RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ARAP3Q8WWN8 1544 aa21.3■■□□□ 1
LINC00540-202ENST00000616974 RICTORQ6R327 1708 aa21.3■■□□□ 1
LINC00540-202ENST00000616974 SUPT6HQ7KZ85 1726 aaKnown RBP21.3■■□□□ 1
LINC00540-202ENST00000616974 NCOA2Q15596 1464 aa21.3■■□□□ 1
LINC00540-202ENST00000616974 PPARGC1BQ86YN6 1023 aaKnown RBP21.29■■□□□ 1
LINC00540-202ENST00000616974 ARHGEF12Q9NZN5 1544 aa21.28■■□□□ 1
LINC00540-202ENST00000616974 ADGRL1O94910 1474 aa21.27■■□□□ 1
LINC00540-202ENST00000616974 SAMD9LQ8IVG5 1584 aa21.26■□□□□ 0.99
LINC00540-202ENST00000616974 MAP3K1Q13233 1512 aa21.26■□□□□ 0.99
LINC00540-202ENST00000616974 CFAP74Q9C0B2 1584 aa21.26■□□□□ 0.99
LINC00540-202ENST00000616974 ZNF644Q9H582 1327 aaPredicted RBP21.26■□□□□ 0.99
LINC00540-202ENST00000616974 ZNF777Q9ULD5 760 aaPredicted RBP21.26■□□□□ 0.99
LINC00540-202ENST00000616974 SCAPERQ9BY12 1400 aa21.24■□□□□ 0.99
LINC00540-202ENST00000616974 CCNB3Q8WWL7 1395 aa21.24■□□□□ 0.99
LINC00540-202ENST00000616974 EFCAB2Q5VUJ9 269 aa21.23■□□□□ 0.99
LINC00540-202ENST00000616974 ABCC1P33527 1531 aa21.21■□□□□ 0.99
LINC00540-202ENST00000616974 DENND4BO75064 1496 aaPredicted RBP21.21■□□□□ 0.99
LINC00540-202ENST00000616974 ITSN2Q9NZM3 1697 aa21.21■□□□□ 0.99
LINC00540-202ENST00000616974 AFAP1Q8N556 730 aa21.2■□□□□ 0.98
LINC00540-202ENST00000616974 TRAPPC8Q9Y2L5 1435 aa21.19■□□□□ 0.98
LINC00540-202ENST00000616974 SYCP2Q9BX26 1530 aa21.19■□□□□ 0.98
LINC00540-202ENST00000616974 SIGLEC1Q9BZZ2 1709 aa21.19■□□□□ 0.98
LINC00540-202ENST00000616974 CFDP1Q9UEE9 299 aaPredicted RBP21.19■□□□□ 0.98
LINC00540-202ENST00000616974 POGZQ7Z3K3 1410 aa21.18■□□□□ 0.98
LINC00540-202ENST00000616974 APLP2Q06481 763 aa21.18■□□□□ 0.98
LINC00540-202ENST00000616974 PHLDB1Q86UU1 1377 aa21.18■□□□□ 0.98
LINC00540-202ENST00000616974 YEATS2Q9ULM3 1422 aa21.17■□□□□ 0.98
LINC00540-202ENST00000616974 HNRNPMP52272 730 aaKnown RBP eCLIP21.16■□□□□ 0.98
LINC00540-202ENST00000616974 KDM5CP41229 1560 aa21.11■□□□□ 0.97
LINC00540-202ENST00000616974 ZMYM4Q5VZL5 1548 aa21.11■□□□□ 0.97
LINC00540-202ENST00000616974 CAMSAP2Q08AD1 1489 aa21.11■□□□□ 0.97
LINC00540-202ENST00000616974 MYOM3Q5VTT5 1437 aa21.09■□□□□ 0.97
LINC00540-202ENST00000616974 ARHGEF40Q8TER5 1519 aa21.08■□□□□ 0.97
LINC00540-202ENST00000616974 KIDINS220Q9ULH0 1771 aa21.08■□□□□ 0.97
LINC00540-202ENST00000616974 ZNF518AQ6AHZ1 1483 aa21.08■□□□□ 0.97
LINC00540-202ENST00000616974 MBD5Q9P267 1494 aa21.08■□□□□ 0.97
LINC00540-202ENST00000616974 ABCA6Q8N139 1617 aa21.06■□□□□ 0.96
LINC00540-202ENST00000616974 ZFYVE16Q7Z3T8 1539 aa21.06■□□□□ 0.96
LINC00540-202ENST00000616974 HECW2Q9P2P5 1572 aa21.06■□□□□ 0.96
LINC00540-202ENST00000616974 KDM4FA0A1W2PPD8 638 aa21.04■□□□□ 0.96
LINC00540-202ENST00000616974 DIP2CQ9Y2E4 1556 aa21.03■□□□□ 0.96
LINC00540-202ENST00000616974 PTPN23Q9H3S7 1636 aa21.02■□□□□ 0.96
LINC00540-202ENST00000616974 KIAA1107Q9UPP5 1409 aa21.02■□□□□ 0.96
LINC00540-202ENST00000616974 FGD6Q6ZV73 1430 aa21.01■□□□□ 0.95
LINC00540-202ENST00000616974 MYT1LQ9UL68 1186 aa21■□□□□ 0.95
LINC00540-202ENST00000616974 INO80Q9ULG1 1556 aaPredicted RBP20.99■□□□□ 0.95
LINC00540-202ENST00000616974 PLEKHH2Q8IVE3 1493 aa20.98■□□□□ 0.95
LINC00540-202ENST00000616974 MLH3Q9UHC1 1453 aa20.98■□□□□ 0.95
LINC00540-202ENST00000616974 MIA2Q96PC5 1412 aa20.97■□□□□ 0.95
LINC00540-202ENST00000616974 ATP7AQ04656 1500 aa20.97■□□□□ 0.95
LINC00540-202ENST00000616974 MAGI2Q86UL8 1455 aa20.96■□□□□ 0.95
LINC00540-202ENST00000616974 SPAG9O60271 1321 aaKnown RBP20.95■□□□□ 0.94
LINC00540-202ENST00000616974 CCDC141Q6ZP82 1450 aa20.95■□□□□ 0.94
LINC00540-202ENST00000616974 ARID4BQ4LE39 1312 aaPredicted RBP20.94■□□□□ 0.94
LINC00540-202ENST00000616974 ARHGEF5Q12774 1597 aa20.93■□□□□ 0.94
LINC00540-202ENST00000616974 ATP10AO60312 1499 aa20.93■□□□□ 0.94
LINC00540-202ENST00000616974 ADGBQ8N7X0 1667 aa20.93■□□□□ 0.94
LINC00540-202ENST00000616974 BCORL1Q5H9F3 1711 aa20.92■□□□□ 0.94
LINC00540-202ENST00000616974 MLECQ14165 292 aa20.92■□□□□ 0.94
LINC00540-202ENST00000616974 TCOF1Q13428 1488 aaKnown RBP20.91■□□□□ 0.94
LINC00540-202ENST00000616974 CROCC2H7BZ55 1655 aa20.91■□□□□ 0.94
LINC00540-202ENST00000616974 C9orf84Q5VXU9 1444 aa20.89■□□□□ 0.94
LINC00540-202ENST00000616974 ABCC5O15440 1437 aa20.89■□□□□ 0.93
LINC00540-202ENST00000616974 MADDQ8WXG6 1647 aa20.89■□□□□ 0.93
LINC00540-202ENST00000616974 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.93
LINC00540-202ENST00000616974 DNMT1P26358 1616 aaKnown RBP20.88■□□□□ 0.93
LINC00540-202ENST00000616974 ADAMTSL3P82987 1691 aa20.88■□□□□ 0.93
LINC00540-202ENST00000616974 DAPK1P53355 1430 aa20.86■□□□□ 0.93
LINC00540-202ENST00000616974 CHIC2Q9UKJ5 165 aa20.86■□□□□ 0.93
LINC00540-202ENST00000616974 PTPRKQ15262 1439 aa20.85■□□□□ 0.93
LINC00540-202ENST00000616974 PLXNC1O60486 1568 aa20.85■□□□□ 0.93
LINC00540-202ENST00000616974 REREQ9P2R6 1566 aa20.83■□□□□ 0.92
LINC00540-202ENST00000616974 RIMS1Q86UR5 1692 aaKnown RBP20.83■□□□□ 0.92
LINC00540-202ENST00000616974 A2MP01023 1474 aa20.81■□□□□ 0.92
LINC00540-202ENST00000616974 MAST1Q9Y2H9 1570 aa20.81■□□□□ 0.92
LINC00540-202ENST00000616974 FER1L4A9Z1Z3 1794 aa20.81■□□□□ 0.92
LINC00540-202ENST00000616974 RTEL1-TNFRSF6BF6WH68 1400 aa20.81■□□□□ 0.92
LINC00540-202ENST00000616974 TSPY4P0CV99 314 aa20.8■□□□□ 0.92
LINC00540-202ENST00000616974 TSPY10P0CW01 314 aa20.8■□□□□ 0.92
LINC00540-202ENST00000616974 ITGAEP38570 1179 aa20.8■□□□□ 0.92
LINC00540-202ENST00000616974 PLPPR3Q6T4P5 718 aa20.79■□□□□ 0.92
LINC00540-202ENST00000616974 RSPH4AQ5TD94 716 aa20.77■□□□□ 0.91
LINC00540-202ENST00000616974 AGLP35573 1532 aa20.76■□□□□ 0.91
LINC00540-202ENST00000616974 RRP7BPQ9NSQ0 103 aa20.76■□□□□ 0.91
LINC00540-202ENST00000616974 SHANK2Q9UPX8 1470 aa20.75■□□□□ 0.91
LINC00540-202ENST00000616974 RRBP1Q9P2E9 1410 aaKnown RBP20.75■□□□□ 0.91
LINC00540-202ENST00000616974 DHX29Q7Z478 1369 aaKnown RBP20.74■□□□□ 0.91
LINC00540-202ENST00000616974 PTPRMP28827 1452 aa20.74■□□□□ 0.91
LINC00540-202ENST00000616974 AEBP2Q6ZN18 517 aaPredicted RBP20.73■□□□□ 0.91
LINC00540-202ENST00000616974 GGT6Q6P531 493 aa20.72■□□□□ 0.91
LINC00540-202ENST00000616974 KIF15Q9NS87 1388 aa20.72■□□□□ 0.91
LINC00540-202ENST00000616974 CEBPAP49715 358 aaPredicted RBP20.72■□□□□ 0.91
LINC00540-202ENST00000616974 KIF3BO15066 747 aa20.71■□□□□ 0.91
LINC00540-202ENST00000616974 NCOA1Q15788 1441 aa20.7■□□□□ 0.9
LINC00540-202ENST00000616974 CLTCQ00610 1675 aaKnown RBP20.69■□□□□ 0.9
LINC00540-202ENST00000616974 MROH1Q8NDA8 1641 aa20.68■□□□□ 0.9
LINC00540-202ENST00000616974 ADGRL2O95490 1459 aa20.66■□□□□ 0.9
LINC00540-202ENST00000616974 C3P01024 1663 aa20.66■□□□□ 0.9
LINC00540-202ENST00000616974 CFAP65Q6ZU64 1925 aaKnown RBP20.66■□□□□ 0.9
LINC00540-202ENST00000616974 DUOX2Q9NRD8 1548 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms