RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 MAGI2Q86UL8 1455 aa21.57■■□□□ 1.04
RPS28-204ENST00000602140 TROQ12816 1431 aaPredicted RBP21.56■■□□□ 1.04
RPS28-204ENST00000602140 POGZQ7Z3K3 1410 aa21.56■■□□□ 1.04
RPS28-204ENST00000602140 MYO5CQ9NQX4 1742 aa21.56■■□□□ 1.04
RPS28-204ENST00000602140 LRRIQ1Q96JM4 1722 aa21.54■■□□□ 1.04
RPS28-204ENST00000602140 CLIP1P30622 1438 aa21.54■■□□□ 1.04
RPS28-204ENST00000602140 RIMS1Q86UR5 1692 aaKnown RBP21.52■■□□□ 1.04
RPS28-204ENST00000602140 SIGLEC1Q9BZZ2 1709 aa21.52■■□□□ 1.03
RPS28-204ENST00000602140 ARHGAP5Q13017 1502 aa21.5■■□□□ 1.03
RPS28-204ENST00000602140 CASKIN1Q8WXD9 1431 aa21.49■■□□□ 1.03
RPS28-204ENST00000602140 MLECQ14165 292 aa21.49■■□□□ 1.03
RPS28-204ENST00000602140 PCF11O94913 1555 aaKnown RBP21.48■■□□□ 1.03
RPS28-204ENST00000602140 PLPPR3Q6T4P5 718 aa21.47■■□□□ 1.03
RPS28-204ENST00000602140 ATP10AO60312 1499 aa21.46■■□□□ 1.03
RPS28-204ENST00000602140 CCDC18Q5T9S5 1454 aa21.46■■□□□ 1.03
RPS28-204ENST00000602140 LMTK3Q96Q04 1460 aa21.45■■□□□ 1.03
RPS28-204ENST00000602140 AFAP1Q8N556 730 aa21.45■■□□□ 1.02
RPS28-204ENST00000602140 ZNF518AQ6AHZ1 1483 aa21.45■■□□□ 1.02
RPS28-204ENST00000602140 C9orf84Q5VXU9 1444 aa21.44■■□□□ 1.02
RPS28-204ENST00000602140 CDC42BPBQ9Y5S2 1711 aa21.41■■□□□ 1.02
RPS28-204ENST00000602140 FYCO1Q9BQS8 1478 aa21.4■■□□□ 1.02
RPS28-204ENST00000602140 MYT1LQ9UL68 1186 aa21.4■■□□□ 1.02
RPS28-204ENST00000602140 KDM5CP41229 1560 aa21.4■■□□□ 1.02
RPS28-204ENST00000602140 FER1L4A9Z1Z3 1794 aa21.39■■□□□ 1.01
RPS28-204ENST00000602140 PREX2Q70Z35 1606 aa21.38■■□□□ 1.01
RPS28-204ENST00000602140 ARHGEF12Q9NZN5 1544 aa21.38■■□□□ 1.01
RPS28-204ENST00000602140 HSPA2P54652 639 aa21.36■■□□□ 1.01
RPS28-204ENST00000602140 ABCC1P33527 1531 aa21.34■■□□□ 1.01
RPS28-204ENST00000602140 TRAPPC8Q9Y2L5 1435 aa21.34■■□□□ 1.01
RPS28-204ENST00000602140 MLH3Q9UHC1 1453 aa21.33■■□□□ 1.01
RPS28-204ENST00000602140 DIP2CQ9Y2E4 1556 aa21.33■■□□□ 1.01
RPS28-204ENST00000602140 CDC42BPAQ5VT25 1732 aa21.32■■□□□ 1
RPS28-204ENST00000602140 ABCA6Q8N139 1617 aa21.3■■□□□ 1
RPS28-204ENST00000602140 CEBPAP49715 358 aaPredicted RBP21.3■■□□□ 1
RPS28-204ENST00000602140 ITSN2Q9NZM3 1697 aa21.3■■□□□ 1
RPS28-204ENST00000602140 REREQ9P2R6 1566 aa21.29■■□□□ 1
RPS28-204ENST00000602140 ZNF777Q9ULD5 760 aaPredicted RBP21.29■■□□□ 1
RPS28-204ENST00000602140 FBXO41Q8TF61 875 aa21.28■■□□□ 1
RPS28-204ENST00000602140 GPATCH8Q9UKJ3 1502 aaKnown RBP21.26■□□□□ 0.99
RPS28-204ENST00000602140 SAMD9LQ8IVG5 1584 aa21.24■□□□□ 0.99
RPS28-204ENST00000602140 KIDINS220Q9ULH0 1771 aa21.23■□□□□ 0.99
RPS28-204ENST00000602140 AGLP35573 1532 aa21.23■□□□□ 0.99
RPS28-204ENST00000602140 PREX1Q8TCU6 1659 aa21.22■□□□□ 0.99
RPS28-204ENST00000602140 HNRNPMP52272 730 aaKnown RBP eCLIP21.22■□□□□ 0.99
RPS28-204ENST00000602140 SYCP2Q9BX26 1530 aa21.22■□□□□ 0.99
RPS28-204ENST00000602140 MTUS2Q5JR59 1369 aa21.22■□□□□ 0.99
RPS28-204ENST00000602140 CFDP1Q9UEE9 299 aaPredicted RBP21.21■□□□□ 0.99
RPS28-204ENST00000602140 ESF1Q9H501 851 aaKnown RBP21.2■□□□□ 0.98
RPS28-204ENST00000602140 CCNB3Q8WWL7 1395 aa21.2■□□□□ 0.98
RPS28-204ENST00000602140 SPAG9O60271 1321 aaKnown RBP21.19■□□□□ 0.98
RPS28-204ENST00000602140 UHRF1BP1Q6BDS2 1440 aa21.17■□□□□ 0.98
RPS28-204ENST00000602140 KIAA1107Q9UPP5 1409 aa21.16■□□□□ 0.98
RPS28-204ENST00000602140 C3P01024 1663 aa21.15■□□□□ 0.98
RPS28-204ENST00000602140 PLEKHH2Q8IVE3 1493 aa21.15■□□□□ 0.98
RPS28-204ENST00000602140 CEP162Q5TB80 1403 aa21.15■□□□□ 0.98
RPS28-204ENST00000602140 ATP7AQ04656 1500 aa21.12■□□□□ 0.97
RPS28-204ENST00000602140 SETD1BQ9UPS6 1966 aaKnown RBP21.12■□□□□ 0.97
RPS28-204ENST00000602140 CNTLNQ9NXG0 1405 aa21.12■□□□□ 0.97
RPS28-204ENST00000602140 EHBP1L1Q8N3D4 1523 aa21.11■□□□□ 0.97
RPS28-204ENST00000602140 TIAM1Q13009 1591 aa21.1■□□□□ 0.97
RPS28-204ENST00000602140 ZNF644Q9H582 1327 aaPredicted RBP21.1■□□□□ 0.97
RPS28-204ENST00000602140 INO80Q9ULG1 1556 aaPredicted RBP21.1■□□□□ 0.97
RPS28-204ENST00000602140 CERKQ8TCT0 537 aa21.09■□□□□ 0.97
RPS28-204ENST00000602140 SUPT6HQ7KZ85 1726 aaKnown RBP21.09■□□□□ 0.97
RPS28-204ENST00000602140 STRCQ7RTU9 1775 aa21.08■□□□□ 0.96
RPS28-204ENST00000602140 A2MP01023 1474 aa21.07■□□□□ 0.96
RPS28-204ENST00000602140 DMRT2Q9Y5R5 561 aa21.07■□□□□ 0.96
RPS28-204ENST00000602140 PLXNC1O60486 1568 aa21.06■□□□□ 0.96
RPS28-204ENST00000602140 ZMYM3Q14202 1370 aa21.05■□□□□ 0.96
RPS28-204ENST00000602140 MBD5Q9P267 1494 aa21.04■□□□□ 0.96
RPS28-204ENST00000602140 MROH2AA6NES4 1674 aa21.03■□□□□ 0.96
RPS28-204ENST00000602140 GGT6Q6P531 493 aa21.02■□□□□ 0.96
RPS28-204ENST00000602140 NPATQ14207 1427 aa21.02■□□□□ 0.96
RPS28-204ENST00000602140 NCOA2Q15596 1464 aa21■□□□□ 0.95
RPS28-204ENST00000602140 CLTCQ00610 1675 aaKnown RBP20.99■□□□□ 0.95
RPS28-204ENST00000602140 ADGBQ8N7X0 1667 aa20.99■□□□□ 0.95
RPS28-204ENST00000602140 LOC105371045A0A1W2PR82 267 aa20.99■□□□□ 0.95
RPS28-204ENST00000602140 RTEL1-TNFRSF6BF6WH68 1400 aa20.98■□□□□ 0.95
RPS28-204ENST00000602140 PTPRTO14522 1441 aa20.98■□□□□ 0.95
RPS28-204ENST00000602140 NCOA1Q15788 1441 aa20.95■□□□□ 0.95
RPS28-204ENST00000602140 PPP6R1Q9UPN7 881 aa20.95■□□□□ 0.94
RPS28-204ENST00000602140 CAMSAP2Q08AD1 1489 aa20.94■□□□□ 0.94
RPS28-204ENST00000602140 DHX29Q7Z478 1369 aaKnown RBP20.94■□□□□ 0.94
RPS28-204ENST00000602140 CCDC141Q6ZP82 1450 aa20.94■□□□□ 0.94
RPS28-204ENST00000602140 PTPRKQ15262 1439 aa20.93■□□□□ 0.94
RPS28-204ENST00000602140 VPS8Q8N3P4 1428 aa20.93■□□□□ 0.94
RPS28-204ENST00000602140 CAMSAP1Q5T5Y3 1602 aa20.93■□□□□ 0.94
RPS28-204ENST00000602140 RSPH4AQ5TD94 716 aa20.92■□□□□ 0.94
RPS28-204ENST00000602140 MYO3AQ8NEV4 1616 aa20.89■□□□□ 0.94
RPS28-204ENST00000602140 LRRC9Q6ZRR7 1453 aa20.89■□□□□ 0.94
RPS28-204ENST00000602140 KIF3BO15066 747 aa20.89■□□□□ 0.93
RPS28-204ENST00000602140 NCKAP5LQ9HCH0 1330 aa20.87■□□□□ 0.93
RPS28-204ENST00000602140 ZNF142P52746 1687 aaPredicted RBP20.86■□□□□ 0.93
RPS28-204ENST00000602140 CEP170BQ9Y4F5 1589 aaPredicted RBP20.86■□□□□ 0.93
RPS28-204ENST00000602140 ARHGEF5Q12774 1597 aa20.85■□□□□ 0.93
RPS28-204ENST00000602140 TSPY4P0CV99 314 aa20.85■□□□□ 0.93
RPS28-204ENST00000602140 TSPY10P0CW01 314 aa20.85■□□□□ 0.93
RPS28-204ENST00000602140 LTBP4Q8N2S1 1624 aa20.85■□□□□ 0.93
RPS28-204ENST00000602140 KANK4Q5T7N3 995 aaPredicted RBP20.84■□□□□ 0.93
RPS28-204ENST00000602140 PLA2R1Q13018 1463 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms