RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ARID4BQ4LE39 1312 aaPredicted RBP30.8■■■□□ 2.52
CCDC28A-203ENST00000617445 POGZQ7Z3K3 1410 aa30.79■■■□□ 2.52
CCDC28A-203ENST00000617445 ADAMTSL3P82987 1691 aa30.78■■■□□ 2.52
CCDC28A-203ENST00000617445 ARHGAP5Q13017 1502 aa30.76■■■□□ 2.51
CCDC28A-203ENST00000617445 ZFYVE16Q7Z3T8 1539 aa30.76■■■□□ 2.51
CCDC28A-203ENST00000617445 BCORL1Q5H9F3 1711 aa30.75■■■□□ 2.51
CCDC28A-203ENST00000617445 ZNF518AQ6AHZ1 1483 aa30.7■■■□□ 2.5
CCDC28A-203ENST00000617445 YEATS2Q9ULM3 1422 aa30.69■■■□□ 2.5
CCDC28A-203ENST00000617445 CDC42BPBQ9Y5S2 1711 aa30.69■■■□□ 2.5
CCDC28A-203ENST00000617445 PTPRMP28827 1452 aa30.69■■■□□ 2.5
CCDC28A-203ENST00000617445 PREX2Q70Z35 1606 aa30.66■■■□□ 2.5
CCDC28A-203ENST00000617445 HECW2Q9P2P5 1572 aa30.66■■■□□ 2.5
CCDC28A-203ENST00000617445 ATP10AO60312 1499 aa30.63■■■□□ 2.49
CCDC28A-203ENST00000617445 CEP162Q5TB80 1403 aa30.63■■■□□ 2.49
CCDC28A-203ENST00000617445 MADDQ8WXG6 1647 aa30.62■■■□□ 2.49
CCDC28A-203ENST00000617445 KDM5CP41229 1560 aa30.61■■■□□ 2.49
CCDC28A-203ENST00000617445 AFAP1Q8N556 730 aa30.6■■■□□ 2.49
CCDC28A-203ENST00000617445 CDC42BPAQ5VT25 1732 aa30.59■■■□□ 2.49
CCDC28A-203ENST00000617445 C9orf84Q5VXU9 1444 aa30.58■■■□□ 2.49
CCDC28A-203ENST00000617445 ABCC1P33527 1531 aa30.55■■■□□ 2.48
CCDC28A-203ENST00000617445 MTUS2Q5JR59 1369 aa30.54■■■□□ 2.48
CCDC28A-203ENST00000617445 SIGLEC1Q9BZZ2 1709 aa30.53■■■□□ 2.48
CCDC28A-203ENST00000617445 MLH3Q9UHC1 1453 aa30.53■■■□□ 2.48
CCDC28A-203ENST00000617445 MYT1LQ9UL68 1186 aa30.53■■■□□ 2.48
CCDC28A-203ENST00000617445 GPATCH8Q9UKJ3 1502 aaKnown RBP30.52■■■□□ 2.48
CCDC28A-203ENST00000617445 RIMS1Q86UR5 1692 aaKnown RBP30.52■■■□□ 2.48
CCDC28A-203ENST00000617445 ITSN2Q9NZM3 1697 aa30.5■■■□□ 2.47
CCDC28A-203ENST00000617445 ARHGEF12Q9NZN5 1544 aa30.5■■■□□ 2.47
CCDC28A-203ENST00000617445 TRAPPC8Q9Y2L5 1435 aa30.49■■■□□ 2.47
CCDC28A-203ENST00000617445 CCNB3Q8WWL7 1395 aa30.47■■■□□ 2.47
CCDC28A-203ENST00000617445 MLECQ14165 292 aa30.47■■■□□ 2.47
CCDC28A-203ENST00000617445 REREQ9P2R6 1566 aa30.46■■■□□ 2.47
CCDC28A-203ENST00000617445 ZNF777Q9ULD5 760 aaPredicted RBP30.46■■■□□ 2.47
CCDC28A-203ENST00000617445 CFDP1Q9UEE9 299 aaPredicted RBP30.45■■■□□ 2.47
CCDC28A-203ENST00000617445 DIP2CQ9Y2E4 1556 aa30.44■■■□□ 2.46
CCDC28A-203ENST00000617445 PLEKHH2Q8IVE3 1493 aa30.44■■■□□ 2.46
CCDC28A-203ENST00000617445 FER1L4A9Z1Z3 1794 aa30.43■■■□□ 2.46
CCDC28A-203ENST00000617445 EHBP1L1Q8N3D4 1523 aa30.43■■■□□ 2.46
CCDC28A-203ENST00000617445 KIAA1107Q9UPP5 1409 aa30.43■■■□□ 2.46
CCDC28A-203ENST00000617445 SAMD9LQ8IVG5 1584 aa30.42■■■□□ 2.46
CCDC28A-203ENST00000617445 LOC105371045A0A1W2PR82 267 aa30.42■■■□□ 2.46
CCDC28A-203ENST00000617445 ABCA6Q8N139 1617 aa30.39■■■□□ 2.46
CCDC28A-203ENST00000617445 KIDINS220Q9ULH0 1771 aa30.37■■■□□ 2.45
CCDC28A-203ENST00000617445 AGLP35573 1532 aa30.37■■■□□ 2.45
CCDC28A-203ENST00000617445 SYCP2Q9BX26 1530 aa30.37■■■□□ 2.45
CCDC28A-203ENST00000617445 HNRNPMP52272 730 aaKnown RBP eCLIP30.35■■■□□ 2.45
CCDC28A-203ENST00000617445 SPAG9O60271 1321 aaKnown RBP30.34■■■□□ 2.45
CCDC28A-203ENST00000617445 LMTK3Q96Q04 1460 aa30.33■■■□□ 2.45
CCDC28A-203ENST00000617445 TIAM1Q13009 1591 aa30.32■■■□□ 2.44
CCDC28A-203ENST00000617445 VPS8Q8N3P4 1428 aa30.31■■■□□ 2.44
CCDC28A-203ENST00000617445 PLPPR3Q6T4P5 718 aa30.3■■■□□ 2.44
CCDC28A-203ENST00000617445 SUPT6HQ7KZ85 1726 aaKnown RBP30.27■■■□□ 2.44
CCDC28A-203ENST00000617445 ESF1Q9H501 851 aaKnown RBP30.25■■■□□ 2.43
CCDC28A-203ENST00000617445 SETD1BQ9UPS6 1966 aaKnown RBP30.24■■■□□ 2.43
CCDC28A-203ENST00000617445 ATP7AQ04656 1500 aa30.24■■■□□ 2.43
CCDC28A-203ENST00000617445 NCOA2Q15596 1464 aa30.23■■■□□ 2.43
CCDC28A-203ENST00000617445 ZNF644Q9H582 1327 aaPredicted RBP30.21■■■□□ 2.43
CCDC28A-203ENST00000617445 INO80Q9ULG1 1556 aaPredicted RBP30.2■■■□□ 2.43
CCDC28A-203ENST00000617445 MBD5Q9P267 1494 aa30.19■■■□□ 2.42
CCDC28A-203ENST00000617445 MAP3K1Q13233 1512 aa30.19■■■□□ 2.42
CCDC28A-203ENST00000617445 CEBPAP49715 358 aaPredicted RBP30.19■■■□□ 2.42
CCDC28A-203ENST00000617445 RSPH4AQ5TD94 716 aa30.19■■■□□ 2.42
CCDC28A-203ENST00000617445 CNTLNQ9NXG0 1405 aa30.19■■■□□ 2.42
CCDC28A-203ENST00000617445 LRRC9Q6ZRR7 1453 aa30.17■■■□□ 2.42
CCDC28A-203ENST00000617445 RTEL1-TNFRSF6BF6WH68 1400 aa30.15■■■□□ 2.42
CCDC28A-203ENST00000617445 PREX1Q8TCU6 1659 aa30.15■■■□□ 2.42
CCDC28A-203ENST00000617445 A2MP01023 1474 aa30.15■■■□□ 2.42
CCDC28A-203ENST00000617445 HSPA2P54652 639 aa30.14■■■□□ 2.42
CCDC28A-203ENST00000617445 PLXNC1O60486 1568 aa30.12■■■□□ 2.41
CCDC28A-203ENST00000617445 ADGBQ8N7X0 1667 aa30.12■■■□□ 2.41
CCDC28A-203ENST00000617445 C3P01024 1663 aa30.11■■■□□ 2.41
CCDC28A-203ENST00000617445 ILDR1Q86SU0 546 aaPredicted RBP30.1■■■□□ 2.41
CCDC28A-203ENST00000617445 CAMSAP2Q08AD1 1489 aa30.09■■■□□ 2.41
CCDC28A-203ENST00000617445 CCDC141Q6ZP82 1450 aa30.08■■■□□ 2.41
CCDC28A-203ENST00000617445 PPP6R1Q9UPN7 881 aa30.08■■■□□ 2.41
CCDC28A-203ENST00000617445 UHRF1BP1Q6BDS2 1440 aa30.07■■■□□ 2.4
CCDC28A-203ENST00000617445 MROH2AA6NES4 1674 aa30.06■■■□□ 2.4
CCDC28A-203ENST00000617445 KANK4Q5T7N3 995 aaPredicted RBP30.03■■■□□ 2.4
CCDC28A-203ENST00000617445 DHX29Q7Z478 1369 aaKnown RBP30.03■■■□□ 2.4
CCDC28A-203ENST00000617445 APLP2Q06481 763 aa30.02■■■□□ 2.4
CCDC28A-203ENST00000617445 ARHGEF5Q12774 1597 aa30.02■■■□□ 2.4
CCDC28A-203ENST00000617445 TSPY4P0CV99 314 aa30.01■■■□□ 2.39
CCDC28A-203ENST00000617445 TSPY10P0CW01 314 aa30.01■■■□□ 2.39
CCDC28A-203ENST00000617445 ZMYM3Q14202 1370 aa30.01■■■□□ 2.39
CCDC28A-203ENST00000617445 GGT6Q6P531 493 aa30■■■□□ 2.39
CCDC28A-203ENST00000617445 NPATQ14207 1427 aa29.99■■■□□ 2.39
CCDC28A-203ENST00000617445 MIA2Q96PC5 1412 aa29.98■■■□□ 2.39
CCDC28A-203ENST00000617445 DMRT2Q9Y5R5 561 aa29.96■■■□□ 2.39
CCDC28A-203ENST00000617445 MYOM3Q5VTT5 1437 aa29.95■■■□□ 2.38
CCDC28A-203ENST00000617445 CLTCQ00610 1675 aaKnown RBP29.94■■■□□ 2.38
CCDC28A-203ENST00000617445 KIF3BO15066 747 aa29.89■■■□□ 2.38
CCDC28A-203ENST00000617445 FBXO41Q8TF61 875 aa29.89■■■□□ 2.38
CCDC28A-203ENST00000617445 STRCQ7RTU9 1775 aa29.87■■■□□ 2.37
CCDC28A-203ENST00000617445 FAM135AQ9P2D6 1515 aa29.86■■■□□ 2.37
CCDC28A-203ENST00000617445 MAST1Q9Y2H9 1570 aa29.86■■■□□ 2.37
CCDC28A-203ENST00000617445 PTPRKQ15262 1439 aa29.84■■■□□ 2.37
CCDC28A-203ENST00000617445 PTPRTO14522 1441 aa29.79■■■□□ 2.36
CCDC28A-203ENST00000617445 WASHC2CQ9Y4E1 1318 aa29.77■■■□□ 2.36
CCDC28A-203ENST00000617445 KDM5DQ9BY66 1539 aa29.77■■■□□ 2.36
CCDC28A-203ENST00000617445 NCOA1Q15788 1441 aa29.76■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms