RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 SUPT6HQ7KZ85 1726 aaKnown RBP17.04■□□□□ 0.32
MMP28-206ENST00000616383 MTUS2Q5JR59 1369 aa17.02■□□□□ 0.32
MMP28-206ENST00000616383 KIF14Q15058 1648 aa16.99■□□□□ 0.31
MMP28-206ENST00000616383 TROQ12816 1431 aaPredicted RBP16.98■□□□□ 0.31
MMP28-206ENST00000616383 CDK11AQ9UQ88 783 aaPredicted RBP16.96■□□□□ 0.31
MMP28-206ENST00000616383 NCOA2Q15596 1464 aa16.95■□□□□ 0.3
MMP28-206ENST00000616383 ITSN2Q9NZM3 1697 aa16.92■□□□□ 0.3
MMP28-206ENST00000616383 WDR7Q9Y4E6 1490 aa16.92■□□□□ 0.3
MMP28-206ENST00000616383 PLEKHD1A6NEE1 506 aa16.91■□□□□ 0.3
MMP28-206ENST00000616383 MAPKBP1O60336 1514 aa16.91■□□□□ 0.3
MMP28-206ENST00000616383 CDC42BPAQ5VT25 1732 aa16.9■□□□□ 0.3
MMP28-206ENST00000616383 TTC37Q6PGP7 1564 aa16.89■□□□□ 0.3
MMP28-206ENST00000616383 ASXL2Q76L83 1435 aa16.89■□□□□ 0.29
MMP28-206ENST00000616383 MYCNP04198 464 aaPredicted RBP16.89■□□□□ 0.29
MMP28-206ENST00000616383 NPM1P06748 294 aaKnown RBP eCLIP16.89■□□□□ 0.29
MMP28-206ENST00000616383 RBM42Q9BTD8 480 aaKnown RBP16.89■□□□□ 0.29
MMP28-206ENST00000616383 PHLDB1Q86UU1 1377 aa16.89■□□□□ 0.29
MMP28-206ENST00000616383 MYO5CQ9NQX4 1742 aa16.87■□□□□ 0.29
MMP28-206ENST00000616383 ABCC10Q5T3U5 1492 aa16.87■□□□□ 0.29
MMP28-206ENST00000616383 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.86■□□□□ 0.29
MMP28-206ENST00000616383 PREX2Q70Z35 1606 aa16.86■□□□□ 0.29
MMP28-206ENST00000616383 MYOM3Q5VTT5 1437 aa16.86■□□□□ 0.29
MMP28-206ENST00000616383 ABCA9Q8IUA7 1624 aa16.85■□□□□ 0.29
MMP28-206ENST00000616383 RRBP1Q9P2E9 1410 aaKnown RBP16.83■□□□□ 0.28
MMP28-206ENST00000616383 CDC42BPBQ9Y5S2 1711 aa16.83■□□□□ 0.28
MMP28-206ENST00000616383 FGD6Q6ZV73 1430 aa16.82■□□□□ 0.28
MMP28-206ENST00000616383 CCNB3Q8WWL7 1395 aa16.82■□□□□ 0.28
MMP28-206ENST00000616383 POLA2Q14181 598 aa16.82■□□□□ 0.28
MMP28-206ENST00000616383 PTPN23Q9H3S7 1636 aa16.81■□□□□ 0.28
MMP28-206ENST00000616383 TRIM26Q12899 539 aaPredicted RBP16.81■□□□□ 0.28
MMP28-206ENST00000616383 GPATCH8Q9UKJ3 1502 aaKnown RBP16.8■□□□□ 0.28
MMP28-206ENST00000616383 KCNH8Q96L42 1107 aa16.8■□□□□ 0.28
MMP28-206ENST00000616383 DIP2BQ9P265 1576 aa16.79■□□□□ 0.28
MMP28-206ENST00000616383 MIA2Q96PC5 1412 aa16.77■□□□□ 0.27
MMP28-206ENST00000616383 KIF13AQ9H1H9 1805 aa16.77■□□□□ 0.27
MMP28-206ENST00000616383 GLI2P10070 1586 aa16.76■□□□□ 0.27
MMP28-206ENST00000616383 TCOF1Q13428 1488 aaKnown RBP16.75■□□□□ 0.27
MMP28-206ENST00000616383 MAP3K4Q9Y6R4 1608 aa16.75■□□□□ 0.27
MMP28-206ENST00000616383 ARHGAP5Q13017 1502 aa16.75■□□□□ 0.27
MMP28-206ENST00000616383 ARAP3Q8WWN8 1544 aa16.74■□□□□ 0.27
MMP28-206ENST00000616383 SAMD9LQ8IVG5 1584 aa16.73■□□□□ 0.27
MMP28-206ENST00000616383 CAMSAP2Q08AD1 1489 aa16.73■□□□□ 0.27
MMP28-206ENST00000616383 PLCH2O75038 1416 aa16.7■□□□□ 0.26
MMP28-206ENST00000616383 CFAP74Q9C0B2 1584 aa16.7■□□□□ 0.26
MMP28-206ENST00000616383 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.7■□□□□ 0.26
MMP28-206ENST00000616383 FAM50AQ14320 339 aaKnown RBP16.7■□□□□ 0.26
MMP28-206ENST00000616383 PCGF6Q9BYE7 350 aa16.7■□□□□ 0.26
MMP28-206ENST00000616383 CFDP1Q9UEE9 299 aaPredicted RBP16.7■□□□□ 0.26
MMP28-206ENST00000616383 DNMT1P26358 1616 aaKnown RBP16.7■□□□□ 0.26
MMP28-206ENST00000616383 CROCC2H7BZ55 1655 aa16.69■□□□□ 0.26
MMP28-206ENST00000616383 TSPOAP1O95153 1857 aa16.69■□□□□ 0.26
MMP28-206ENST00000616383 PPRC1Q5VV67 1664 aaKnown RBP16.67■□□□□ 0.26
MMP28-206ENST00000616383 CD109Q6YHK3 1445 aa16.66■□□□□ 0.26
MMP28-206ENST00000616383 ABCC1P33527 1531 aa16.65■□□□□ 0.26
MMP28-206ENST00000616383 SLC4A1APQ9BWU0 796 aaKnown RBP16.65■□□□□ 0.26
MMP28-206ENST00000616383 ZNF777Q9ULD5 760 aaPredicted RBP16.65■□□□□ 0.26
MMP28-206ENST00000616383 FANCAO15360 1455 aa16.65■□□□□ 0.26
MMP28-206ENST00000616383 ZNF644Q9H582 1327 aaPredicted RBP16.65■□□□□ 0.26
MMP28-206ENST00000616383 SYCP2Q9BX26 1530 aa16.65■□□□□ 0.26
MMP28-206ENST00000616383 ARHGEF5Q12774 1597 aa16.64■□□□□ 0.25
MMP28-206ENST00000616383 ADGBQ8N7X0 1667 aa16.63■□□□□ 0.25
MMP28-206ENST00000616383 PLEKHH2Q8IVE3 1493 aa16.63■□□□□ 0.25
MMP28-206ENST00000616383 FAM69CQ0P6D2 419 aa16.62■□□□□ 0.25
MMP28-206ENST00000616383 EFCAB2Q5VUJ9 269 aa16.61■□□□□ 0.25
MMP28-206ENST00000616383 CHRDL2Q6WN34 429 aa16.61■□□□□ 0.25
MMP28-206ENST00000616383 ILDR1Q86SU0 546 aaPredicted RBP16.61■□□□□ 0.25
MMP28-206ENST00000616383 DAPK1P53355 1430 aa16.61■□□□□ 0.25
MMP28-206ENST00000616383 ITGAEP38570 1179 aa16.6■□□□□ 0.25
MMP28-206ENST00000616383 NEO1Q92859 1461 aa16.59■□□□□ 0.25
MMP28-206ENST00000616383 MBD5Q9P267 1494 aa16.59■□□□□ 0.25
MMP28-206ENST00000616383 ARHGEF12Q9NZN5 1544 aa16.59■□□□□ 0.25
MMP28-206ENST00000616383 ABCC5O15440 1437 aa16.58■□□□□ 0.24
MMP28-206ENST00000616383 PTPRKQ15262 1439 aa16.58■□□□□ 0.24
MMP28-206ENST00000616383 KIAA1107Q9UPP5 1409 aa16.58■□□□□ 0.24
MMP28-206ENST00000616383 ADGRL1O94910 1474 aa16.58■□□□□ 0.24
MMP28-206ENST00000616383 CCDC141Q6ZP82 1450 aa16.58■□□□□ 0.24
MMP28-206ENST00000616383 GCC2Q8IWJ2 1684 aa16.56■□□□□ 0.24
MMP28-206ENST00000616383 TEX14Q8IWB6 1497 aa16.56■□□□□ 0.24
MMP28-206ENST00000616383 SHANK2Q9UPX8 1470 aa16.56■□□□□ 0.24
MMP28-206ENST00000616383 AKNAQ7Z591 1439 aa16.56■□□□□ 0.24
MMP28-206ENST00000616383 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
MMP28-206ENST00000616383 MAST1Q9Y2H9 1570 aa16.55■□□□□ 0.24
MMP28-206ENST00000616383 HNRNPMP52272 730 aaKnown RBP eCLIP16.53■□□□□ 0.24
MMP28-206ENST00000616383 RICTORQ6R327 1708 aa16.53■□□□□ 0.24
MMP28-206ENST00000616383 C9orf84Q5VXU9 1444 aa16.52■□□□□ 0.23
MMP28-206ENST00000616383 SCAPERQ9BY12 1400 aa16.52■□□□□ 0.23
MMP28-206ENST00000616383 TRAPPC8Q9Y2L5 1435 aa16.52■□□□□ 0.23
MMP28-206ENST00000616383 ADGRL2O95490 1459 aa16.51■□□□□ 0.23
MMP28-206ENST00000616383 INO80Q9ULG1 1556 aaPredicted RBP16.51■□□□□ 0.23
MMP28-206ENST00000616383 ZFYVE16Q7Z3T8 1539 aa16.5■□□□□ 0.23
MMP28-206ENST00000616383 PLXNC1O60486 1568 aa16.49■□□□□ 0.23
MMP28-206ENST00000616383 KDM5CP41229 1560 aa16.49■□□□□ 0.23
MMP28-206ENST00000616383 POGZQ7Z3K3 1410 aa16.49■□□□□ 0.23
MMP28-206ENST00000616383 FRMPD1Q5SYB0 1578 aa16.48■□□□□ 0.23
MMP28-206ENST00000616383 CHIC2Q9UKJ5 165 aa16.48■□□□□ 0.23
MMP28-206ENST00000616383 ZBTB12Q9Y330 459 aaPredicted RBP16.48■□□□□ 0.23
MMP28-206ENST00000616383 ZNF518AQ6AHZ1 1483 aa16.48■□□□□ 0.23
MMP28-206ENST00000616383 RSPH4AQ5TD94 716 aa16.47■□□□□ 0.23
MMP28-206ENST00000616383 ROCK1Q13464 1354 aa16.47■□□□□ 0.23
MMP28-206ENST00000616383 DENND4BO75064 1496 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms