RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 CDC42BPBQ9Y5S2 1711 aa26.88■■□□□ 1.89
VRK3-225ENST00000601912 PLCH2O75038 1416 aa26.88■■□□□ 1.89
VRK3-225ENST00000601912 ARHGAP5Q13017 1502 aa26.87■■□□□ 1.89
VRK3-225ENST00000601912 PTPRKQ15262 1439 aa26.87■■□□□ 1.89
VRK3-225ENST00000601912 DAPK1P53355 1430 aa26.85■■□□□ 1.89
VRK3-225ENST00000601912 DNMT1P26358 1616 aaKnown RBP26.85■■□□□ 1.89
VRK3-225ENST00000601912 SETD5Q9C0A6 1442 aa26.84■■□□□ 1.89
VRK3-225ENST00000601912 MAPKBP1O60336 1514 aa26.84■■□□□ 1.89
VRK3-225ENST00000601912 ABCA9Q8IUA7 1624 aa26.83■■□□□ 1.89
VRK3-225ENST00000601912 CCER1Q8TC90 406 aaPredicted RBP26.82■■□□□ 1.88
VRK3-225ENST00000601912 ABCC5O15440 1437 aa26.82■■□□□ 1.88
VRK3-225ENST00000601912 EFCAB2Q5VUJ9 269 aa26.82■■□□□ 1.88
VRK3-225ENST00000601912 ARAP3Q8WWN8 1544 aa26.81■■□□□ 1.88
VRK3-225ENST00000601912 CHIC2Q9UKJ5 165 aa26.79■■□□□ 1.88
VRK3-225ENST00000601912 SAMD9LQ8IVG5 1584 aa26.78■■□□□ 1.88
VRK3-225ENST00000601912 PLEKHH2Q8IVE3 1493 aa26.78■■□□□ 1.88
VRK3-225ENST00000601912 RSPH4AQ5TD94 716 aa26.78■■□□□ 1.88
VRK3-225ENST00000601912 HFM1A2PYH4 1435 aa26.77■■□□□ 1.88
VRK3-225ENST00000601912 RAB3GAP2Q9H2M9 1393 aa26.77■■□□□ 1.88
VRK3-225ENST00000601912 HRCP23327 699 aa26.76■■□□□ 1.87
VRK3-225ENST00000601912 AKNAQ7Z591 1439 aa26.75■■□□□ 1.87
VRK3-225ENST00000601912 ROCK1Q13464 1354 aa26.74■■□□□ 1.87
VRK3-225ENST00000601912 HNRNPMP52272 730 aaKnown RBP eCLIP26.74■■□□□ 1.87
VRK3-225ENST00000601912 KIAA1107Q9UPP5 1409 aa26.74■■□□□ 1.87
VRK3-225ENST00000601912 ARHGEF5Q12774 1597 aa26.73■■□□□ 1.87
VRK3-225ENST00000601912 TSPY4P0CV99 314 aa26.72■■□□□ 1.87
VRK3-225ENST00000601912 TSPY10P0CW01 314 aa26.72■■□□□ 1.87
VRK3-225ENST00000601912 MBD5Q9P267 1494 aa26.71■■□□□ 1.87
VRK3-225ENST00000601912 NAIPQ13075 1403 aa26.71■■□□□ 1.87
VRK3-225ENST00000601912 RRP7BPQ9NSQ0 103 aa26.71■■□□□ 1.87
VRK3-225ENST00000601912 CROCC2H7BZ55 1655 aa26.69■■□□□ 1.86
VRK3-225ENST00000601912 CD109Q6YHK3 1445 aa26.69■■□□□ 1.86
VRK3-225ENST00000601912 FANCAO15360 1455 aa26.69■■□□□ 1.86
VRK3-225ENST00000601912 CCDC141Q6ZP82 1450 aa26.69■■□□□ 1.86
VRK3-225ENST00000601912 SHANK2Q9UPX8 1470 aa26.69■■□□□ 1.86
VRK3-225ENST00000601912 ZEB1P37275 1124 aaPredicted RBP26.69■■□□□ 1.86
VRK3-225ENST00000601912 SYCP2Q9BX26 1530 aa26.68■■□□□ 1.86
VRK3-225ENST00000601912 ANKRD30AQ9BXX3 1397 aa26.65■■□□□ 1.86
VRK3-225ENST00000601912 C9orf84Q5VXU9 1444 aa26.64■■□□□ 1.86
VRK3-225ENST00000601912 ADGRL2O95490 1459 aa26.64■■□□□ 1.86
VRK3-225ENST00000601912 GCC2Q8IWJ2 1684 aa26.64■■□□□ 1.86
VRK3-225ENST00000601912 ADGBQ8N7X0 1667 aa26.64■■□□□ 1.86
VRK3-225ENST00000601912 ABCC1P33527 1531 aa26.64■■□□□ 1.86
VRK3-225ENST00000601912 NCOA1Q15788 1441 aa26.63■■□□□ 1.85
VRK3-225ENST00000601912 GLI2P10070 1586 aa26.63■■□□□ 1.85
VRK3-225ENST00000601912 DHX57Q6P158 1386 aaKnown RBP26.6■■□□□ 1.85
VRK3-225ENST00000601912 ARHGEF12Q9NZN5 1544 aa26.6■■□□□ 1.85
VRK3-225ENST00000601912 ACIN1Q9UKV3 1341 aaKnown RBP26.59■■□□□ 1.85
VRK3-225ENST00000601912 CFAP74Q9C0B2 1584 aa26.58■■□□□ 1.85
VRK3-225ENST00000601912 FAM69CQ0P6D2 419 aa26.58■■□□□ 1.85
VRK3-225ENST00000601912 ADGRL1O94910 1474 aa26.57■■□□□ 1.84
VRK3-225ENST00000601912 MAP3K4Q9Y6R4 1608 aa26.55■■□□□ 1.84
VRK3-225ENST00000601912 DIP2BQ9P265 1576 aa26.55■■□□□ 1.84
VRK3-225ENST00000601912 MAST1Q9Y2H9 1570 aa26.55■■□□□ 1.84
VRK3-225ENST00000601912 CLSPNQ9HAW4 1339 aa26.54■■□□□ 1.84
VRK3-225ENST00000601912 SCAPERQ9BY12 1400 aa26.53■■□□□ 1.84
VRK3-225ENST00000601912 TRAPPC8Q9Y2L5 1435 aa26.53■■□□□ 1.84
VRK3-225ENST00000601912 DNAJC5Q9H3Z4 198 aa26.51■■□□□ 1.83
VRK3-225ENST00000601912 NEO1Q92859 1461 aa26.51■■□□□ 1.83
VRK3-225ENST00000601912 KIF15Q9NS87 1388 aa26.5■■□□□ 1.83
VRK3-225ENST00000601912 AFAP1Q8N556 730 aa26.48■■□□□ 1.83
VRK3-225ENST00000601912 SPAG9O60271 1321 aaKnown RBP26.48■■□□□ 1.83
VRK3-225ENST00000601912 ANKRD50Q9ULJ7 1429 aa26.47■■□□□ 1.83
VRK3-225ENST00000601912 KDM6BO15054 1643 aa26.47■■□□□ 1.83
VRK3-225ENST00000601912 TRIM52Q96A61 297 aa26.47■■□□□ 1.83
VRK3-225ENST00000601912 RTEL1-TNFRSF6BF6WH68 1400 aa26.45■■□□□ 1.83
VRK3-225ENST00000601912 PLXNC1O60486 1568 aa26.44■■□□□ 1.82
VRK3-225ENST00000601912 ZNF518AQ6AHZ1 1483 aa26.42■■□□□ 1.82
VRK3-225ENST00000601912 TEX14Q8IWB6 1497 aa26.39■■□□□ 1.82
VRK3-225ENST00000601912 POGZQ7Z3K3 1410 aa26.38■■□□□ 1.81
VRK3-225ENST00000601912 MYT1LQ9UL68 1186 aa26.38■■□□□ 1.81
VRK3-225ENST00000601912 ZFYVE16Q7Z3T8 1539 aa26.37■■□□□ 1.81
VRK3-225ENST00000601912 DUOX2Q9NRD8 1548 aa26.37■■□□□ 1.81
VRK3-225ENST00000601912 DENND4BO75064 1496 aaPredicted RBP26.37■■□□□ 1.81
VRK3-225ENST00000601912 KIF13AQ9H1H9 1805 aa26.36■■□□□ 1.81
VRK3-225ENST00000601912 ATP7AQ04656 1500 aa26.36■■□□□ 1.81
VRK3-225ENST00000601912 INO80Q9ULG1 1556 aaPredicted RBP26.35■■□□□ 1.81
VRK3-225ENST00000601912 TSPOAP1O95153 1857 aa26.35■■□□□ 1.81
VRK3-225ENST00000601912 MPHOSPH9Q99550 1183 aa26.32■■□□□ 1.8
VRK3-225ENST00000601912 KDM5CP41229 1560 aa26.32■■□□□ 1.8
VRK3-225ENST00000601912 ERBINQ96RT1 1412 aa26.32■■□□□ 1.8
VRK3-225ENST00000601912 PPRC1Q5VV67 1664 aaKnown RBP26.31■■□□□ 1.8
VRK3-225ENST00000601912 MLH3Q9UHC1 1453 aa26.29■■□□□ 1.8
VRK3-225ENST00000601912 RAPGEF3O95398 923 aa26.28■■□□□ 1.8
VRK3-225ENST00000601912 SLC4A1APQ9BWU0 796 aaKnown RBP26.28■■□□□ 1.8
VRK3-225ENST00000601912 NUP155O75694 1391 aa26.26■■□□□ 1.79
VRK3-225ENST00000601912 KIDINS220Q9ULH0 1771 aa26.26■■□□□ 1.79
VRK3-225ENST00000601912 HECW2Q9P2P5 1572 aa26.25■■□□□ 1.79
VRK3-225ENST00000601912 RICTORQ6R327 1708 aa26.23■■□□□ 1.79
VRK3-225ENST00000601912 DHX29Q7Z478 1369 aaKnown RBP26.22■■□□□ 1.79
VRK3-225ENST00000601912 PZPP20742 1482 aa26.22■■□□□ 1.79
VRK3-225ENST00000601912 KDM5DQ9BY66 1539 aa26.22■■□□□ 1.79
VRK3-225ENST00000601912 UNC13BO14795 1591 aa26.19■■□□□ 1.78
VRK3-225ENST00000601912 TRHP20396 242 aaPredicted RBP26.16■■□□□ 1.78
VRK3-225ENST00000601912 SIN3AQ96ST3 1273 aa26.16■■□□□ 1.78
VRK3-225ENST00000601912 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.16■■□□□ 1.78
VRK3-225ENST00000601912 A2MP01023 1474 aa26.16■■□□□ 1.78
VRK3-225ENST00000601912 NEUROD1Q13562 356 aa26.15■■□□□ 1.78
VRK3-225ENST00000601912 FRMPD1Q5SYB0 1578 aa26.15■■□□□ 1.78
VRK3-225ENST00000601912 PKD2Q13563 968 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms