-207ENST00000620709 C9orf84Q5VXU9 1444 aa25.76■■□□□ 1.71
CD40-207ENST00000620709 CDC42BPAQ5VT25 1732 aa25.73■■□□□ 1.71
CD40-207ENST00000620709 FER1L4A9Z1Z3 1794 aa25.72■■□□□ 1.71
CD40-207ENST00000620709 KDM5CP41229 1560 aa25.71■■□□□ 1.71
CD40-207ENST00000620709 TRAPPC8Q9Y2L5 1435 aa25.7■■□□□ 1.7
CD40-207ENST00000620709 ABCC1P33527 1531 aa25.7■■□□□ 1.7
CD40-207ENST00000620709 ARHGEF12Q9NZN5 1544 aa25.69■■□□□ 1.7
CD40-207ENST00000620709 ITSN2Q9NZM3 1697 aa25.69■■□□□ 1.7
CD40-207ENST00000620709 CEP162Q5TB80 1403 aa25.68■■□□□ 1.7
CD40-207ENST00000620709 MTUS2Q5JR59 1369 aa25.68■■□□□ 1.7
CD40-207ENST00000620709 ILDR1Q86SU0 546 aaPredicted RBP25.68■■□□□ 1.7
CD40-207ENST00000620709 DIP2CQ9Y2E4 1556 aa25.65■■□□□ 1.7
CD40-207ENST00000620709 ABCA6Q8N139 1617 aa25.64■■□□□ 1.69
CD40-207ENST00000620709 LMTK3Q96Q04 1460 aa25.63■■□□□ 1.69
CD40-207ENST00000620709 GPATCH8Q9UKJ3 1502 aaKnown RBP25.63■■□□□ 1.69
CD40-207ENST00000620709 CCNB3Q8WWL7 1395 aa25.63■■□□□ 1.69
CD40-207ENST00000620709 MLH3Q9UHC1 1453 aa25.63■■□□□ 1.69
CD40-207ENST00000620709 HNRNPMP52272 730 aaKnown RBP eCLIP25.62■■□□□ 1.69
CD40-207ENST00000620709 CFDP1Q9UEE9 299 aaPredicted RBP25.62■■□□□ 1.69
CD40-207ENST00000620709 SAMD9LQ8IVG5 1584 aa25.61■■□□□ 1.69
CD40-207ENST00000620709 HSPA2P54652 639 aa25.61■■□□□ 1.69
CD40-207ENST00000620709 LOC105371045A0A1W2PR82 267 aa25.59■■□□□ 1.69
CD40-207ENST00000620709 CEBPAP49715 358 aaPredicted RBP25.59■■□□□ 1.69
CD40-207ENST00000620709 SYCP2Q9BX26 1530 aa25.59■■□□□ 1.69
CD40-207ENST00000620709 KIDINS220Q9ULH0 1771 aa25.56■■□□□ 1.68
CD40-207ENST00000620709 ESF1Q9H501 851 aaKnown RBP25.56■■□□□ 1.68
CD40-207ENST00000620709 SPAG9O60271 1321 aaKnown RBP25.55■■□□□ 1.68
CD40-207ENST00000620709 REREQ9P2R6 1566 aa25.54■■□□□ 1.68
CD40-207ENST00000620709 EHBP1L1Q8N3D4 1523 aa25.53■■□□□ 1.68
CD40-207ENST00000620709 PLEKHH2Q8IVE3 1493 aa25.5■■□□□ 1.67
CD40-207ENST00000620709 TIAM1Q13009 1591 aa25.49■■□□□ 1.67
CD40-207ENST00000620709 ZNF644Q9H582 1327 aaPredicted RBP25.48■■□□□ 1.67
CD40-207ENST00000620709 KIAA1107Q9UPP5 1409 aa25.48■■□□□ 1.67
CD40-207ENST00000620709 AGLP35573 1532 aa25.48■■□□□ 1.67
CD40-207ENST00000620709 ATP7AQ04656 1500 aa25.45■■□□□ 1.66
CD40-207ENST00000620709 PREX1Q8TCU6 1659 aa25.45■■□□□ 1.66
CD40-207ENST00000620709 SUPT6HQ7KZ85 1726 aaKnown RBP25.45■■□□□ 1.66
CD40-207ENST00000620709 C3P01024 1663 aa25.41■■□□□ 1.66
CD40-207ENST00000620709 INO80Q9ULG1 1556 aaPredicted RBP25.4■■□□□ 1.66
CD40-207ENST00000620709 NCOA2Q15596 1464 aa25.4■■□□□ 1.66
CD40-207ENST00000620709 UHRF1BP1Q6BDS2 1440 aa25.39■■□□□ 1.65
CD40-207ENST00000620709 VPS8Q8N3P4 1428 aa25.38■■□□□ 1.65
CD40-207ENST00000620709 A2MP01023 1474 aa25.37■■□□□ 1.65
CD40-207ENST00000620709 CNTLNQ9NXG0 1405 aa25.36■■□□□ 1.65
CD40-207ENST00000620709 SETD1BQ9UPS6 1966 aaKnown RBP25.35■■□□□ 1.65
CD40-207ENST00000620709 GGT6Q6P531 493 aa25.35■■□□□ 1.65
CD40-207ENST00000620709 FBXO41Q8TF61 875 aa25.33■■□□□ 1.65
CD40-207ENST00000620709 MBD5Q9P267 1494 aa25.33■■□□□ 1.65
CD40-207ENST00000620709 ADGBQ8N7X0 1667 aa25.31■■□□□ 1.64
CD40-207ENST00000620709 CAMSAP2Q08AD1 1489 aa25.31■■□□□ 1.64
CD40-207ENST00000620709 PLXNC1O60486 1568 aa25.31■■□□□ 1.64
CD40-207ENST00000620709 LRRC9Q6ZRR7 1453 aa25.29■■□□□ 1.64
CD40-207ENST00000620709 CLTCQ00610 1675 aaKnown RBP25.29■■□□□ 1.64
CD40-207ENST00000620709 ZMYM3Q14202 1370 aa25.28■■□□□ 1.64
CD40-207ENST00000620709 CCDC141Q6ZP82 1450 aa25.27■■□□□ 1.64
CD40-207ENST00000620709 MROH2AA6NES4 1674 aa25.27■■□□□ 1.64
CD40-207ENST00000620709 KANK4Q5T7N3 995 aaPredicted RBP25.26■■□□□ 1.63
CD40-207ENST00000620709 RTEL1-TNFRSF6BF6WH68 1400 aa25.25■■□□□ 1.63
CD40-207ENST00000620709 DMRT2Q9Y5R5 561 aa25.23■■□□□ 1.63
CD40-207ENST00000620709 STRCQ7RTU9 1775 aa25.23■■□□□ 1.63
CD40-207ENST00000620709 RSPH4AQ5TD94 716 aa25.22■■□□□ 1.63
CD40-207ENST00000620709 TSPY4P0CV99 314 aa25.22■■□□□ 1.63
CD40-207ENST00000620709 TSPY10P0CW01 314 aa25.22■■□□□ 1.63
CD40-207ENST00000620709 DHX29Q7Z478 1369 aaKnown RBP25.21■■□□□ 1.63
CD40-207ENST00000620709 KIF3BO15066 747 aa25.2■■□□□ 1.62
CD40-207ENST00000620709 APLP2Q06481 763 aa25.2■■□□□ 1.62
CD40-207ENST00000620709 CERKQ8TCT0 537 aa25.2■■□□□ 1.62
CD40-207ENST00000620709 NPATQ14207 1427 aa25.19■■□□□ 1.62
CD40-207ENST00000620709 PPP6R1Q9UPN7 881 aa25.17■■□□□ 1.62
CD40-207ENST00000620709 MAP3K1Q13233 1512 aa25.16■■□□□ 1.62
CD40-207ENST00000620709 ARHGEF5Q12774 1597 aa25.16■■□□□ 1.62
CD40-207ENST00000620709 PTPRKQ15262 1439 aa25.13■■□□□ 1.61
CD40-207ENST00000620709 MYOM3Q5VTT5 1437 aa25.11■■□□□ 1.61
CD40-207ENST00000620709 CAMSAP1Q5T5Y3 1602 aa25.11■■□□□ 1.61
CD40-207ENST00000620709 MYO3AQ8NEV4 1616 aa25.1■■□□□ 1.61
CD40-207ENST00000620709 NCOA1Q15788 1441 aa25.1■■□□□ 1.61
CD40-207ENST00000620709 WASHC2CQ9Y4E1 1318 aa25.09■■□□□ 1.61
CD40-207ENST00000620709 PTPRTO14522 1441 aa25.08■■□□□ 1.61
CD40-207ENST00000620709 NCKAP5LQ9HCH0 1330 aa25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms