RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	FANCA	O15360	1455 aa		34.25	■■■■□ 3.07
LTBP4-227	ENST00000600026	NEO1	Q92859	1461 aa		34.25	■■■■□ 3.07
LTBP4-227	ENST00000600026	ARHGAP5	Q13017	1502 aa		34.25	■■■■□ 3.07
LTBP4-227	ENST00000600026	GPATCH8	Q9UKJ3	1502 aa	Known RBP	34.24	■■■■□ 3.07
LTBP4-227	ENST00000600026	KDM6B	O15054	1643 aa		34.23	■■■■□ 3.07
LTBP4-227	ENST00000600026	CCNB3	Q8WWL7	1395 aa		34.23	■■■■□ 3.07
LTBP4-227	ENST00000600026	AKNA	Q7Z591	1439 aa		34.15	■■■■□ 3.06
LTBP4-227	ENST00000600026	PHLDB1	Q86UU1	1377 aa		34.15	■■■■□ 3.06
LTBP4-227	ENST00000600026	COL17A1	Q9UMD9	1497 aa	Predicted RBP	34.13	■■■■□ 3.05
LTBP4-227	ENST00000600026	EFCAB2	Q5VUJ9	269 aa		34.12	■■■■□ 3.05
LTBP4-227	ENST00000600026	SAMD9L	Q8IVG5	1584 aa		34.1	■■■■□ 3.05
LTBP4-227	ENST00000600026	ADGRL1	O94910	1474 aa		34.09	■■■■□ 3.05
LTBP4-227	ENST00000600026	ABCC1	P33527	1531 aa		34.07	■■■■□ 3.04
LTBP4-227	ENST00000600026	CFDP1	Q9UEE9	299 aa	Predicted RBP	34.05	■■■■□ 3.04
LTBP4-227	ENST00000600026	MYOM3	Q5VTT5	1437 aa		34.04	■■■■□ 3.04
LTBP4-227	ENST00000600026	RICTOR	Q6R327	1708 aa		34.04	■■■■□ 3.04
LTBP4-227	ENST00000600026	FRMPD1	Q5SYB0	1578 aa		34.03	■■■■□ 3.04
LTBP4-227	ENST00000600026	ILDR1	Q86SU0	546 aa	Predicted RBP	34.02	■■■■□ 3.04
LTBP4-227	ENST00000600026	DENND4B	O75064	1496 aa	Predicted RBP	34.01	■■■■□ 3.03
LTBP4-227	ENST00000600026	PPARGC1B	Q86YN6	1023 aa	Known RBP	34	■■■■□ 3.03
LTBP4-227	ENST00000600026	SCAPER	Q9BY12	1400 aa		34	■■■■□ 3.03
LTBP4-227	ENST00000600026	ZNF777	Q9ULD5	760 aa	Predicted RBP	34	■■■■□ 3.03
LTBP4-227	ENST00000600026	SYCP2	Q9BX26	1530 aa		33.97	■■■■□ 3.03
LTBP4-227	ENST00000600026	ARHGEF12	Q9NZN5	1544 aa		33.96	■■■■□ 3.03
LTBP4-227	ENST00000600026	POGZ	Q7Z3K3	1410 aa		33.96	■■■■□ 3.03
LTBP4-227	ENST00000600026	MIA2	Q96PC5	1412 aa		33.96	■■■■□ 3.03
LTBP4-227	ENST00000600026	CAMSAP2	Q08AD1	1489 aa		33.95	■■■■□ 3.03
LTBP4-227	ENST00000600026	PLEKHH2	Q8IVE3	1493 aa		33.95	■■■■□ 3.03
LTBP4-227	ENST00000600026	ZNF644	Q9H582	1327 aa	Predicted RBP	33.91	■■■■□ 3.02
LTBP4-227	ENST00000600026	RAPGEF3	O95398	923 aa		33.91	■■■■□ 3.02
LTBP4-227	ENST00000600026	PTPN23	Q9H3S7	1636 aa		33.9	■■■■□ 3.02
LTBP4-227	ENST00000600026	KIAA1107	Q9UPP5	1409 aa		33.9	■■■■□ 3.02
LTBP4-227	ENST00000600026	FGD6	Q6ZV73	1430 aa		33.89	■■■■□ 3.02
LTBP4-227	ENST00000600026	ZMYM4	Q5VZL5	1548 aa		33.88	■■■■□ 3.01
LTBP4-227	ENST00000600026	ZNF518A	Q6AHZ1	1483 aa		33.88	■■■■□ 3.01
LTBP4-227	ENST00000600026	KDM5C	P41229	1560 aa		33.87	■■■■□ 3.01
LTBP4-227	ENST00000600026	TRAPPC8	Q9Y2L5	1435 aa		33.87	■■■■□ 3.01
LTBP4-227	ENST00000600026	MBD5	Q9P267	1494 aa		33.82	■■■■□ 3.01
LTBP4-227	ENST00000600026	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.82	■■■■□ 3
LTBP4-227	ENST00000600026	TCOF1	Q13428	1488 aa	Known RBP	33.82	■■■■□ 3
LTBP4-227	ENST00000600026	ARHGEF5	Q12774	1597 aa		33.81	■■■■□ 3
LTBP4-227	ENST00000600026	HECW2	Q9P2P5	1572 aa		33.79	■■■■□ 3
LTBP4-227	ENST00000600026	AFAP1	Q8N556	730 aa		33.78	■■■■□ 3
LTBP4-227	ENST00000600026	CCDC141	Q6ZP82	1450 aa		33.76	■■■□□ 2.99
LTBP4-227	ENST00000600026	ARHGEF40	Q8TER5	1519 aa		33.75	■■■□□ 2.99
LTBP4-227	ENST00000600026	ZFYVE16	Q7Z3T8	1539 aa		33.74	■■■□□ 2.99
LTBP4-227	ENST00000600026	MAGI2	Q86UL8	1455 aa		33.74	■■■□□ 2.99
LTBP4-227	ENST00000600026	INO80	Q9ULG1	1556 aa	Predicted RBP	33.72	■■■□□ 2.99
LTBP4-227	ENST00000600026	MLH3	Q9UHC1	1453 aa		33.71	■■■□□ 2.99
LTBP4-227	ENST00000600026	KIDINS220	Q9ULH0	1771 aa		33.71	■■■□□ 2.99
LTBP4-227	ENST00000600026	CROCC2	H7BZ55	1655 aa		33.71	■■■□□ 2.99
LTBP4-227	ENST00000600026	DNMT1	P26358	1616 aa	Known RBP	33.69	■■■□□ 2.98
LTBP4-227	ENST00000600026	YEATS2	Q9ULM3	1422 aa		33.69	■■■□□ 2.98
LTBP4-227	ENST00000600026	ABCA6	Q8N139	1617 aa		33.68	■■■□□ 2.98
LTBP4-227	ENST00000600026	ATP7A	Q04656	1500 aa		33.67	■■■□□ 2.98
LTBP4-227	ENST00000600026	DIP2C	Q9Y2E4	1556 aa		33.65	■■■□□ 2.98
LTBP4-227	ENST00000600026	SPAG9	O60271	1321 aa	Known RBP	33.64	■■■□□ 2.98
LTBP4-227	ENST00000600026	RSPH4A	Q5TD94	716 aa		33.64	■■■□□ 2.98
LTBP4-227	ENST00000600026	RRBP1	Q9P2E9	1410 aa	Known RBP	33.63	■■■□□ 2.97
LTBP4-227	ENST00000600026	FAM50A	Q14320	339 aa	Known RBP	33.63	■■■□□ 2.97
LTBP4-227	ENST00000600026	MAST1	Q9Y2H9	1570 aa		33.63	■■■□□ 2.97
LTBP4-227	ENST00000600026	MYT1L	Q9UL68	1186 aa		33.61	■■■□□ 2.97
LTBP4-227	ENST00000600026	DAPK1	P53355	1430 aa		33.61	■■■□□ 2.97
LTBP4-227	ENST00000600026	ABCC5	O15440	1437 aa		33.6	■■■□□ 2.97
LTBP4-227	ENST00000600026	SHANK2	Q9UPX8	1470 aa		33.57	■■■□□ 2.97
LTBP4-227	ENST00000600026	RTEL1-TNFRSF6B	F6WH68	1400 aa		33.57	■■■□□ 2.96
LTBP4-227	ENST00000600026	C9orf84	Q5VXU9	1444 aa		33.55	■■■□□ 2.96
LTBP4-227	ENST00000600026	SIGLEC1	Q9BZZ2	1709 aa		33.55	■■■□□ 2.96
LTBP4-227	ENST00000600026	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	33.55	■■■□□ 2.96	2e-6	■■■■□ 20.4
LTBP4-227	ENST00000600026	ATP10A	O60312	1499 aa		33.55	■■■□□ 2.96
LTBP4-227	ENST00000600026	ADGB	Q8N7X0	1667 aa		33.55	■■■□□ 2.96
LTBP4-227	ENST00000600026	TSPY4	P0CV99	314 aa		33.53	■■■□□ 2.96
LTBP4-227	ENST00000600026	TSPY10	P0CW01	314 aa		33.53	■■■□□ 2.96
LTBP4-227	ENST00000600026	RERE	Q9P2R6	1566 aa		33.52	■■■□□ 2.96
LTBP4-227	ENST00000600026	PLXNC1	O60486	1568 aa		33.5	■■■□□ 2.95
LTBP4-227	ENST00000600026	A2M	P01023	1474 aa		33.43	■■■□□ 2.94
LTBP4-227	ENST00000600026	PTPRK	Q15262	1439 aa		33.42	■■■□□ 2.94
LTBP4-227	ENST00000600026	ADGRL2	O95490	1459 aa		33.4	■■■□□ 2.94
LTBP4-227	ENST00000600026	AGL	P35573	1532 aa		33.38	■■■□□ 2.93
LTBP4-227	ENST00000600026	CHIC2	Q9UKJ5	165 aa		33.38	■■■□□ 2.93
LTBP4-227	ENST00000600026	BCORL1	Q5H9F3	1711 aa		33.37	■■■□□ 2.93
LTBP4-227	ENST00000600026	ITGAE	P38570	1179 aa		33.36	■■■□□ 2.93
LTBP4-227	ENST00000600026	ARID4B	Q4LE39	1312 aa	Predicted RBP	33.34	■■■□□ 2.93
LTBP4-227	ENST00000600026	ANKRD30A	Q9BXX3	1397 aa		33.34	■■■□□ 2.93
LTBP4-227	ENST00000600026	DHX29	Q7Z478	1369 aa	Known RBP	33.33	■■■□□ 2.93
LTBP4-227	ENST00000600026	DUOX2	Q9NRD8	1548 aa		33.33	■■■□□ 2.93
LTBP4-227	ENST00000600026	NCOA1	Q15788	1441 aa		33.32	■■■□□ 2.92
LTBP4-227	ENST00000600026	KIF15	Q9NS87	1388 aa		33.32	■■■□□ 2.92
LTBP4-227	ENST00000600026	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.28	■■■□□ 2.92
LTBP4-227	ENST00000600026	ADAMTSL3	P82987	1691 aa		33.27	■■■□□ 2.92
LTBP4-227	ENST00000600026	ROCK1	Q13464	1354 aa		33.27	■■■□□ 2.92
LTBP4-227	ENST00000600026	TRIM26	Q12899	539 aa	Predicted RBP	33.27	■■■□□ 2.92
LTBP4-227	ENST00000600026	RRP7BP	Q9NSQ0	103 aa		33.27	■■■□□ 2.92
LTBP4-227	ENST00000600026	ERBIN	Q96RT1	1412 aa		33.22	■■■□□ 2.91
LTBP4-227	ENST00000600026	MADD	Q8WXG6	1647 aa		33.22	■■■□□ 2.91
LTBP4-227	ENST00000600026	FER1L4	A9Z1Z3	1794 aa		33.21	■■■□□ 2.91
LTBP4-227	ENST00000600026	MLEC	Q14165	292 aa		33.21	■■■□□ 2.91
LTBP4-227	ENST00000600026	RNF17	Q9BXT8	1623 aa	Known RBP	33.19	■■■□□ 2.9
LTBP4-227	ENST00000600026	GCC2	Q8IWJ2	1684 aa		33.18	■■■□□ 2.9
LTBP4-227	ENST00000600026	KIF3B	O15066	747 aa		33.15	■■■□□ 2.9

Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms