RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 CFDP1Q9UEE9 299 aaPredicted RBP25.79■■□□□ 1.72
USHBP1-210ENST00000600286 NCOA2Q15596 1464 aa25.78■■□□□ 1.72
USHBP1-210ENST00000600286 TTC37Q6PGP7 1564 aa25.78■■□□□ 1.72
USHBP1-210ENST00000600286 PPARGC1BQ86YN6 1023 aaKnown RBP25.75■■□□□ 1.71
USHBP1-210ENST00000600286 ZNF777Q9ULD5 760 aaPredicted RBP25.74■■□□□ 1.71
USHBP1-210ENST00000600286 RICTORQ6R327 1708 aa25.73■■□□□ 1.71
USHBP1-210ENST00000600286 ARHGAP5Q13017 1502 aa25.73■■□□□ 1.71
USHBP1-210ENST00000600286 GPATCH8Q9UKJ3 1502 aaKnown RBP25.73■■□□□ 1.71
USHBP1-210ENST00000600286 FANCAO15360 1455 aa25.72■■□□□ 1.71
USHBP1-210ENST00000600286 MYO5CQ9NQX4 1742 aa25.71■■□□□ 1.71
USHBP1-210ENST00000600286 AKNAQ7Z591 1439 aa25.68■■□□□ 1.7
USHBP1-210ENST00000600286 CFAP74Q9C0B2 1584 aa25.68■■□□□ 1.7
USHBP1-210ENST00000600286 RAPGEF3O95398 923 aa25.66■■□□□ 1.7
USHBP1-210ENST00000600286 ADAMTSL3P82987 1691 aa25.64■■□□□ 1.7
USHBP1-210ENST00000600286 MYOM3Q5VTT5 1437 aa25.64■■□□□ 1.7
USHBP1-210ENST00000600286 PREX2Q70Z35 1606 aa25.63■■□□□ 1.69
USHBP1-210ENST00000600286 ITSN2Q9NZM3 1697 aa25.63■■□□□ 1.69
USHBP1-210ENST00000600286 MIA2Q96PC5 1412 aa25.62■■□□□ 1.69
USHBP1-210ENST00000600286 PLEKHH2Q8IVE3 1493 aa25.6■■□□□ 1.69
USHBP1-210ENST00000600286 CDC42BPAQ5VT25 1732 aa25.6■■□□□ 1.69
USHBP1-210ENST00000600286 ZMYM4Q5VZL5 1548 aa25.6■■□□□ 1.69
USHBP1-210ENST00000600286 SCAPERQ9BY12 1400 aa25.6■■□□□ 1.69
USHBP1-210ENST00000600286 ARHGEF40Q8TER5 1519 aa25.59■■□□□ 1.69
USHBP1-210ENST00000600286 DENND4BO75064 1496 aaPredicted RBP25.59■■□□□ 1.69
USHBP1-210ENST00000600286 BCORL1Q5H9F3 1711 aa25.58■■□□□ 1.69
USHBP1-210ENST00000600286 CDC42BPBQ9Y5S2 1711 aa25.58■■□□□ 1.69
USHBP1-210ENST00000600286 RSPH4AQ5TD94 716 aa25.57■■□□□ 1.68
USHBP1-210ENST00000600286 HECW2Q9P2P5 1572 aa25.56■■□□□ 1.68
USHBP1-210ENST00000600286 SIGLEC1Q9BZZ2 1709 aa25.55■■□□□ 1.68
USHBP1-210ENST00000600286 HNRNPMP52272 730 aaKnown RBP eCLIP25.55■■□□□ 1.68
USHBP1-210ENST00000600286 MYT1LQ9UL68 1186 aa25.54■■□□□ 1.68
USHBP1-210ENST00000600286 ZNF644Q9H582 1327 aaPredicted RBP25.54■■□□□ 1.68
USHBP1-210ENST00000600286 KIAA1107Q9UPP5 1409 aa25.54■■□□□ 1.68
USHBP1-210ENST00000600286 FGD6Q6ZV73 1430 aa25.53■■□□□ 1.68
USHBP1-210ENST00000600286 FAM50AQ14320 339 aaKnown RBP25.51■■□□□ 1.67
USHBP1-210ENST00000600286 AFAP1Q8N556 730 aa25.49■■□□□ 1.67
USHBP1-210ENST00000600286 CAMSAP2Q08AD1 1489 aa25.48■■□□□ 1.67
USHBP1-210ENST00000600286 TSPY4P0CV99 314 aa25.48■■□□□ 1.67
USHBP1-210ENST00000600286 TSPY10P0CW01 314 aa25.48■■□□□ 1.67
USHBP1-210ENST00000600286 SAMD9LQ8IVG5 1584 aa25.47■■□□□ 1.67
USHBP1-210ENST00000600286 ABCC1P33527 1531 aa25.47■■□□□ 1.67
USHBP1-210ENST00000600286 ZNF518AQ6AHZ1 1483 aa25.47■■□□□ 1.67
USHBP1-210ENST00000600286 MAGI2Q86UL8 1455 aa25.47■■□□□ 1.67
USHBP1-210ENST00000600286 POGZQ7Z3K3 1410 aa25.46■■□□□ 1.67
USHBP1-210ENST00000600286 MADDQ8WXG6 1647 aa25.46■■□□□ 1.67
USHBP1-210ENST00000600286 PTPRMP28827 1452 aa25.46■■□□□ 1.67
USHBP1-210ENST00000600286 YEATS2Q9ULM3 1422 aa25.45■■□□□ 1.66
USHBP1-210ENST00000600286 ZFYVE16Q7Z3T8 1539 aa25.44■■□□□ 1.66
USHBP1-210ENST00000600286 SYCP2Q9BX26 1530 aa25.43■■□□□ 1.66
USHBP1-210ENST00000600286 SPAG9O60271 1321 aaKnown RBP25.43■■□□□ 1.66
USHBP1-210ENST00000600286 PTPN23Q9H3S7 1636 aa25.42■■□□□ 1.66
USHBP1-210ENST00000600286 TRAPPC8Q9Y2L5 1435 aa25.42■■□□□ 1.66
USHBP1-210ENST00000600286 ARHGEF12Q9NZN5 1544 aa25.41■■□□□ 1.66
USHBP1-210ENST00000600286 TCOF1Q13428 1488 aaKnown RBP25.4■■□□□ 1.66
USHBP1-210ENST00000600286 KDM5CP41229 1560 aa25.39■■□□□ 1.66
USHBP1-210ENST00000600286 MBD5Q9P267 1494 aa25.39■■□□□ 1.65
USHBP1-210ENST00000600286 CCDC141Q6ZP82 1450 aa25.38■■□□□ 1.65
USHBP1-210ENST00000600286 RIMS1Q86UR5 1692 aaKnown RBP25.36■■□□□ 1.65
USHBP1-210ENST00000600286 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.36■■□□□ 1.65
USHBP1-210ENST00000600286 RRBP1Q9P2E9 1410 aaKnown RBP25.34■■□□□ 1.65
USHBP1-210ENST00000600286 ARHGEF5Q12774 1597 aa25.34■■□□□ 1.65
USHBP1-210ENST00000600286 MLH3Q9UHC1 1453 aa25.32■■□□□ 1.64
USHBP1-210ENST00000600286 ITGAEP38570 1179 aa25.31■■□□□ 1.64
USHBP1-210ENST00000600286 RTEL1-TNFRSF6BF6WH68 1400 aa25.29■■□□□ 1.64
USHBP1-210ENST00000600286 ATP10AO60312 1499 aa25.29■■□□□ 1.64
USHBP1-210ENST00000600286 DAPK1P53355 1430 aa25.29■■□□□ 1.64
USHBP1-210ENST00000600286 ARID4BQ4LE39 1312 aaPredicted RBP25.28■■□□□ 1.64
USHBP1-210ENST00000600286 FER1L4A9Z1Z3 1794 aa25.28■■□□□ 1.64
USHBP1-210ENST00000600286 ABCC5O15440 1437 aa25.28■■□□□ 1.64
USHBP1-210ENST00000600286 CHIC2Q9UKJ5 165 aa25.26■■□□□ 1.63
USHBP1-210ENST00000600286 C9orf84Q5VXU9 1444 aa25.26■■□□□ 1.63
USHBP1-210ENST00000600286 REREQ9P2R6 1566 aa25.26■■□□□ 1.63
USHBP1-210ENST00000600286 DIP2CQ9Y2E4 1556 aa25.26■■□□□ 1.63
USHBP1-210ENST00000600286 ABCA6Q8N139 1617 aa25.24■■□□□ 1.63
USHBP1-210ENST00000600286 LMTK3Q96Q04 1460 aa25.24■■□□□ 1.63
USHBP1-210ENST00000600286 DNMT1P26358 1616 aaKnown RBP25.23■■□□□ 1.63
USHBP1-210ENST00000600286 ATP7AQ04656 1500 aa25.22■■□□□ 1.63
USHBP1-210ENST00000600286 ANKRD30AQ9BXX3 1397 aa25.22■■□□□ 1.63
USHBP1-210ENST00000600286 SHANK2Q9UPX8 1470 aa25.21■■□□□ 1.63
USHBP1-210ENST00000600286 KIDINS220Q9ULH0 1771 aa25.21■■□□□ 1.63
USHBP1-210ENST00000600286 RRP7BPQ9NSQ0 103 aa25.18■■□□□ 1.62
USHBP1-210ENST00000600286 MAST1Q9Y2H9 1570 aa25.17■■□□□ 1.62
USHBP1-210ENST00000600286 INO80Q9ULG1 1556 aaPredicted RBP25.15■■□□□ 1.62
USHBP1-210ENST00000600286 AGLP35573 1532 aa25.14■■□□□ 1.62
USHBP1-210ENST00000600286 DHX29Q7Z478 1369 aaKnown RBP25.14■■□□□ 1.61
USHBP1-210ENST00000600286 KIF15Q9NS87 1388 aa25.13■■□□□ 1.61
USHBP1-210ENST00000600286 A2MP01023 1474 aa25.13■■□□□ 1.61
USHBP1-210ENST00000600286 ROCK1Q13464 1354 aa25.12■■□□□ 1.61
USHBP1-210ENST00000600286 NCOA1Q15788 1441 aa25.12■■□□□ 1.61
USHBP1-210ENST00000600286 CROCC2H7BZ55 1655 aa25.1■■□□□ 1.61
USHBP1-210ENST00000600286 PTPRKQ15262 1439 aa25.09■■□□□ 1.61
USHBP1-210ENST00000600286 ADGRL2O95490 1459 aa25.09■■□□□ 1.61
USHBP1-210ENST00000600286 TRIM26Q12899 539 aaPredicted RBP25.07■■□□□ 1.6
USHBP1-210ENST00000600286 MLECQ14165 292 aa25.07■■□□□ 1.6
USHBP1-210ENST00000600286 ILDR1Q86SU0 546 aaPredicted RBP25.07■■□□□ 1.6
USHBP1-210ENST00000600286 PLXNC1O60486 1568 aa25.06■■□□□ 1.6
USHBP1-210ENST00000600286 KIF3BO15066 747 aa25.06■■□□□ 1.6
USHBP1-210ENST00000600286 ESF1Q9H501 851 aaKnown RBP25.06■■□□□ 1.6
USHBP1-210ENST00000600286 ADGBQ8N7X0 1667 aa25.06■■□□□ 1.6
USHBP1-210ENST00000600286 DUOX2Q9NRD8 1548 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms