RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 NPM1P06748 294 aaKnown RBP eCLIP21.5■■□□□ 1.03
USP39-220ENST00000613444 DNMT1P26358 1616 aaKnown RBP21.48■■□□□ 1.03
USP39-220ENST00000613444 ABCA9Q8IUA7 1624 aa21.47■■□□□ 1.03
USP39-220ENST00000613444 MAPKBP1O60336 1514 aa21.46■■□□□ 1.03
USP39-220ENST00000613444 SAMD9LQ8IVG5 1584 aa21.45■■□□□ 1.02
USP39-220ENST00000613444 PLCH2O75038 1416 aa21.44■■□□□ 1.02
USP39-220ENST00000613444 ABCC5O15440 1437 aa21.43■■□□□ 1.02
USP39-220ENST00000613444 DAPK1P53355 1430 aa21.43■■□□□ 1.02
USP39-220ENST00000613444 ARHGAP5Q13017 1502 aa21.42■■□□□ 1.02
USP39-220ENST00000613444 ARAP3Q8WWN8 1544 aa21.42■■□□□ 1.02
USP39-220ENST00000613444 ZNF777Q9ULD5 760 aaPredicted RBP21.41■■□□□ 1.02
USP39-220ENST00000613444 CROCC2H7BZ55 1655 aa21.41■■□□□ 1.02
USP39-220ENST00000613444 SETD5Q9C0A6 1442 aa21.39■■□□□ 1.01
USP39-220ENST00000613444 MBD5Q9P267 1494 aa21.38■■□□□ 1.01
USP39-220ENST00000613444 ARHGEF5Q12774 1597 aa21.37■■□□□ 1.01
USP39-220ENST00000613444 HFM1A2PYH4 1435 aa21.37■■□□□ 1.01
USP39-220ENST00000613444 RAB3GAP2Q9H2M9 1393 aa21.36■■□□□ 1.01
USP39-220ENST00000613444 AKNAQ7Z591 1439 aa21.36■■□□□ 1.01
USP39-220ENST00000613444 NAIPQ13075 1403 aa21.35■■□□□ 1.01
USP39-220ENST00000613444 GCC2Q8IWJ2 1684 aa21.34■■□□□ 1.01
USP39-220ENST00000613444 SYCP2Q9BX26 1530 aa21.33■■□□□ 1.01
USP39-220ENST00000613444 HRCP23327 699 aa21.33■■□□□ 1
USP39-220ENST00000613444 CHIC2Q9UKJ5 165 aa21.33■■□□□ 1
USP39-220ENST00000613444 KIAA1107Q9UPP5 1409 aa21.33■■□□□ 1
USP39-220ENST00000613444 ADGBQ8N7X0 1667 aa21.32■■□□□ 1
USP39-220ENST00000613444 ROCK1Q13464 1354 aa21.32■■□□□ 1
USP39-220ENST00000613444 PLEKHH2Q8IVE3 1493 aa21.32■■□□□ 1
USP39-220ENST00000613444 ABCC1P33527 1531 aa21.31■■□□□ 1
USP39-220ENST00000613444 ARHGEF12Q9NZN5 1544 aa21.31■■□□□ 1
USP39-220ENST00000613444 EFCAB2Q5VUJ9 269 aa21.31■■□□□ 1
USP39-220ENST00000613444 SHANK2Q9UPX8 1470 aa21.31■■□□□ 1
USP39-220ENST00000613444 HNRNPMP52272 730 aaKnown RBP eCLIP21.31■■□□□ 1
USP39-220ENST00000613444 ADGRL2O95490 1459 aa21.3■■□□□ 1
USP39-220ENST00000613444 GLI2P10070 1586 aa21.29■■□□□ 1
USP39-220ENST00000613444 FANCAO15360 1455 aa21.29■■□□□ 1
USP39-220ENST00000613444 CCDC141Q6ZP82 1450 aa21.29■■□□□ 1
USP39-220ENST00000613444 CCER1Q8TC90 406 aaPredicted RBP21.28■■□□□ 1
USP39-220ENST00000613444 RRP7BPQ9NSQ0 103 aa21.27■■□□□ 1
USP39-220ENST00000613444 MAP3K4Q9Y6R4 1608 aa21.27■■□□□ 1
USP39-220ENST00000613444 CD109Q6YHK3 1445 aa21.27■■□□□ 1
USP39-220ENST00000613444 DIP2BQ9P265 1576 aa21.26■□□□□ 0.99
USP39-220ENST00000613444 NCOA1Q15788 1441 aa21.26■□□□□ 0.99
USP39-220ENST00000613444 C9orf84Q5VXU9 1444 aa21.26■□□□□ 0.99
USP39-220ENST00000613444 RSPH4AQ5TD94 716 aa21.26■□□□□ 0.99
USP39-220ENST00000613444 KDM6BO15054 1643 aa21.25■□□□□ 0.99
USP39-220ENST00000613444 DHX57Q6P158 1386 aaKnown RBP21.25■□□□□ 0.99
USP39-220ENST00000613444 MAST1Q9Y2H9 1570 aa21.25■□□□□ 0.99
USP39-220ENST00000613444 CFAP74Q9C0B2 1584 aa21.21■□□□□ 0.99
USP39-220ENST00000613444 TRAPPC8Q9Y2L5 1435 aa21.21■□□□□ 0.99
USP39-220ENST00000613444 ANKRD30AQ9BXX3 1397 aa21.2■□□□□ 0.98
USP39-220ENST00000613444 TSPY4P0CV99 314 aa21.2■□□□□ 0.98
USP39-220ENST00000613444 TSPY10P0CW01 314 aa21.2■□□□□ 0.98
USP39-220ENST00000613444 ADGRL1O94910 1474 aa21.19■□□□□ 0.98
USP39-220ENST00000613444 KIF13AQ9H1H9 1805 aa21.18■□□□□ 0.98
USP39-220ENST00000613444 PLXNC1O60486 1568 aa21.16■□□□□ 0.98
USP39-220ENST00000613444 SCAPERQ9BY12 1400 aa21.15■□□□□ 0.98
USP39-220ENST00000613444 PPRC1Q5VV67 1664 aaKnown RBP21.15■□□□□ 0.98
USP39-220ENST00000613444 NEO1Q92859 1461 aa21.15■□□□□ 0.98
USP39-220ENST00000613444 FAM69CQ0P6D2 419 aa21.14■□□□□ 0.98
USP39-220ENST00000613444 DNAJC5Q9H3Z4 198 aa21.14■□□□□ 0.98
USP39-220ENST00000613444 ZEB1P37275 1124 aaPredicted RBP21.13■□□□□ 0.97
USP39-220ENST00000613444 KIF15Q9NS87 1388 aa21.12■□□□□ 0.97
USP39-220ENST00000613444 AFAP1Q8N556 730 aa21.12■□□□□ 0.97
USP39-220ENST00000613444 ZFYVE16Q7Z3T8 1539 aa21.11■□□□□ 0.97
USP39-220ENST00000613444 ANKRD50Q9ULJ7 1429 aa21.11■□□□□ 0.97
USP39-220ENST00000613444 INO80Q9ULG1 1556 aaPredicted RBP21.1■□□□□ 0.97
USP39-220ENST00000613444 TSPOAP1O95153 1857 aa21.1■□□□□ 0.97
USP39-220ENST00000613444 CLSPNQ9HAW4 1339 aa21.1■□□□□ 0.97
USP39-220ENST00000613444 RTEL1-TNFRSF6BF6WH68 1400 aa21.1■□□□□ 0.97
USP39-220ENST00000613444 KDM5CP41229 1560 aa21.07■□□□□ 0.96
USP39-220ENST00000613444 ZNF518AQ6AHZ1 1483 aa21.07■□□□□ 0.96
USP39-220ENST00000613444 POGZQ7Z3K3 1410 aa21.07■□□□□ 0.96
USP39-220ENST00000613444 SPAG9O60271 1321 aaKnown RBP21.06■□□□□ 0.96
USP39-220ENST00000613444 ATP7AQ04656 1500 aa21.06■□□□□ 0.96
USP39-220ENST00000613444 KIDINS220Q9ULH0 1771 aa21.05■□□□□ 0.96
USP39-220ENST00000613444 DENND4BO75064 1496 aaPredicted RBP21.05■□□□□ 0.96
USP39-220ENST00000613444 ACIN1Q9UKV3 1341 aaKnown RBP21.04■□□□□ 0.96
USP39-220ENST00000613444 DUOX2Q9NRD8 1548 aa21.04■□□□□ 0.96
USP39-220ENST00000613444 RICTORQ6R327 1708 aa21.04■□□□□ 0.96
USP39-220ENST00000613444 TEX14Q8IWB6 1497 aa21■□□□□ 0.95
USP39-220ENST00000613444 TRIM52Q96A61 297 aa21■□□□□ 0.95
USP39-220ENST00000613444 PZPP20742 1482 aa20.99■□□□□ 0.95
USP39-220ENST00000613444 MLH3Q9UHC1 1453 aa20.99■□□□□ 0.95
USP39-220ENST00000613444 ERBINQ96RT1 1412 aa20.99■□□□□ 0.95
USP39-220ENST00000613444 FRMPD1Q5SYB0 1578 aa20.98■□□□□ 0.95
USP39-220ENST00000613444 HECW2Q9P2P5 1572 aa20.98■□□□□ 0.95
USP39-220ENST00000613444 KDM5DQ9BY66 1539 aa20.98■□□□□ 0.95
USP39-220ENST00000613444 UNC13BO14795 1591 aa20.97■□□□□ 0.95
USP39-220ENST00000613444 MPHOSPH9Q99550 1183 aa20.96■□□□□ 0.95
USP39-220ENST00000613444 RAPGEF3O95398 923 aa20.96■□□□□ 0.95
USP39-220ENST00000613444 ABCA6Q8N139 1617 aa20.92■□□□□ 0.94
USP39-220ENST00000613444 MAGI2Q86UL8 1455 aa20.92■□□□□ 0.94
USP39-220ENST00000613444 ZMYM4Q5VZL5 1548 aa20.91■□□□□ 0.94
USP39-220ENST00000613444 NUP155O75694 1391 aa20.91■□□□□ 0.94
USP39-220ENST00000613444 DHX29Q7Z478 1369 aaKnown RBP20.9■□□□□ 0.94
USP39-220ENST00000613444 DEPDC5O75140 1603 aa20.9■□□□□ 0.94
USP39-220ENST00000613444 EIF2AK4Q9P2K8 1649 aaKnown RBP20.9■□□□□ 0.94
USP39-220ENST00000613444 SLC4A1APQ9BWU0 796 aaKnown RBP20.89■□□□□ 0.93
USP39-220ENST00000613444 IQGAP3Q86VI3 1631 aa20.88■□□□□ 0.93
USP39-220ENST00000613444 COL17A1Q9UMD9 1497 aaPredicted RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms