RNA–Protein interactions for RNA: ENST00000617103.4

CLTCL1-209, Transcript of clathrin heavy chain like 1, humanhuman

TSL 1 (best)

Gene CLTCL1, Length 4,859 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-209ENST00000617103 SOGA1O94964 1423 aa13.51□□□□□ -0.25
CLTCL1-209ENST00000617103 RAB3GAP2Q9H2M9 1393 aa13.51□□□□□ -0.25
CLTCL1-209ENST00000617103 PLPPR3Q6T4P5 718 aa13.51□□□□□ -0.25
CLTCL1-209ENST00000617103 SENP3Q9H4L4 574 aaPredicted RBP13.51□□□□□ -0.25
CLTCL1-209ENST00000617103 HSP90AA2PQ14568 343 aaPredicted RBP13.5□□□□□ -0.25
CLTCL1-209ENST00000617103 C14orf37Q86TY3 774 aa13.49□□□□□ -0.25
CLTCL1-209ENST00000617103 IPO8O15397 1037 aaKnown RBP13.48□□□□□ -0.25
CLTCL1-209ENST00000617103 PDE3BQ13370 1112 aa13.48□□□□□ -0.25
CLTCL1-209ENST00000617103 OS9Q13438 667 aaPredicted RBP13.48□□□□□ -0.25
CLTCL1-209ENST00000617103 KANK4Q5T7N3 995 aaPredicted RBP13.48□□□□□ -0.25
CLTCL1-209ENST00000617103 ZBTB7CA1YPR0 619 aa13.48□□□□□ -0.25
CLTCL1-209ENST00000617103 GSE1Q14687 1217 aa13.48□□□□□ -0.25
CLTCL1-209ENST00000617103 SYAP1Q96A49 352 aaPredicted RBP13.47□□□□□ -0.25
CLTCL1-209ENST00000617103 PMFBP1Q8TBY8 1022 aa13.47□□□□□ -0.25
CLTCL1-209ENST00000617103 ARID3AQ99856 593 aa13.47□□□□□ -0.25
CLTCL1-209ENST00000617103 AMER1Q5JTC6 1135 aaPredicted RBP13.47□□□□□ -0.25
CLTCL1-209ENST00000617103 HAP1P54257 671 aaPredicted RBP13.46□□□□□ -0.25
CLTCL1-209ENST00000617103 MORC1Q86VD1 984 aa13.46□□□□□ -0.25
CLTCL1-209ENST00000617103 POGKQ9P215 609 aa13.45□□□□□ -0.26
CLTCL1-209ENST00000617103 CALD1Q05682 793 aaKnown RBP13.44□□□□□ -0.26
CLTCL1-209ENST00000617103 PDE4AP27815 886 aa13.44□□□□□ -0.26
CLTCL1-209ENST00000617103 ARHGAP35Q9NRY4 1499 aa13.44□□□□□ -0.26
CLTCL1-209ENST00000617103 MFAP1P55081 439 aaKnown RBP13.43□□□□□ -0.26
CLTCL1-209ENST00000617103 NAP1L2Q9ULW6 460 aaPredicted RBP13.43□□□□□ -0.26
CLTCL1-209ENST00000617103 GOLGA2Q08379 1002 aa13.42□□□□□ -0.26
CLTCL1-209ENST00000617103 NLRP13Q86W25 1043 aa13.41□□□□□ -0.26
CLTCL1-209ENST00000617103 PKD2Q13563 968 aa13.41□□□□□ -0.26
CLTCL1-209ENST00000617103 VSIG10Q8N0Z9 540 aa13.41□□□□□ -0.26
CLTCL1-209ENST00000617103 BAZ1BQ9UIG0 1483 aaKnown RBP13.41□□□□□ -0.26
CLTCL1-209ENST00000617103 ITPRIPQ8IWB1 547 aa13.4□□□□□ -0.26
CLTCL1-209ENST00000617103 MPHOSPH9Q99550 1183 aa13.4□□□□□ -0.26
CLTCL1-209ENST00000617103 TAOK2Q9UL54 1235 aa13.4□□□□□ -0.26
CLTCL1-209ENST00000617103 DDX11L8A8MPP1 907 aa13.4□□□□□ -0.26
CLTCL1-209ENST00000617103 CARMIL1Q5VZK9 1371 aa13.39□□□□□ -0.27
CLTCL1-209ENST00000617103 PLEKHG5O94827 1062 aa13.39□□□□□ -0.27
CLTCL1-209ENST00000617103 TNNT3P45378 269 aaPredicted RBP13.39□□□□□ -0.27
CLTCL1-209ENST00000617103 FOXD1Q16676 465 aa13.39□□□□□ -0.27
CLTCL1-209ENST00000617103 KIAA1211Q6ZU35 1233 aa13.39□□□□□ -0.27
CLTCL1-209ENST00000617103 FAM161AQ3B820 660 aa13.39□□□□□ -0.27
CLTCL1-209ENST00000617103 A0A0G2JS52 829 aa13.38□□□□□ -0.27
CLTCL1-209ENST00000617103 CENPQQ7L2Z9 268 aaPredicted RBP13.38□□□□□ -0.27
CLTCL1-209ENST00000617103 APBB1O00213 710 aa13.37□□□□□ -0.27
CLTCL1-209ENST00000617103 HTATSF1O43719 755 aaKnown RBP13.37□□□□□ -0.27
CLTCL1-209ENST00000617103 ZBED9Q6R2W3 1325 aa13.37□□□□□ -0.27
CLTCL1-209ENST00000617103 L3MBTL2Q969R5 705 aa13.36□□□□□ -0.27
CLTCL1-209ENST00000617103 ROCK2O75116 1388 aaKnown RBP13.36□□□□□ -0.27
CLTCL1-209ENST00000617103 U2AF1L5P0DN76 240 aaPredicted RBP13.36□□□□□ -0.27
CLTCL1-209ENST00000617103 U2AF1Q01081 240 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLTCL1-209ENST00000617103 DHX57Q6P158 1386 aaKnown RBP13.36□□□□□ -0.27
CLTCL1-209ENST00000617103 SLC4A3P48751 1232 aa13.35□□□□□ -0.27
CLTCL1-209ENST00000617103 FMN1Q68DA7 1419 aa13.35□□□□□ -0.27
CLTCL1-209ENST00000617103 BAZ1AQ9NRL2 1556 aaPredicted RBP13.35□□□□□ -0.27
CLTCL1-209ENST00000617103 PHLDB1Q86UU1 1377 aa13.35□□□□□ -0.27
CLTCL1-209ENST00000617103 CENPJQ9HC77 1338 aaPredicted RBP13.34□□□□□ -0.27
CLTCL1-209ENST00000617103 SRPK2P78362 688 aaKnown RBP13.33□□□□□ -0.28
CLTCL1-209ENST00000617103 SKOR2Q2VWA4 1001 aaPredicted RBP13.33□□□□□ -0.28
CLTCL1-209ENST00000617103 PRKRIP1Q9H875 184 aaPredicted RBP13.33□□□□□ -0.28
CLTCL1-209ENST00000617103 SMC4Q9NTJ3 1288 aa13.33□□□□□ -0.28
CLTCL1-209ENST00000617103 PHF14O94880 888 aa13.33□□□□□ -0.28
CLTCL1-209ENST00000617103 RRP1P56182 461 aaKnown RBP13.33□□□□□ -0.28
CLTCL1-209ENST00000617103 EXOC6Q8TAG9 804 aa13.32□□□□□ -0.28
CLTCL1-209ENST00000617103 CLUAP1Q96AJ1 413 aa13.32□□□□□ -0.28
CLTCL1-209ENST00000617103 CSPP1Q1MSJ5 1256 aa13.32□□□□□ -0.28
CLTCL1-209ENST00000617103 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
CLTCL1-209ENST00000617103 CUX2O14529 1486 aa13.3□□□□□ -0.28
CLTCL1-209ENST00000617103 DDX49Q9Y6V7 483 aaKnown RBP13.3□□□□□ -0.28
CLTCL1-209ENST00000617103 CECR2Q9BXF3 1484 aa13.3□□□□□ -0.28
CLTCL1-209ENST00000617103 MYBBP1AQ9BQG0 1328 aaKnown RBP13.3□□□□□ -0.28
CLTCL1-209ENST00000617103 KANK1Q14678 1352 aa13.3□□□□□ -0.28
CLTCL1-209ENST00000617103 ST18O60284 1047 aa13.3□□□□□ -0.28
CLTCL1-209ENST00000617103 CCDC88BA6NC98 1476 aa13.3□□□□□ -0.28
CLTCL1-209ENST00000617103 KIF15Q9NS87 1388 aa13.29□□□□□ -0.28
CLTCL1-209ENST00000617103 RTF1Q92541 710 aaKnown RBP13.29□□□□□ -0.28
CLTCL1-209ENST00000617103 TPM4P67936 248 aa13.29□□□□□ -0.28
CLTCL1-209ENST00000617103 GNL2Q13823 731 aaKnown RBP13.29□□□□□ -0.28
CLTCL1-209ENST00000617103 TULP1O00294 542 aaPredicted RBP13.28□□□□□ -0.28
CLTCL1-209ENST00000617103 HMMRO75330 724 aa13.27□□□□□ -0.28
CLTCL1-209ENST00000617103 NUP155O75694 1391 aa13.27□□□□□ -0.28
CLTCL1-209ENST00000617103 CCDC146Q8IYE0 955 aa13.26□□□□□ -0.29
CLTCL1-209ENST00000617103 PLIN1O60240 522 aa13.26□□□□□ -0.29
CLTCL1-209ENST00000617103 HDGFL2Q7Z4V5 671 aaPredicted RBP13.26□□□□□ -0.29
CLTCL1-209ENST00000617103 CRBNQ96SW2 442 aa13.26□□□□□ -0.29
CLTCL1-209ENST00000617103 NACADO15069 1562 aa13.26□□□□□ -0.29
CLTCL1-209ENST00000617103 CGNL1Q0VF96 1302 aa13.25□□□□□ -0.29
CLTCL1-209ENST00000617103 GOLGA6L1Q8N7Z2 621 aa13.25□□□□□ -0.29
CLTCL1-209ENST00000617103 ABCC8Q09428 1581 aa13.25□□□□□ -0.29
CLTCL1-209ENST00000617103 SAFB2Q14151 953 aaKnown RBP eCLIP13.24□□□□□ -0.291e-12■■■□□ 15
CLTCL1-209ENST00000617103 TRIM6-TRIM34B2RNG4 842 aa13.24□□□□□ -0.29
CLTCL1-209ENST00000617103 CHMP5Q9NZZ3 219 aa13.23□□□□□ -0.29
CLTCL1-209ENST00000617103 ANKRD30AQ9BXX3 1397 aa13.23□□□□□ -0.29
CLTCL1-209ENST00000617103 NFKBIBQ15653 356 aa13.22□□□□□ -0.29
CLTCL1-209ENST00000617103 LMOD2Q6P5Q4 547 aa13.22□□□□□ -0.29
CLTCL1-209ENST00000617103 EIF3AQ14152 1382 aaKnown RBP13.22□□□□□ -0.29
CLTCL1-209ENST00000617103 NOL8Q76FK4 1167 aaKnown RBP13.22□□□□□ -0.29
CLTCL1-209ENST00000617103 FAM43AQ8N2R8 423 aa13.21□□□□□ -0.29
CLTCL1-209ENST00000617103 CCDC34Q96HJ3 373 aa13.21□□□□□ -0.29
CLTCL1-209ENST00000617103 CHMP4AQ9BY43 222 aa13.21□□□□□ -0.29
CLTCL1-209ENST00000617103 E9PSI1 815 aa13.21□□□□□ -0.3
CLTCL1-209ENST00000617103 SOX12O15370 315 aa13.21□□□□□ -0.3
CLTCL1-209ENST00000617103 STK31Q9BXU1 1019 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms