RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 ZCCHC11Q5TAX3 1644 aaKnown RBP12.26□□□□□ -0.45
CPNE3-209ENST00000620393 CCNB3Q8WWL7 1395 aa12.26□□□□□ -0.45
CPNE3-209ENST00000620393 WDR7Q9Y4E6 1490 aa12.26□□□□□ -0.45
CPNE3-209ENST00000620393 CFDP1Q9UEE9 299 aaPredicted RBP12.24□□□□□ -0.45
CPNE3-209ENST00000620393 ABCC10Q5T3U5 1492 aa12.23□□□□□ -0.45
CPNE3-209ENST00000620393 MAPKBP1O60336 1514 aa12.21□□□□□ -0.45
CPNE3-209ENST00000620393 GPATCH8Q9UKJ3 1502 aaKnown RBP12.21□□□□□ -0.45
CPNE3-209ENST00000620393 MYOM3Q5VTT5 1437 aa12.21□□□□□ -0.45
CPNE3-209ENST00000620393 RRBP1Q9P2E9 1410 aaKnown RBP12.21□□□□□ -0.45
CPNE3-209ENST00000620393 MIA2Q96PC5 1412 aa12.2□□□□□ -0.46
CPNE3-209ENST00000620393 SUPT6HQ7KZ85 1726 aaKnown RBP12.2□□□□□ -0.46
CPNE3-209ENST00000620393 FAM69CQ0P6D2 419 aa12.2□□□□□ -0.46
CPNE3-209ENST00000620393 FAM50AQ14320 339 aaKnown RBP12.2□□□□□ -0.46
CPNE3-209ENST00000620393 EFCAB2Q5VUJ9 269 aa12.2□□□□□ -0.46
CPNE3-209ENST00000620393 PCGF6Q9BYE7 350 aa12.2□□□□□ -0.46
CPNE3-209ENST00000620393 FGD6Q6ZV73 1430 aa12.2□□□□□ -0.46
CPNE3-209ENST00000620393 PLCH2O75038 1416 aa12.19□□□□□ -0.46
CPNE3-209ENST00000620393 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.18□□□□□ -0.46
CPNE3-209ENST00000620393 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.18□□□□□ -0.46
CPNE3-209ENST00000620393 ZNF777Q9ULD5 760 aaPredicted RBP12.18□□□□□ -0.46
CPNE3-209ENST00000620393 U3KPZ7 1027 aaPredicted RBP12.18□□□□□ -0.46
CPNE3-209ENST00000620393 KIF14Q15058 1648 aa12.18□□□□□ -0.46
CPNE3-209ENST00000620393 ZNF644Q9H582 1327 aaPredicted RBP12.17□□□□□ -0.46
CPNE3-209ENST00000620393 SLC4A2P04920 1241 aa12.16□□□□□ -0.46
CPNE3-209ENST00000620393 CD109Q6YHK3 1445 aa12.16□□□□□ -0.46
CPNE3-209ENST00000620393 RSPH4AQ5TD94 716 aa12.14□□□□□ -0.47
CPNE3-209ENST00000620393 ITGAEP38570 1179 aa12.13□□□□□ -0.47
CPNE3-209ENST00000620393 HNRNPMP52272 730 aaKnown RBP eCLIP12.13□□□□□ -0.47
CPNE3-209ENST00000620393 TCOF1Q13428 1488 aaKnown RBP12.13□□□□□ -0.47
CPNE3-209ENST00000620393 GLI2P10070 1586 aa12.12□□□□□ -0.47
CPNE3-209ENST00000620393 ABCA9Q8IUA7 1624 aa12.11□□□□□ -0.47
CPNE3-209ENST00000620393 TTC37Q6PGP7 1564 aa12.1□□□□□ -0.47
CPNE3-209ENST00000620393 ARAP3Q8WWN8 1544 aa12.1□□□□□ -0.47
CPNE3-209ENST00000620393 KIAA1107Q9UPP5 1409 aa12.1□□□□□ -0.47
CPNE3-209ENST00000620393 TSPY4P0CV99 314 aa12.09□□□□□ -0.47
CPNE3-209ENST00000620393 TSPY10P0CW01 314 aa12.09□□□□□ -0.47
CPNE3-209ENST00000620393 TRHP20396 242 aaPredicted RBP12.09□□□□□ -0.47
CPNE3-209ENST00000620393 ARHGAP5Q13017 1502 aa12.09□□□□□ -0.47
CPNE3-209ENST00000620393 PTPN23Q9H3S7 1636 aa12.08□□□□□ -0.48
CPNE3-209ENST00000620393 FANCAO15360 1455 aa12.08□□□□□ -0.48
CPNE3-209ENST00000620393 PLEKHH2Q8IVE3 1493 aa12.08□□□□□ -0.48
CPNE3-209ENST00000620393 ABCC5O15440 1437 aa12.07□□□□□ -0.48
CPNE3-209ENST00000620393 AKNAQ7Z591 1439 aa12.07□□□□□ -0.48
CPNE3-209ENST00000620393 CAMSAP2Q08AD1 1489 aa12.07□□□□□ -0.48
CPNE3-209ENST00000620393 MBD5Q9P267 1494 aa12.07□□□□□ -0.48
CPNE3-209ENST00000620393 DIP2BQ9P265 1576 aa12.06□□□□□ -0.48
CPNE3-209ENST00000620393 PTPRKQ15262 1439 aa12.06□□□□□ -0.48
CPNE3-209ENST00000620393 CHIC2Q9UKJ5 165 aa12.06□□□□□ -0.48
CPNE3-209ENST00000620393 CDC42BPAQ5VT25 1732 aa12.06□□□□□ -0.48
CPNE3-209ENST00000620393 SCAPERQ9BY12 1400 aa12.05□□□□□ -0.48
CPNE3-209ENST00000620393 AFAP1Q8N556 730 aa12.05□□□□□ -0.48
CPNE3-209ENST00000620393 SLC4A1APQ9BWU0 796 aaKnown RBP12.05□□□□□ -0.48
CPNE3-209ENST00000620393 ITSN2Q9NZM3 1697 aa12.05□□□□□ -0.48
CPNE3-209ENST00000620393 PREX2Q70Z35 1606 aa12.04□□□□□ -0.48
CPNE3-209ENST00000620393 DAPK1P53355 1430 aa12.04□□□□□ -0.48
CPNE3-209ENST00000620393 NEO1Q92859 1461 aa12.04□□□□□ -0.48
CPNE3-209ENST00000620393 CDC42BPBQ9Y5S2 1711 aa12.03□□□□□ -0.48
CPNE3-209ENST00000620393 ARHGEF12Q9NZN5 1544 aa12.03□□□□□ -0.48
CPNE3-209ENST00000620393 MYO5CQ9NQX4 1742 aa12.03□□□□□ -0.48
CPNE3-209ENST00000620393 SAMD9LQ8IVG5 1584 aa12.02□□□□□ -0.49
CPNE3-209ENST00000620393 TRAPPC8Q9Y2L5 1435 aa12.02□□□□□ -0.49
CPNE3-209ENST00000620393 ADGRL1O94910 1474 aa12.02□□□□□ -0.49
CPNE3-209ENST00000620393 TEX14Q8IWB6 1497 aa12.02□□□□□ -0.49
CPNE3-209ENST00000620393 MAP3K4Q9Y6R4 1608 aa12.01□□□□□ -0.49
CPNE3-209ENST00000620393 RAPGEF3O95398 923 aa12.01□□□□□ -0.49
CPNE3-209ENST00000620393 RRP7BPQ9NSQ0 103 aa12.01□□□□□ -0.49
CPNE3-209ENST00000620393 SPAG9O60271 1321 aaKnown RBP12.01□□□□□ -0.49
CPNE3-209ENST00000620393 ROCK1Q13464 1354 aa12.01□□□□□ -0.49
CPNE3-209ENST00000620393 CAPN15O75808 1086 aa12□□□□□ -0.49
CPNE3-209ENST00000620393 HRCP23327 699 aa12□□□□□ -0.49
CPNE3-209ENST00000620393 CCDC141Q6ZP82 1450 aa12□□□□□ -0.49
CPNE3-209ENST00000620393 ANKRD30AQ9BXX3 1397 aa11.99□□□□□ -0.49
CPNE3-209ENST00000620393 NCOA1Q15788 1441 aa11.99□□□□□ -0.49
CPNE3-209ENST00000620393 ARHGEF5Q12774 1597 aa11.99□□□□□ -0.49
CPNE3-209ENST00000620393 ABCC1P33527 1531 aa11.98□□□□□ -0.49
CPNE3-209ENST00000620393 SYCP2Q9BX26 1530 aa11.98□□□□□ -0.49
CPNE3-209ENST00000620393 DENND4BO75064 1496 aaPredicted RBP11.98□□□□□ -0.49
CPNE3-209ENST00000620393 C9orf84Q5VXU9 1444 aa11.98□□□□□ -0.49
CPNE3-209ENST00000620393 SETD5Q9C0A6 1442 aa11.98□□□□□ -0.49
CPNE3-209ENST00000620393 SPINK5Q9NQ38 1064 aaPredicted RBP11.97□□□□□ -0.49
CPNE3-209ENST00000620393 MYT1LQ9UL68 1186 aa11.97□□□□□ -0.49
CPNE3-209ENST00000620393 DNMT1P26358 1616 aaKnown RBP11.97□□□□□ -0.49
CPNE3-209ENST00000620393 RTEL1-TNFRSF6BF6WH68 1400 aa11.96□□□□□ -0.49
CPNE3-209ENST00000620393 SHANK2Q9UPX8 1470 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 HFM1A2PYH4 1435 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 NAIPQ13075 1403 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 POGZQ7Z3K3 1410 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 CFAP74Q9C0B2 1584 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 KIF13AQ9H1H9 1805 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 ADGRL2O95490 1459 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 ZNF518AQ6AHZ1 1483 aa11.95□□□□□ -0.5
CPNE3-209ENST00000620393 ACIN1Q9UKV3 1341 aaKnown RBP11.93□□□□□ -0.5
CPNE3-209ENST00000620393 COL17A1Q9UMD9 1497 aaPredicted RBP11.93□□□□□ -0.5
CPNE3-209ENST00000620393 RAB3GAP2Q9H2M9 1393 aa11.92□□□□□ -0.5
CPNE3-209ENST00000620393 KIF15Q9NS87 1388 aa11.92□□□□□ -0.5
CPNE3-209ENST00000620393 PPRC1Q5VV67 1664 aaKnown RBP11.92□□□□□ -0.5
CPNE3-209ENST00000620393 MLH3Q9UHC1 1453 aa11.92□□□□□ -0.5
CPNE3-209ENST00000620393 SAMD1Q6SPF0 538 aaPredicted RBP11.91□□□□□ -0.5
CPNE3-209ENST00000620393 ANKRD50Q9ULJ7 1429 aa11.9□□□□□ -0.5
CPNE3-209ENST00000620393 MAST1Q9Y2H9 1570 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms