RNA–Protein interactions for RNA: ENST00000607212.1

CTSA-216, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 590 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-216ENST00000607212 SCAPERQ9BY12 1400 aa24.41■■□□□ 1.5
CTSA-216ENST00000607212 PLCH2O75038 1416 aa24.4■■□□□ 1.5
CTSA-216ENST00000607212 YEATS2Q9ULM3 1422 aa24.39■■□□□ 1.5
CTSA-216ENST00000607212 EFCAB2Q5VUJ9 269 aa24.38■■□□□ 1.49
CTSA-216ENST00000607212 MYT1LQ9UL68 1186 aa24.38■■□□□ 1.49
CTSA-216ENST00000607212 KIF14Q15058 1648 aa24.38■■□□□ 1.49
CTSA-216ENST00000607212 MAGI2Q86UL8 1455 aa24.37■■□□□ 1.49
CTSA-216ENST00000607212 PCF11O94913 1555 aaKnown RBP24.37■■□□□ 1.49
CTSA-216ENST00000607212 CLIP1P30622 1438 aa24.36■■□□□ 1.49
CTSA-216ENST00000607212 ARHGAP5Q13017 1502 aa24.34■■□□□ 1.49
CTSA-216ENST00000607212 FER1L4A9Z1Z3 1794 aa24.33■■□□□ 1.49
CTSA-216ENST00000607212 TROQ12816 1431 aaPredicted RBP24.32■■□□□ 1.48
CTSA-216ENST00000607212 SIGLEC1Q9BZZ2 1709 aa24.32■■□□□ 1.48
CTSA-216ENST00000607212 LMTK3Q96Q04 1460 aa24.3■■□□□ 1.48
CTSA-216ENST00000607212 LRRIQ1Q96JM4 1722 aa24.3■■□□□ 1.48
CTSA-216ENST00000607212 C9orf84Q5VXU9 1444 aa24.27■■□□□ 1.48
CTSA-216ENST00000607212 ATP10AO60312 1499 aa24.26■■□□□ 1.47
CTSA-216ENST00000607212 HSPA2P54652 639 aa24.26■■□□□ 1.47
CTSA-216ENST00000607212 FBXO41Q8TF61 875 aa24.24■■□□□ 1.47
CTSA-216ENST00000607212 ZNF518AQ6AHZ1 1483 aa24.24■■□□□ 1.47
CTSA-216ENST00000607212 CCDC18Q5T9S5 1454 aa24.21■■□□□ 1.47
CTSA-216ENST00000607212 AFAP1Q8N556 730 aa24.21■■□□□ 1.47
CTSA-216ENST00000607212 CDC42BPBQ9Y5S2 1711 aa24.19■■□□□ 1.46
CTSA-216ENST00000607212 CASKIN1Q8WXD9 1431 aa24.18■■□□□ 1.46
CTSA-216ENST00000607212 ARHGEF12Q9NZN5 1544 aa24.16■■□□□ 1.46
CTSA-216ENST00000607212 PREX2Q70Z35 1606 aa24.16■■□□□ 1.46
CTSA-216ENST00000607212 KDM5CP41229 1560 aa24.15■■□□□ 1.46
CTSA-216ENST00000607212 CEBPAP49715 358 aaPredicted RBP24.13■■□□□ 1.45
CTSA-216ENST00000607212 ESF1Q9H501 851 aaKnown RBP24.13■■□□□ 1.45
CTSA-216ENST00000607212 ZNF777Q9ULD5 760 aaPredicted RBP24.12■■□□□ 1.45
CTSA-216ENST00000607212 DIP2CQ9Y2E4 1556 aa24.12■■□□□ 1.45
CTSA-216ENST00000607212 ITSN2Q9NZM3 1697 aa24.11■■□□□ 1.45
CTSA-216ENST00000607212 PREX1Q8TCU6 1659 aa24.11■■□□□ 1.45
CTSA-216ENST00000607212 FYCO1Q9BQS8 1478 aa24.1■■□□□ 1.45
CTSA-216ENST00000607212 CDC42BPAQ5VT25 1732 aa24.1■■□□□ 1.45
CTSA-216ENST00000607212 ABCC1P33527 1531 aa24.1■■□□□ 1.45
CTSA-216ENST00000607212 ABCA6Q8N139 1617 aa24.09■■□□□ 1.45
CTSA-216ENST00000607212 TRAPPC8Q9Y2L5 1435 aa24.08■■□□□ 1.44
CTSA-216ENST00000607212 MLH3Q9UHC1 1453 aa24.06■■□□□ 1.44
CTSA-216ENST00000607212 REREQ9P2R6 1566 aa24.03■■□□□ 1.44
CTSA-216ENST00000607212 UHRF1BP1Q6BDS2 1440 aa24.02■■□□□ 1.44
CTSA-216ENST00000607212 KIDINS220Q9ULH0 1771 aa23.99■■□□□ 1.43
CTSA-216ENST00000607212 SETD1BQ9UPS6 1966 aaKnown RBP23.99■■□□□ 1.43
CTSA-216ENST00000607212 C3P01024 1663 aa23.99■■□□□ 1.43
CTSA-216ENST00000607212 SAMD9LQ8IVG5 1584 aa23.97■■□□□ 1.43
CTSA-216ENST00000607212 CERKQ8TCT0 537 aa23.97■■□□□ 1.43
CTSA-216ENST00000607212 SYCP2Q9BX26 1530 aa23.97■■□□□ 1.43
CTSA-216ENST00000607212 AGLP35573 1532 aa23.96■■□□□ 1.43
CTSA-216ENST00000607212 SPAG9O60271 1321 aaKnown RBP23.96■■□□□ 1.43
CTSA-216ENST00000607212 MTUS2Q5JR59 1369 aa23.95■■□□□ 1.42
CTSA-216ENST00000607212 CCNB3Q8WWL7 1395 aa23.95■■□□□ 1.42
CTSA-216ENST00000607212 HNRNPMP52272 730 aaKnown RBP eCLIP23.95■■□□□ 1.42
CTSA-216ENST00000607212 CFDP1Q9UEE9 299 aaPredicted RBP23.95■■□□□ 1.42
CTSA-216ENST00000607212 DMRT2Q9Y5R5 561 aa23.94■■□□□ 1.42
CTSA-216ENST00000607212 GPATCH8Q9UKJ3 1502 aaKnown RBP23.94■■□□□ 1.42
CTSA-216ENST00000607212 SUPT6HQ7KZ85 1726 aaKnown RBP23.93■■□□□ 1.42
CTSA-216ENST00000607212 CNTLNQ9NXG0 1405 aa23.9■■□□□ 1.42
CTSA-216ENST00000607212 PLEKHH2Q8IVE3 1493 aa23.89■■□□□ 1.42
CTSA-216ENST00000607212 STRCQ7RTU9 1775 aa23.89■■□□□ 1.42
CTSA-216ENST00000607212 ATP7AQ04656 1500 aa23.87■■□□□ 1.41
CTSA-216ENST00000607212 KIAA1107Q9UPP5 1409 aa23.83■■□□□ 1.4
CTSA-216ENST00000607212 EHBP1L1Q8N3D4 1523 aa23.82■■□□□ 1.4
CTSA-216ENST00000607212 MROH2AA6NES4 1674 aa23.82■■□□□ 1.4
CTSA-216ENST00000607212 CLTCQ00610 1675 aaKnown RBP23.81■■□□□ 1.4
CTSA-216ENST00000607212 GGT6Q6P531 493 aa23.81■■□□□ 1.4
CTSA-216ENST00000607212 INO80Q9ULG1 1556 aaPredicted RBP23.81■■□□□ 1.4
CTSA-216ENST00000607212 A2MP01023 1474 aa23.81■■□□□ 1.4
CTSA-216ENST00000607212 TIAM1Q13009 1591 aa23.79■■□□□ 1.4
CTSA-216ENST00000607212 ZMYM3Q14202 1370 aa23.78■■□□□ 1.4
CTSA-216ENST00000607212 CEP162Q5TB80 1403 aa23.77■■□□□ 1.4
CTSA-216ENST00000607212 ADGBQ8N7X0 1667 aa23.77■■□□□ 1.4
CTSA-216ENST00000607212 ZNF644Q9H582 1327 aaPredicted RBP23.77■■□□□ 1.4
CTSA-216ENST00000607212 PTPRTO14522 1441 aa23.76■■□□□ 1.39
CTSA-216ENST00000607212 NPATQ14207 1427 aa23.75■■□□□ 1.39
CTSA-216ENST00000607212 PLXNC1O60486 1568 aa23.74■■□□□ 1.39
CTSA-216ENST00000607212 CAMSAP1Q5T5Y3 1602 aa23.73■■□□□ 1.39
CTSA-216ENST00000607212 NCOA1Q15788 1441 aa23.72■■□□□ 1.39
CTSA-216ENST00000607212 MYO3AQ8NEV4 1616 aa23.69■■□□□ 1.38
CTSA-216ENST00000607212 NCKAP5LQ9HCH0 1330 aa23.67■■□□□ 1.38
CTSA-216ENST00000607212 NCOA2Q15596 1464 aa23.65■■□□□ 1.38
CTSA-216ENST00000607212 MBD5Q9P267 1494 aa23.65■■□□□ 1.38
CTSA-216ENST00000607212 CAMSAP2Q08AD1 1489 aa23.64■■□□□ 1.38
CTSA-216ENST00000607212 PTPRKQ15262 1439 aa23.64■■□□□ 1.37
CTSA-216ENST00000607212 ZNF142P52746 1687 aaPredicted RBP23.64■■□□□ 1.37
CTSA-216ENST00000607212 CCDC141Q6ZP82 1450 aa23.63■■□□□ 1.37
CTSA-216ENST00000607212 RTEL1-TNFRSF6BF6WH68 1400 aa23.63■■□□□ 1.37
CTSA-216ENST00000607212 PPP6R1Q9UPN7 881 aa23.63■■□□□ 1.37
CTSA-216ENST00000607212 CEP170BQ9Y4F5 1589 aaPredicted RBP23.63■■□□□ 1.37
CTSA-216ENST00000607212 KIF3BO15066 747 aa23.62■■□□□ 1.37
CTSA-216ENST00000607212 DHX29Q7Z478 1369 aaKnown RBP23.61■■□□□ 1.37
CTSA-216ENST00000607212 LTBP4Q8N2S1 1624 aa23.59■■□□□ 1.37
CTSA-216ENST00000607212 PKD2Q13563 968 aa23.59■■□□□ 1.37
CTSA-216ENST00000607212 RSPH4AQ5TD94 716 aa23.58■■□□□ 1.37
CTSA-216ENST00000607212 DISP3Q9P2K9 1392 aa23.57■■□□□ 1.36
CTSA-216ENST00000607212 TSPY4P0CV99 314 aa23.57■■□□□ 1.36
CTSA-216ENST00000607212 TSPY10P0CW01 314 aa23.57■■□□□ 1.36
CTSA-216ENST00000607212 ZNF335Q9H4Z2 1342 aaPredicted RBP23.56■■□□□ 1.36
CTSA-216ENST00000607212 PLA2R1Q13018 1463 aa23.56■■□□□ 1.36
CTSA-216ENST00000607212 WASHC2CQ9Y4E1 1318 aa23.55■■□□□ 1.36
CTSA-216ENST00000607212 LOC105371045A0A1W2PR82 267 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms