RNA–Protein interactions for RNA: ENST00000606499.1

MSH6-211, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 833 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-211ENST00000606499 PHLDB1Q86UU1 1377 aa11.94□□□□□ -0.5
MSH6-211ENST00000606499 CCNB3Q8WWL7 1395 aa11.94□□□□□ -0.5
MSH6-211ENST00000606499 CFAP74Q9C0B2 1584 aa11.94□□□□□ -0.5
MSH6-211ENST00000606499 ARAP3Q8WWN8 1544 aa11.94□□□□□ -0.5
MSH6-211ENST00000606499 MYOM3Q5VTT5 1437 aa11.93□□□□□ -0.5
MSH6-211ENST00000606499 SAMD9LQ8IVG5 1584 aa11.92□□□□□ -0.5
MSH6-211ENST00000606499 PLCH2O75038 1416 aa11.92□□□□□ -0.5
MSH6-211ENST00000606499 FANCAO15360 1455 aa11.91□□□□□ -0.5
MSH6-211ENST00000606499 PTPN23Q9H3S7 1636 aa11.9□□□□□ -0.5
MSH6-211ENST00000606499 TEX14Q8IWB6 1497 aa11.89□□□□□ -0.51
MSH6-211ENST00000606499 FGD6Q6ZV73 1430 aa11.89□□□□□ -0.51
MSH6-211ENST00000606499 ABCC1P33527 1531 aa11.89□□□□□ -0.51
MSH6-211ENST00000606499 CAMSAP2Q08AD1 1489 aa11.89□□□□□ -0.51
MSH6-211ENST00000606499 SYCP2Q9BX26 1530 aa11.87□□□□□ -0.51
MSH6-211ENST00000606499 NEO1Q92859 1461 aa11.87□□□□□ -0.51
MSH6-211ENST00000606499 MIA2Q96PC5 1412 aa11.86□□□□□ -0.51
MSH6-211ENST00000606499 CFDP1Q9UEE9 299 aaPredicted RBP11.86□□□□□ -0.51
MSH6-211ENST00000606499 CROCC2H7BZ55 1655 aa11.85□□□□□ -0.51
MSH6-211ENST00000606499 ADGRL1O94910 1474 aa11.85□□□□□ -0.51
MSH6-211ENST00000606499 TCOF1Q13428 1488 aaKnown RBP11.85□□□□□ -0.51
MSH6-211ENST00000606499 ZNF777Q9ULD5 760 aaPredicted RBP11.85□□□□□ -0.51
MSH6-211ENST00000606499 RICTORQ6R327 1708 aa11.85□□□□□ -0.51
MSH6-211ENST00000606499 AKNAQ7Z591 1439 aa11.85□□□□□ -0.51
MSH6-211ENST00000606499 ZNF644Q9H582 1327 aaPredicted RBP11.85□□□□□ -0.51
MSH6-211ENST00000606499 FRMPD1Q5SYB0 1578 aa11.84□□□□□ -0.51
MSH6-211ENST00000606499 EFCAB2Q5VUJ9 269 aa11.84□□□□□ -0.51
MSH6-211ENST00000606499 ARHGEF12Q9NZN5 1544 aa11.84□□□□□ -0.51
MSH6-211ENST00000606499 KDM6BO15054 1643 aa11.83□□□□□ -0.52
MSH6-211ENST00000606499 RRBP1Q9P2E9 1410 aaKnown RBP11.83□□□□□ -0.52
MSH6-211ENST00000606499 DNMT1P26358 1616 aaKnown RBP11.82□□□□□ -0.52
MSH6-211ENST00000606499 ARHGEF5Q12774 1597 aa11.82□□□□□ -0.52
MSH6-211ENST00000606499 PLEKHH2Q8IVE3 1493 aa11.82□□□□□ -0.52
MSH6-211ENST00000606499 POGZQ7Z3K3 1410 aa11.8□□□□□ -0.52
MSH6-211ENST00000606499 SCAPERQ9BY12 1400 aa11.8□□□□□ -0.52
MSH6-211ENST00000606499 MBD5Q9P267 1494 aa11.8□□□□□ -0.52
MSH6-211ENST00000606499 COL17A1Q9UMD9 1497 aaPredicted RBP11.8□□□□□ -0.52
MSH6-211ENST00000606499 KDM5CP41229 1560 aa11.79□□□□□ -0.52
MSH6-211ENST00000606499 KIAA1107Q9UPP5 1409 aa11.79□□□□□ -0.52
MSH6-211ENST00000606499 TRAPPC8Q9Y2L5 1435 aa11.79□□□□□ -0.52
MSH6-211ENST00000606499 DENND4BO75064 1496 aaPredicted RBP11.79□□□□□ -0.52
MSH6-211ENST00000606499 INO80Q9ULG1 1556 aaPredicted RBP11.79□□□□□ -0.52
MSH6-211ENST00000606499 ADGBQ8N7X0 1667 aa11.78□□□□□ -0.52
MSH6-211ENST00000606499 ZNF518AQ6AHZ1 1483 aa11.78□□□□□ -0.52
MSH6-211ENST00000606499 CCDC141Q6ZP82 1450 aa11.78□□□□□ -0.52
MSH6-211ENST00000606499 HNRNPMP52272 730 aaKnown RBP eCLIP11.78□□□□□ -0.52
MSH6-211ENST00000606499 FAM50AQ14320 339 aaKnown RBP11.78□□□□□ -0.52
MSH6-211ENST00000606499 ZMYM4Q5VZL5 1548 aa11.77□□□□□ -0.52
MSH6-211ENST00000606499 HECW2Q9P2P5 1572 aa11.77□□□□□ -0.53
MSH6-211ENST00000606499 DAPK1P53355 1430 aa11.77□□□□□ -0.53
MSH6-211ENST00000606499 ZFYVE16Q7Z3T8 1539 aa11.76□□□□□ -0.53
MSH6-211ENST00000606499 KIDINS220Q9ULH0 1771 aa11.76□□□□□ -0.53
MSH6-211ENST00000606499 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.76□□□□□ -0.534e-9■■■□□ 16.4
MSH6-211ENST00000606499 MAST1Q9Y2H9 1570 aa11.75□□□□□ -0.53
MSH6-211ENST00000606499 RAPGEF3O95398 923 aa11.75□□□□□ -0.53
MSH6-211ENST00000606499 ABCC5O15440 1437 aa11.75□□□□□ -0.53
MSH6-211ENST00000606499 SHANK2Q9UPX8 1470 aa11.75□□□□□ -0.53
MSH6-211ENST00000606499 ATP7AQ04656 1500 aa11.75□□□□□ -0.53
MSH6-211ENST00000606499 ABCA6Q8N139 1617 aa11.75□□□□□ -0.53
MSH6-211ENST00000606499 PLXNC1O60486 1568 aa11.73□□□□□ -0.53
MSH6-211ENST00000606499 PTPRKQ15262 1439 aa11.73□□□□□ -0.53
MSH6-211ENST00000606499 C9orf84Q5VXU9 1444 aa11.73□□□□□ -0.53
MSH6-211ENST00000606499 AFAP1Q8N556 730 aa11.73□□□□□ -0.53
MSH6-211ENST00000606499 ARHGEF40Q8TER5 1519 aa11.73□□□□□ -0.53
MSH6-211ENST00000606499 DIP2CQ9Y2E4 1556 aa11.72□□□□□ -0.53
MSH6-211ENST00000606499 ITGAEP38570 1179 aa11.72□□□□□ -0.53
MSH6-211ENST00000606499 MLH3Q9UHC1 1453 aa11.71□□□□□ -0.53
MSH6-211ENST00000606499 GCC2Q8IWJ2 1684 aa11.7□□□□□ -0.54
MSH6-211ENST00000606499 ADGRL2O95490 1459 aa11.7□□□□□ -0.54
MSH6-211ENST00000606499 YEATS2Q9ULM3 1422 aa11.69□□□□□ -0.54
MSH6-211ENST00000606499 SIGLEC1Q9BZZ2 1709 aa11.69□□□□□ -0.54
MSH6-211ENST00000606499 SPAG9O60271 1321 aaKnown RBP11.69□□□□□ -0.54
MSH6-211ENST00000606499 MAGI2Q86UL8 1455 aa11.69□□□□□ -0.54
MSH6-211ENST00000606499 CHIC2Q9UKJ5 165 aa11.68□□□□□ -0.54
MSH6-211ENST00000606499 RTEL1-TNFRSF6BF6WH68 1400 aa11.68□□□□□ -0.54
MSH6-211ENST00000606499 RSPH4AQ5TD94 716 aa11.67□□□□□ -0.54
MSH6-211ENST00000606499 TSPY4P0CV99 314 aa11.66□□□□□ -0.54
MSH6-211ENST00000606499 TSPY10P0CW01 314 aa11.66□□□□□ -0.54
MSH6-211ENST00000606499 MYT1LQ9UL68 1186 aa11.66□□□□□ -0.54
MSH6-211ENST00000606499 TRIM26Q12899 539 aaPredicted RBP11.65□□□□□ -0.54
MSH6-211ENST00000606499 NCOA1Q15788 1441 aa11.65□□□□□ -0.54
MSH6-211ENST00000606499 REREQ9P2R6 1566 aa11.65□□□□□ -0.54
MSH6-211ENST00000606499 DUOX2Q9NRD8 1548 aa11.64□□□□□ -0.55
MSH6-211ENST00000606499 ROCK1Q13464 1354 aa11.64□□□□□ -0.55
MSH6-211ENST00000606499 ANKRD30AQ9BXX3 1397 aa11.64□□□□□ -0.55
MSH6-211ENST00000606499 KIF15Q9NS87 1388 aa11.64□□□□□ -0.55
MSH6-211ENST00000606499 EIF2AK4Q9P2K8 1649 aaKnown RBP11.63□□□□□ -0.55
MSH6-211ENST00000606499 ATP10AO60312 1499 aa11.63□□□□□ -0.55
MSH6-211ENST00000606499 A2MP01023 1474 aa11.63□□□□□ -0.55
MSH6-211ENST00000606499 RRP7BPQ9NSQ0 103 aa11.62□□□□□ -0.55
MSH6-211ENST00000606499 BCORL1Q5H9F3 1711 aa11.62□□□□□ -0.55
MSH6-211ENST00000606499 HFM1A2PYH4 1435 aa11.61□□□□□ -0.55
MSH6-211ENST00000606499 NAIPQ13075 1403 aa11.61□□□□□ -0.55
MSH6-211ENST00000606499 DEPDC5O75140 1603 aa11.6□□□□□ -0.55
MSH6-211ENST00000606499 RNF17Q9BXT8 1623 aaKnown RBP11.6□□□□□ -0.55
MSH6-211ENST00000606499 ERBINQ96RT1 1412 aa11.6□□□□□ -0.55
MSH6-211ENST00000606499 MROH1Q8NDA8 1641 aa11.59□□□□□ -0.55
MSH6-211ENST00000606499 UNC13BO14795 1591 aa11.58□□□□□ -0.55
MSH6-211ENST00000606499 DHX29Q7Z478 1369 aaKnown RBP11.58□□□□□ -0.56
MSH6-211ENST00000606499 AGLP35573 1532 aa11.58□□□□□ -0.56
MSH6-211ENST00000606499 ANKRD50Q9ULJ7 1429 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms