RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ARHGAP5Q13017 1502 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 ARAP3Q8WWN8 1544 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 PLPPR3Q6T4P5 718 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 MYO5CQ9NQX4 1742 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 MTUS2Q5JR59 1369 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 ADGRL1O94910 1474 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 RICTORQ6R327 1708 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 TRAPPC8Q9Y2L5 1435 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 CCDC18Q5T9S5 1454 aa9.09□□□□□ -0.95
CPNE3-208ENST00000614678 GPATCH8Q9UKJ3 1502 aaKnown RBP9.08□□□□□ -0.96
CPNE3-208ENST00000614678 MLECQ14165 292 aa9.08□□□□□ -0.96
CPNE3-208ENST00000614678 AEBP2Q6ZN18 517 aaPredicted RBP9.07□□□□□ -0.96
CPNE3-208ENST00000614678 NEO1Q92859 1461 aa9.07□□□□□ -0.96
CPNE3-208ENST00000614678 DENND4BO75064 1496 aaPredicted RBP9.06□□□□□ -0.96
CPNE3-208ENST00000614678 TIAM1Q13009 1591 aa9.06□□□□□ -0.96
CPNE3-208ENST00000614678 EFCAB2Q5VUJ9 269 aa9.06□□□□□ -0.96
CPNE3-208ENST00000614678 SAMD9LQ8IVG5 1584 aa9.06□□□□□ -0.96
CPNE3-208ENST00000614678 PREX2Q70Z35 1606 aa9.05□□□□□ -0.96
CPNE3-208ENST00000614678 ARID4BQ4LE39 1312 aaPredicted RBP9.05□□□□□ -0.96
CPNE3-208ENST00000614678 CFDP1Q9UEE9 299 aaPredicted RBP9.04□□□□□ -0.96
CPNE3-208ENST00000614678 POGZQ7Z3K3 1410 aa9.04□□□□□ -0.96
CPNE3-208ENST00000614678 NCOA2Q15596 1464 aa9.04□□□□□ -0.96
CPNE3-208ENST00000614678 MYT1LQ9UL68 1186 aa9.04□□□□□ -0.96
CPNE3-208ENST00000614678 SYCP2Q9BX26 1530 aa9.04□□□□□ -0.96
CPNE3-208ENST00000614678 LRRC9Q6ZRR7 1453 aa9.03□□□□□ -0.96
CPNE3-208ENST00000614678 CCNB3Q8WWL7 1395 aa9.03□□□□□ -0.96
CPNE3-208ENST00000614678 ABCC1P33527 1531 aa9.02□□□□□ -0.97
CPNE3-208ENST00000614678 PHLDB1Q86UU1 1377 aa9.01□□□□□ -0.97
CPNE3-208ENST00000614678 EHBP1L1Q8N3D4 1523 aa9.01□□□□□ -0.97
CPNE3-208ENST00000614678 CEBPAP49715 358 aaPredicted RBP9□□□□□ -0.97
CPNE3-208ENST00000614678 ITSN2Q9NZM3 1697 aa9□□□□□ -0.97
CPNE3-208ENST00000614678 ABCA6Q8N139 1617 aa9□□□□□ -0.97
CPNE3-208ENST00000614678 ZFYVE16Q7Z3T8 1539 aa8.99□□□□□ -0.97
CPNE3-208ENST00000614678 ARHGEF40Q8TER5 1519 aa8.99□□□□□ -0.97
CPNE3-208ENST00000614678 KIDINS220Q9ULH0 1771 aa8.99□□□□□ -0.97
CPNE3-208ENST00000614678 CFAP74Q9C0B2 1584 aa8.98□□□□□ -0.97
CPNE3-208ENST00000614678 MBD5Q9P267 1494 aa8.98□□□□□ -0.97
CPNE3-208ENST00000614678 SUPT6HQ7KZ85 1726 aaKnown RBP8.98□□□□□ -0.97
CPNE3-208ENST00000614678 MADDQ8WXG6 1647 aa8.98□□□□□ -0.97
CPNE3-208ENST00000614678 KDM5CP41229 1560 aa8.98□□□□□ -0.97
CPNE3-208ENST00000614678 ZMYM4Q5VZL5 1548 aa8.98□□□□□ -0.97
CPNE3-208ENST00000614678 ZNF518AQ6AHZ1 1483 aa8.97□□□□□ -0.97
CPNE3-208ENST00000614678 DIP2CQ9Y2E4 1556 aa8.97□□□□□ -0.97
CPNE3-208ENST00000614678 CAMSAP2Q08AD1 1489 aa8.97□□□□□ -0.97
CPNE3-208ENST00000614678 BCORL1Q5H9F3 1711 aa8.96□□□□□ -0.98
CPNE3-208ENST00000614678 HECW2Q9P2P5 1572 aa8.96□□□□□ -0.98
CPNE3-208ENST00000614678 ADAMTSL3P82987 1691 aa8.95□□□□□ -0.98
CPNE3-208ENST00000614678 SPAG9O60271 1321 aaKnown RBP8.95□□□□□ -0.98
CPNE3-208ENST00000614678 CHIC2Q9UKJ5 165 aa8.95□□□□□ -0.98
CPNE3-208ENST00000614678 RIMS1Q86UR5 1692 aaKnown RBP8.94□□□□□ -0.98
CPNE3-208ENST00000614678 ATP10AO60312 1499 aa8.94□□□□□ -0.98
CPNE3-208ENST00000614678 APLP2Q06481 763 aa8.94□□□□□ -0.98
CPNE3-208ENST00000614678 PTPRMP28827 1452 aa8.94□□□□□ -0.98
CPNE3-208ENST00000614678 MYOM3Q5VTT5 1437 aa8.93□□□□□ -0.98
CPNE3-208ENST00000614678 HSPA2P54652 639 aa8.93□□□□□ -0.98
CPNE3-208ENST00000614678 MLH3Q9UHC1 1453 aa8.93□□□□□ -0.98
CPNE3-208ENST00000614678 GGT6Q6P531 493 aa8.92□□□□□ -0.98
CPNE3-208ENST00000614678 ATP7AQ04656 1500 aa8.92□□□□□ -0.98
CPNE3-208ENST00000614678 C9orf84Q5VXU9 1444 aa8.92□□□□□ -0.98
CPNE3-208ENST00000614678 ITGAEP38570 1179 aa8.91□□□□□ -0.98
CPNE3-208ENST00000614678 INO80Q9ULG1 1556 aaPredicted RBP8.91□□□□□ -0.98
CPNE3-208ENST00000614678 KIAA1107Q9UPP5 1409 aa8.91□□□□□ -0.98
CPNE3-208ENST00000614678 MAP3K1Q13233 1512 aa8.91□□□□□ -0.98
CPNE3-208ENST00000614678 MAGI2Q86UL8 1455 aa8.91□□□□□ -0.98
CPNE3-208ENST00000614678 FAM50AQ14320 339 aaKnown RBP8.91□□□□□ -0.98
CPNE3-208ENST00000614678 RRP7BPQ9NSQ0 103 aa8.9□□□□□ -0.99
CPNE3-208ENST00000614678 PTPRKQ15262 1439 aa8.89□□□□□ -0.99
CPNE3-208ENST00000614678 FER1L4A9Z1Z3 1794 aa8.89□□□□□ -0.99
CPNE3-208ENST00000614678 FGD6Q6ZV73 1430 aa8.89□□□□□ -0.99
CPNE3-208ENST00000614678 PTPN23Q9H3S7 1636 aa8.89□□□□□ -0.99
CPNE3-208ENST00000614678 ABCC5O15440 1437 aa8.89□□□□□ -0.99
CPNE3-208ENST00000614678 ADGBQ8N7X0 1667 aa8.89□□□□□ -0.99
CPNE3-208ENST00000614678 CCDC141Q6ZP82 1450 aa8.88□□□□□ -0.99
CPNE3-208ENST00000614678 KIF3BO15066 747 aa8.88□□□□□ -0.99
CPNE3-208ENST00000614678 A2MP01023 1474 aa8.88□□□□□ -0.99
CPNE3-208ENST00000614678 FBXO31Q5XUX0 539 aaPredicted RBP8.87□□□□□ -0.99
CPNE3-208ENST00000614678 PLXNC1O60486 1568 aa8.86□□□□□ -0.99
CPNE3-208ENST00000614678 PLEKHH2Q8IVE3 1493 aa8.86□□□□□ -0.99
CPNE3-208ENST00000614678 TSPY4P0CV99 314 aa8.85□□□□□ -0.99
CPNE3-208ENST00000614678 TSPY10P0CW01 314 aa8.85□□□□□ -0.99
CPNE3-208ENST00000614678 CFAP65Q6ZU64 1925 aaKnown RBP8.85□□□□□ -0.99
CPNE3-208ENST00000614678 LMTK3Q96Q04 1460 aa8.85□□□□□ -0.99
CPNE3-208ENST00000614678 DAPK1P53355 1430 aa8.85□□□□□ -0.99
CPNE3-208ENST00000614678 C3P01024 1663 aa8.84□□□□□ -0.99
CPNE3-208ENST00000614678 CLTCQ00610 1675 aaKnown RBP8.84□□□□□ -0.99
CPNE3-208ENST00000614678 MIA2Q96PC5 1412 aa8.84□□□□□ -0.99
CPNE3-208ENST00000614678 DHX29Q7Z478 1369 aaKnown RBP8.84□□□□□ -0.99
CPNE3-208ENST00000614678 ARHGEF5Q12774 1597 aa8.84□□□□□ -0.99
CPNE3-208ENST00000614678 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.84□□□□□ -0.99
CPNE3-208ENST00000614678 ZMYM3Q14202 1370 aa8.83□□□□□ -1
CPNE3-208ENST00000614678 REREQ9P2R6 1566 aa8.82□□□□□ -1
CPNE3-208ENST00000614678 AGLP35573 1532 aa8.82□□□□□ -1
CPNE3-208ENST00000614678 TCOF1Q13428 1488 aaKnown RBP8.82□□□□□ -1
CPNE3-208ENST00000614678 CROCC2H7BZ55 1655 aa8.82□□□□□ -1
CPNE3-208ENST00000614678 DNMT1P26358 1616 aaKnown RBP8.82□□□□□ -1
CPNE3-208ENST00000614678 KIF15Q9NS87 1388 aa8.81□□□□□ -1
CPNE3-208ENST00000614678 RTEL1-TNFRSF6BF6WH68 1400 aa8.81□□□□□ -1
CPNE3-208ENST00000614678 SENP3Q9H4L4 574 aaPredicted RBP8.81□□□□□ -1
CPNE3-208ENST00000614678 MROH1Q8NDA8 1641 aa8.8□□□□□ -1
CPNE3-208ENST00000614678 ESF1Q9H501 851 aaKnown RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms