RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 COL17A1Q9UMD9 1497 aaPredicted RBP13.78□□□□□ -0.2
SMAD4-217ENST00000611848 LRRC9Q6ZRR7 1453 aa13.77□□□□□ -0.2
SMAD4-217ENST00000611848 AKNAQ7Z591 1439 aa13.77□□□□□ -0.2
SMAD4-217ENST00000611848 CDC42BPBQ9Y5S2 1711 aa13.76□□□□□ -0.21
SMAD4-217ENST00000611848 ARHGAP5Q13017 1502 aa13.76□□□□□ -0.21
SMAD4-217ENST00000611848 CDC42BPAQ5VT25 1732 aa13.76□□□□□ -0.21
SMAD4-217ENST00000611848 SUPT6HQ7KZ85 1726 aaKnown RBP13.76□□□□□ -0.21
SMAD4-217ENST00000611848 PREX2Q70Z35 1606 aa13.75□□□□□ -0.21
SMAD4-217ENST00000611848 CCNB3Q8WWL7 1395 aa13.75□□□□□ -0.21
SMAD4-217ENST00000611848 GPATCH8Q9UKJ3 1502 aaKnown RBP13.74□□□□□ -0.21
SMAD4-217ENST00000611848 KANK4Q5T7N3 995 aaPredicted RBP13.74□□□□□ -0.21
SMAD4-217ENST00000611848 ADGRL1O94910 1474 aa13.73□□□□□ -0.21
SMAD4-217ENST00000611848 DENND4BO75064 1496 aaPredicted RBP13.72□□□□□ -0.21
SMAD4-217ENST00000611848 NCOA2Q15596 1464 aa13.72□□□□□ -0.21
SMAD4-217ENST00000611848 RAPGEF3O95398 923 aa13.71□□□□□ -0.22
SMAD4-217ENST00000611848 CFDP1Q9UEE9 299 aaPredicted RBP13.71□□□□□ -0.22
SMAD4-217ENST00000611848 ITSN2Q9NZM3 1697 aa13.71□□□□□ -0.22
SMAD4-217ENST00000611848 SCAPERQ9BY12 1400 aa13.7□□□□□ -0.22
SMAD4-217ENST00000611848 RICTORQ6R327 1708 aa13.69□□□□□ -0.22
SMAD4-217ENST00000611848 ZNF777Q9ULD5 760 aaPredicted RBP13.68□□□□□ -0.22
SMAD4-217ENST00000611848 FRMPD1Q5SYB0 1578 aa13.67□□□□□ -0.22
SMAD4-217ENST00000611848 POGZQ7Z3K3 1410 aa13.67□□□□□ -0.22
SMAD4-217ENST00000611848 PLEKHH2Q8IVE3 1493 aa13.67□□□□□ -0.22
SMAD4-217ENST00000611848 ABCC1P33527 1531 aa13.66□□□□□ -0.22
SMAD4-217ENST00000611848 SAMD9LQ8IVG5 1584 aa13.65□□□□□ -0.22
SMAD4-217ENST00000611848 KIAA1107Q9UPP5 1409 aa13.65□□□□□ -0.22
SMAD4-217ENST00000611848 ZNF518AQ6AHZ1 1483 aa13.65□□□□□ -0.22
SMAD4-217ENST00000611848 ZMYM4Q5VZL5 1548 aa13.64□□□□□ -0.23
SMAD4-217ENST00000611848 MAGI2Q86UL8 1455 aa13.64□□□□□ -0.23
SMAD4-217ENST00000611848 MYOM3Q5VTT5 1437 aa13.63□□□□□ -0.23
SMAD4-217ENST00000611848 ARHGEF12Q9NZN5 1544 aa13.63□□□□□ -0.23
SMAD4-217ENST00000611848 PCGF6Q9BYE7 350 aa13.63□□□□□ -0.23
SMAD4-217ENST00000611848 AFAP1Q8N556 730 aa13.62□□□□□ -0.23
SMAD4-217ENST00000611848 MIA2Q96PC5 1412 aa13.62□□□□□ -0.23
SMAD4-217ENST00000611848 KDM5CP41229 1560 aa13.62□□□□□ -0.23
SMAD4-217ENST00000611848 TRAPPC8Q9Y2L5 1435 aa13.61□□□□□ -0.23
SMAD4-217ENST00000611848 SYCP2Q9BX26 1530 aa13.61□□□□□ -0.23
SMAD4-217ENST00000611848 HNRNPMP52272 730 aaKnown RBP eCLIP13.61□□□□□ -0.23
SMAD4-217ENST00000611848 ZNF644Q9H582 1327 aaPredicted RBP13.61□□□□□ -0.23
SMAD4-217ENST00000611848 RSPH4AQ5TD94 716 aa13.6□□□□□ -0.23
SMAD4-217ENST00000611848 CAMSAP2Q08AD1 1489 aa13.59□□□□□ -0.23
SMAD4-217ENST00000611848 ZFYVE16Q7Z3T8 1539 aa13.59□□□□□ -0.23
SMAD4-217ENST00000611848 ARHGEF40Q8TER5 1519 aa13.59□□□□□ -0.23
SMAD4-217ENST00000611848 MLH3Q9UHC1 1453 aa13.58□□□□□ -0.23
SMAD4-217ENST00000611848 HECW2Q9P2P5 1572 aa13.58□□□□□ -0.24
SMAD4-217ENST00000611848 MBD5Q9P267 1494 aa13.58□□□□□ -0.24
SMAD4-217ENST00000611848 MYT1LQ9UL68 1186 aa13.57□□□□□ -0.24
SMAD4-217ENST00000611848 TRIM26Q12899 539 aaPredicted RBP13.57□□□□□ -0.24
SMAD4-217ENST00000611848 YEATS2Q9ULM3 1422 aa13.56□□□□□ -0.24
SMAD4-217ENST00000611848 SPAG9O60271 1321 aaKnown RBP13.56□□□□□ -0.24
SMAD4-217ENST00000611848 FGD6Q6ZV73 1430 aa13.56□□□□□ -0.24
SMAD4-217ENST00000611848 ARHGEF5Q12774 1597 aa13.55□□□□□ -0.24
SMAD4-217ENST00000611848 ATP10AO60312 1499 aa13.54□□□□□ -0.24
SMAD4-217ENST00000611848 CCDC141Q6ZP82 1450 aa13.54□□□□□ -0.24
SMAD4-217ENST00000611848 PTPN23Q9H3S7 1636 aa13.54□□□□□ -0.24
SMAD4-217ENST00000611848 KIDINS220Q9ULH0 1771 aa13.54□□□□□ -0.24
SMAD4-217ENST00000611848 TSPY4P0CV99 314 aa13.53□□□□□ -0.24
SMAD4-217ENST00000611848 TSPY10P0CW01 314 aa13.53□□□□□ -0.24
SMAD4-217ENST00000611848 HRCP23327 699 aa13.53□□□□□ -0.24
SMAD4-217ENST00000611848 PPARGC1BQ86YN6 1023 aaKnown RBP13.53□□□□□ -0.24
SMAD4-217ENST00000611848 TCOF1Q13428 1488 aaKnown RBP13.52□□□□□ -0.24
SMAD4-217ENST00000611848 RTEL1-TNFRSF6BF6WH68 1400 aa13.52□□□□□ -0.24
SMAD4-217ENST00000611848 C9orf84Q5VXU9 1444 aa13.52□□□□□ -0.24
SMAD4-217ENST00000611848 ATP7AQ04656 1500 aa13.52□□□□□ -0.25
SMAD4-217ENST00000611848 DIP2CQ9Y2E4 1556 aa13.52□□□□□ -0.25
SMAD4-217ENST00000611848 INO80Q9ULG1 1556 aaPredicted RBP13.51□□□□□ -0.25
SMAD4-217ENST00000611848 ARID4BQ4LE39 1312 aaPredicted RBP13.51□□□□□ -0.25
SMAD4-217ENST00000611848 ABCA6Q8N139 1617 aa13.51□□□□□ -0.25
SMAD4-217ENST00000611848 REREQ9P2R6 1566 aa13.5□□□□□ -0.25
SMAD4-217ENST00000611848 MSH5O43196 834 aa13.5□□□□□ -0.25
SMAD4-217ENST00000611848 KDM4FA0A1W2PPD8 638 aa13.49□□□□□ -0.25
SMAD4-217ENST00000611848 FAM50AQ14320 339 aaKnown RBP13.47□□□□□ -0.25
SMAD4-217ENST00000611848 MAST1Q9Y2H9 1570 aa13.47□□□□□ -0.25
SMAD4-217ENST00000611848 BCORL1Q5H9F3 1711 aa13.47□□□□□ -0.25
SMAD4-217ENST00000611848 DNMT1P26358 1616 aaKnown RBP13.46□□□□□ -0.25
SMAD4-217ENST00000611848 ADGBQ8N7X0 1667 aa13.46□□□□□ -0.25
SMAD4-217ENST00000611848 SIGLEC1Q9BZZ2 1709 aa13.46□□□□□ -0.25
SMAD4-217ENST00000611848 ABCC5O15440 1437 aa13.46□□□□□ -0.26
SMAD4-217ENST00000611848 DAPK1P53355 1430 aa13.46□□□□□ -0.26
SMAD4-217ENST00000611848 SHANK2Q9UPX8 1470 aa13.46□□□□□ -0.26
SMAD4-217ENST00000611848 AGLP35573 1532 aa13.45□□□□□ -0.26
SMAD4-217ENST00000611848 A2MP01023 1474 aa13.45□□□□□ -0.26
SMAD4-217ENST00000611848 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.45□□□□□ -0.26
SMAD4-217ENST00000611848 CROCC2H7BZ55 1655 aa13.44□□□□□ -0.26
SMAD4-217ENST00000611848 ADAMTSL3P82987 1691 aa13.44□□□□□ -0.26
SMAD4-217ENST00000611848 DHX29Q7Z478 1369 aaKnown RBP13.43□□□□□ -0.26
SMAD4-217ENST00000611848 PLXNC1O60486 1568 aa13.43□□□□□ -0.26
SMAD4-217ENST00000611848 MLECQ14165 292 aa13.42□□□□□ -0.26
SMAD4-217ENST00000611848 POTEDQ86YR6 584 aa13.42□□□□□ -0.26
SMAD4-217ENST00000611848 RRBP1Q9P2E9 1410 aaKnown RBP13.42□□□□□ -0.26
SMAD4-217ENST00000611848 ANKRD30AQ9BXX3 1397 aa13.39□□□□□ -0.27
SMAD4-217ENST00000611848 MADDQ8WXG6 1647 aa13.39□□□□□ -0.27
SMAD4-217ENST00000611848 CHIC2Q9UKJ5 165 aa13.39□□□□□ -0.27
SMAD4-217ENST00000611848 FER1L4A9Z1Z3 1794 aa13.38□□□□□ -0.27
SMAD4-217ENST00000611848 DUOX2Q9NRD8 1548 aa13.38□□□□□ -0.27
SMAD4-217ENST00000611848 ADGRL2O95490 1459 aa13.37□□□□□ -0.27
SMAD4-217ENST00000611848 NCOA1Q15788 1441 aa13.37□□□□□ -0.27
SMAD4-217ENST00000611848 KIF15Q9NS87 1388 aa13.37□□□□□ -0.27
SMAD4-217ENST00000611848 KIF3BO15066 747 aa13.36□□□□□ -0.27
SMAD4-217ENST00000611848 PIAS4Q8N2W9 510 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms