RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 ATP1B4Q9UN42 357 aaPredicted RBP13.66□□□□□ -0.22
CCDC47-207ENST00000612558 TIAM1Q13009 1591 aa13.65□□□□□ -0.22
CCDC47-207ENST00000612558 CHD1O14646 1710 aa13.65□□□□□ -0.22
CCDC47-207ENST00000612558 KIAA0556O60303 1618 aa13.64□□□□□ -0.23
CCDC47-207ENST00000612558 CARMIL2Q6F5E8 1435 aa13.62□□□□□ -0.23
CCDC47-207ENST00000612558 LHX8Q68G74 356 aa13.61□□□□□ -0.23
CCDC47-207ENST00000612558 CFAP43Q8NDM7 1665 aa13.61□□□□□ -0.23
CCDC47-207ENST00000612558 LRRC9Q6ZRR7 1453 aa13.6□□□□□ -0.23
CCDC47-207ENST00000612558 HECW1Q76N89 1606 aa13.57□□□□□ -0.24
CCDC47-207ENST00000612558 CCDC18Q5T9S5 1454 aa13.55□□□□□ -0.24
CCDC47-207ENST00000612558 PRG4Q92954 1404 aaPredicted RBP13.54□□□□□ -0.24
CCDC47-207ENST00000612558 SPDYE4A6NLX3 237 aa13.54□□□□□ -0.24
CCDC47-207ENST00000612558 LRRIQ1Q96JM4 1722 aa13.53□□□□□ -0.24
CCDC47-207ENST00000612558 SHROOM2Q13796 1616 aa13.53□□□□□ -0.24
CCDC47-207ENST00000612558 EPRSP07814 1512 aaKnown RBP13.52□□□□□ -0.24
CCDC47-207ENST00000612558 MTUS2Q5JR59 1369 aa13.52□□□□□ -0.25
CCDC47-207ENST00000612558 RRBP1Q9P2E9 1410 aaKnown RBP13.52□□□□□ -0.25
CCDC47-207ENST00000612558 RAPGEF6Q8TEU7 1601 aa13.51□□□□□ -0.25
CCDC47-207ENST00000612558 CLASP1Q7Z460 1538 aa13.5□□□□□ -0.25
CCDC47-207ENST00000612558 DCBLD2Q96PD2 775 aa13.49□□□□□ -0.25
CCDC47-207ENST00000612558 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
CCDC47-207ENST00000612558 ZRANB1Q9UGI0 708 aa13.49□□□□□ -0.25
CCDC47-207ENST00000612558 NUP153P49790 1475 aaKnown RBP13.48□□□□□ -0.25
CCDC47-207ENST00000612558 PHLDB1Q86UU1 1377 aa13.48□□□□□ -0.25
CCDC47-207ENST00000612558 CCNB3Q8WWL7 1395 aa13.48□□□□□ -0.25
CCDC47-207ENST00000612558 PTPRGP23470 1445 aa13.48□□□□□ -0.25
CCDC47-207ENST00000612558 HRCP23327 699 aa13.48□□□□□ -0.25
CCDC47-207ENST00000612558 PLB1Q6P1J6 1458 aa13.48□□□□□ -0.25
CCDC47-207ENST00000612558 EHBP1L1Q8N3D4 1523 aa13.48□□□□□ -0.25
CCDC47-207ENST00000612558 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
CCDC47-207ENST00000612558 CDK11AQ9UQ88 783 aaPredicted RBP13.46□□□□□ -0.25
CCDC47-207ENST00000612558 CDK13Q14004 1512 aaKnown RBP13.46□□□□□ -0.25
CCDC47-207ENST00000612558 PAK3O75914 559 aaPredicted RBP13.45□□□□□ -0.26
CCDC47-207ENST00000612558 ABCA8O94911 1581 aa13.45□□□□□ -0.26
CCDC47-207ENST00000612558 ARID3CA6NKF2 412 aa13.45□□□□□ -0.26
CCDC47-207ENST00000612558 MAGI3Q5TCQ9 1506 aa13.44□□□□□ -0.26
CCDC47-207ENST00000612558 SUPT6HQ7KZ85 1726 aaKnown RBP13.44□□□□□ -0.26
CCDC47-207ENST00000612558 NCOA2Q15596 1464 aa13.43□□□□□ -0.26
CCDC47-207ENST00000612558 POTEIP0CG38 1075 aa13.42□□□□□ -0.26
CCDC47-207ENST00000612558 ERCC6L2Q5T890 1561 aa13.41□□□□□ -0.26
CCDC47-207ENST00000612558 ARHGEF11O15085 1522 aa13.4□□□□□ -0.26
CCDC47-207ENST00000612558 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC47-207ENST00000612558 NPM1P06748 294 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC47-207ENST00000612558 MYOM3Q5VTT5 1437 aa13.39□□□□□ -0.27
CCDC47-207ENST00000612558 UACAQ9BZF9 1416 aa13.39□□□□□ -0.27
CCDC47-207ENST00000612558 FGD6Q6ZV73 1430 aa13.39□□□□□ -0.27
CCDC47-207ENST00000612558 FAM50AQ14320 339 aaKnown RBP13.38□□□□□ -0.27
CCDC47-207ENST00000612558 ATP10BO94823 1461 aa13.38□□□□□ -0.27
CCDC47-207ENST00000612558 ZEB1P37275 1124 aaPredicted RBP13.37□□□□□ -0.27
CCDC47-207ENST00000612558 TROQ12816 1431 aaPredicted RBP13.37□□□□□ -0.27
CCDC47-207ENST00000612558 PLEKHD1A6NEE1 506 aa13.37□□□□□ -0.27
CCDC47-207ENST00000612558 ITGAEP38570 1179 aa13.34□□□□□ -0.27
CCDC47-207ENST00000612558 CCER1Q8TC90 406 aaPredicted RBP13.34□□□□□ -0.27
CCDC47-207ENST00000612558 MIA2Q96PC5 1412 aa13.33□□□□□ -0.27
CCDC47-207ENST00000612558 ABCC2Q92887 1545 aa13.33□□□□□ -0.27
CCDC47-207ENST00000612558 UHRF1BP1LA0JNW5 1464 aa13.32□□□□□ -0.28
CCDC47-207ENST00000612558 ADCY10Q96PN6 1610 aa13.31□□□□□ -0.28
CCDC47-207ENST00000612558 PTPN23Q9H3S7 1636 aa13.3□□□□□ -0.28
CCDC47-207ENST00000612558 TCOF1Q13428 1488 aaKnown RBP13.3□□□□□ -0.28
CCDC47-207ENST00000612558 KIF14Q15058 1648 aa13.26□□□□□ -0.29
CCDC47-207ENST00000612558 GALR2O43603 387 aaPredicted RBP13.26□□□□□ -0.29
CCDC47-207ENST00000612558 KDM5BQ9UGL1 1544 aa13.26□□□□□ -0.29
CCDC47-207ENST00000612558 GPATCH8Q9UKJ3 1502 aaKnown RBP13.25□□□□□ -0.29
CCDC47-207ENST00000612558 SETD5Q9C0A6 1442 aa13.25□□□□□ -0.29
CCDC47-207ENST00000612558 CFDP1Q9UEE9 299 aaPredicted RBP13.24□□□□□ -0.29
CCDC47-207ENST00000612558 ITSN2Q9NZM3 1697 aa13.24□□□□□ -0.29
CCDC47-207ENST00000612558 ABCC10Q5T3U5 1492 aa13.24□□□□□ -0.29
CCDC47-207ENST00000612558 PTPRKQ15262 1439 aa13.23□□□□□ -0.29
CCDC47-207ENST00000612558 ZCCHC11Q5TAX3 1644 aaKnown RBP13.22□□□□□ -0.29
CCDC47-207ENST00000612558 RAB3GAP2Q9H2M9 1393 aa13.22□□□□□ -0.29
CCDC47-207ENST00000612558 PHF12Q96QT6 1004 aa13.2□□□□□ -0.3
CCDC47-207ENST00000612558 ZNF644Q9H582 1327 aaPredicted RBP13.2□□□□□ -0.3
CCDC47-207ENST00000612558 CDC42BPAQ5VT25 1732 aa13.19□□□□□ -0.3
CCDC47-207ENST00000612558 HFM1A2PYH4 1435 aa13.19□□□□□ -0.3
CCDC47-207ENST00000612558 MNX1P50219 401 aaPredicted RBP13.19□□□□□ -0.3
CCDC47-207ENST00000612558 CAMSAP2Q08AD1 1489 aa13.18□□□□□ -0.3
CCDC47-207ENST00000612558 DHX57Q6P158 1386 aaKnown RBP13.18□□□□□ -0.3
CCDC47-207ENST00000612558 CLSPNQ9HAW4 1339 aa13.18□□□□□ -0.3
CCDC47-207ENST00000612558 ZNF777Q9ULD5 760 aaPredicted RBP13.18□□□□□ -0.3
CCDC47-207ENST00000612558 KCNH8Q96L42 1107 aa13.17□□□□□ -0.3
CCDC47-207ENST00000612558 DAPK1P53355 1430 aa13.17□□□□□ -0.3
CCDC47-207ENST00000612558 ABCC5O15440 1437 aa13.16□□□□□ -0.3
CCDC47-207ENST00000612558 DNMT1P26358 1616 aaKnown RBP13.16□□□□□ -0.3
CCDC47-207ENST00000612558 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.16□□□□□ -0.3
CCDC47-207ENST00000612558 CHIC2Q9UKJ5 165 aa13.15□□□□□ -0.3
CCDC47-207ENST00000612558 NAIPQ13075 1403 aa13.15□□□□□ -0.3
CCDC47-207ENST00000612558 AKNAQ7Z591 1439 aa13.15□□□□□ -0.3
CCDC47-207ENST00000612558 ROCK1Q13464 1354 aa13.14□□□□□ -0.31
CCDC47-207ENST00000612558 PREX2Q70Z35 1606 aa13.14□□□□□ -0.31
CCDC47-207ENST00000612558 WDR7Q9Y4E6 1490 aa13.13□□□□□ -0.31
CCDC47-207ENST00000612558 TTC37Q6PGP7 1564 aa13.13□□□□□ -0.31
CCDC47-207ENST00000612558 PLEKHG5O94827 1062 aa13.13□□□□□ -0.31
CCDC47-207ENST00000612558 RRP7BPQ9NSQ0 103 aa13.13□□□□□ -0.31
CCDC47-207ENST00000612558 CDC42BPBQ9Y5S2 1711 aa13.13□□□□□ -0.31
CCDC47-207ENST00000612558 RSPH4AQ5TD94 716 aa13.11□□□□□ -0.31
CCDC47-207ENST00000612558 PLCH2O75038 1416 aa13.11□□□□□ -0.31
CCDC47-207ENST00000612558 MYO5CQ9NQX4 1742 aa13.11□□□□□ -0.31
CCDC47-207ENST00000612558 ASXL2Q76L83 1435 aa13.1□□□□□ -0.31
CCDC47-207ENST00000612558 PROM2Q8N271 834 aa13.1□□□□□ -0.31
CCDC47-207ENST00000612558 ARHGAP5Q13017 1502 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms