RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GPATCH8Q9UKJ3 1502 aaKnown RBP30.98■■■□□ 2.55
SHKBP1-221ENST00000599833 LRRC9Q6ZRR7 1453 aa30.97■■■□□ 2.55
SHKBP1-221ENST00000599833 ARHGAP5Q13017 1502 aa30.94■■■□□ 2.54
SHKBP1-221ENST00000599833 KANK4Q5T7N3 995 aaPredicted RBP30.91■■■□□ 2.54
SHKBP1-221ENST00000599833 SUPT6HQ7KZ85 1726 aaKnown RBP30.9■■■□□ 2.54
SHKBP1-221ENST00000599833 ADGRL1O94910 1474 aa30.9■■■□□ 2.54
SHKBP1-221ENST00000599833 RAPGEF3O95398 923 aa30.89■■■□□ 2.54
SHKBP1-221ENST00000599833 DENND4BO75064 1496 aaPredicted RBP30.89■■■□□ 2.53
SHKBP1-221ENST00000599833 NCOA2Q15596 1464 aa30.89■■■□□ 2.53
SHKBP1-221ENST00000599833 EFCAB2Q5VUJ9 269 aa30.88■■■□□ 2.53
SHKBP1-221ENST00000599833 ABCC1P33527 1531 aa30.87■■■□□ 2.53
SHKBP1-221ENST00000599833 ARHGEF12Q9NZN5 1544 aa30.86■■■□□ 2.53
SHKBP1-221ENST00000599833 SAMD9LQ8IVG5 1584 aa30.86■■■□□ 2.53
SHKBP1-221ENST00000599833 SCAPERQ9BY12 1400 aa30.85■■■□□ 2.53
SHKBP1-221ENST00000599833 ZMYM4Q5VZL5 1548 aa30.84■■■□□ 2.53
SHKBP1-221ENST00000599833 POGZQ7Z3K3 1410 aa30.84■■■□□ 2.53
SHKBP1-221ENST00000599833 ITSN2Q9NZM3 1697 aa30.82■■■□□ 2.52
SHKBP1-221ENST00000599833 CCNB3Q8WWL7 1395 aa30.81■■■□□ 2.52
SHKBP1-221ENST00000599833 KDM5CP41229 1560 aa30.79■■■□□ 2.52
SHKBP1-221ENST00000599833 TRAPPC8Q9Y2L5 1435 aa30.73■■■□□ 2.51
SHKBP1-221ENST00000599833 ARHGEF40Q8TER5 1519 aa30.73■■■□□ 2.51
SHKBP1-221ENST00000599833 ZNF518AQ6AHZ1 1483 aa30.72■■■□□ 2.51
SHKBP1-221ENST00000599833 SYCP2Q9BX26 1530 aa30.72■■■□□ 2.51
SHKBP1-221ENST00000599833 CFDP1Q9UEE9 299 aaPredicted RBP30.7■■■□□ 2.51
SHKBP1-221ENST00000599833 YEATS2Q9ULM3 1422 aa30.69■■■□□ 2.5
SHKBP1-221ENST00000599833 KIAA1107Q9UPP5 1409 aa30.69■■■□□ 2.5
SHKBP1-221ENST00000599833 MAGI2Q86UL8 1455 aa30.69■■■□□ 2.5
SHKBP1-221ENST00000599833 AFAP1Q8N556 730 aa30.67■■■□□ 2.5
SHKBP1-221ENST00000599833 ZNF644Q9H582 1327 aaPredicted RBP30.67■■■□□ 2.5
SHKBP1-221ENST00000599833 SIGLEC1Q9BZZ2 1709 aa30.67■■■□□ 2.5
SHKBP1-221ENST00000599833 ZFYVE16Q7Z3T8 1539 aa30.66■■■□□ 2.5
SHKBP1-221ENST00000599833 MBD5Q9P267 1494 aa30.65■■■□□ 2.5
SHKBP1-221ENST00000599833 PLEKHH2Q8IVE3 1493 aa30.64■■■□□ 2.5
SHKBP1-221ENST00000599833 ZNF777Q9ULD5 760 aaPredicted RBP30.64■■■□□ 2.5
SHKBP1-221ENST00000599833 HECW2Q9P2P5 1572 aa30.63■■■□□ 2.49
SHKBP1-221ENST00000599833 MLH3Q9UHC1 1453 aa30.63■■■□□ 2.49
SHKBP1-221ENST00000599833 MYOM3Q5VTT5 1437 aa30.62■■■□□ 2.49
SHKBP1-221ENST00000599833 CAMSAP2Q08AD1 1489 aa30.62■■■□□ 2.49
SHKBP1-221ENST00000599833 APLP2Q06481 763 aa30.61■■■□□ 2.49
SHKBP1-221ENST00000599833 KIDINS220Q9ULH0 1771 aa30.61■■■□□ 2.49
SHKBP1-221ENST00000599833 HNRNPMP52272 730 aaKnown RBP eCLIP30.59■■■□□ 2.49
SHKBP1-221ENST00000599833 KDM4FA0A1W2PPD8 638 aa30.58■■■□□ 2.49
SHKBP1-221ENST00000599833 ABCA6Q8N139 1617 aa30.58■■■□□ 2.49
SHKBP1-221ENST00000599833 DIP2CQ9Y2E4 1556 aa30.58■■■□□ 2.49
SHKBP1-221ENST00000599833 MIA2Q96PC5 1412 aa30.57■■■□□ 2.48
SHKBP1-221ENST00000599833 INO80Q9ULG1 1556 aaPredicted RBP30.55■■■□□ 2.48
SHKBP1-221ENST00000599833 ARHGEF5Q12774 1597 aa30.52■■■□□ 2.48
SHKBP1-221ENST00000599833 ATP10AO60312 1499 aa30.5■■■□□ 2.47
SHKBP1-221ENST00000599833 REREQ9P2R6 1566 aa30.49■■■□□ 2.47
SHKBP1-221ENST00000599833 FGD6Q6ZV73 1430 aa30.47■■■□□ 2.47
SHKBP1-221ENST00000599833 ATP7AQ04656 1500 aa30.47■■■□□ 2.47
SHKBP1-221ENST00000599833 BCORL1Q5H9F3 1711 aa30.47■■■□□ 2.47
SHKBP1-221ENST00000599833 PTPN23Q9H3S7 1636 aa30.47■■■□□ 2.47
SHKBP1-221ENST00000599833 C9orf84Q5VXU9 1444 aa30.47■■■□□ 2.47
SHKBP1-221ENST00000599833 ADAMTSL3P82987 1691 aa30.46■■■□□ 2.47
SHKBP1-221ENST00000599833 TCOF1Q13428 1488 aaKnown RBP30.46■■■□□ 2.47
SHKBP1-221ENST00000599833 CCDC141Q6ZP82 1450 aa30.46■■■□□ 2.47
SHKBP1-221ENST00000599833 SPAG9O60271 1321 aaKnown RBP30.43■■■□□ 2.46
SHKBP1-221ENST00000599833 RTEL1-TNFRSF6BF6WH68 1400 aa30.39■■■□□ 2.46
SHKBP1-221ENST00000599833 PLXNC1O60486 1568 aa30.38■■■□□ 2.45
SHKBP1-221ENST00000599833 MAST1Q9Y2H9 1570 aa30.37■■■□□ 2.45
SHKBP1-221ENST00000599833 AGLP35573 1532 aa30.37■■■□□ 2.45
SHKBP1-221ENST00000599833 ADGBQ8N7X0 1667 aa30.36■■■□□ 2.45
SHKBP1-221ENST00000599833 RSPH4AQ5TD94 716 aa30.35■■■□□ 2.45
SHKBP1-221ENST00000599833 CROCC2H7BZ55 1655 aa30.35■■■□□ 2.45
SHKBP1-221ENST00000599833 MADDQ8WXG6 1647 aa30.33■■■□□ 2.45
SHKBP1-221ENST00000599833 DNMT1P26358 1616 aaKnown RBP30.33■■■□□ 2.45
SHKBP1-221ENST00000599833 PPARGC1BQ86YN6 1023 aaKnown RBP30.32■■■□□ 2.44
SHKBP1-221ENST00000599833 ABCC5O15440 1437 aa30.31■■■□□ 2.44
SHKBP1-221ENST00000599833 A2MP01023 1474 aa30.29■■■□□ 2.44
SHKBP1-221ENST00000599833 MYT1LQ9UL68 1186 aa30.28■■■□□ 2.44
SHKBP1-221ENST00000599833 ARID4BQ4LE39 1312 aaPredicted RBP30.27■■■□□ 2.44
SHKBP1-221ENST00000599833 SHANK2Q9UPX8 1470 aa30.26■■■□□ 2.44
SHKBP1-221ENST00000599833 DAPK1P53355 1430 aa30.26■■■□□ 2.43
SHKBP1-221ENST00000599833 RIMS1Q86UR5 1692 aaKnown RBP30.22■■■□□ 2.43
SHKBP1-221ENST00000599833 FER1L4A9Z1Z3 1794 aa30.22■■■□□ 2.43
SHKBP1-221ENST00000599833 PTPRMP28827 1452 aa30.19■■■□□ 2.42
SHKBP1-221ENST00000599833 DHX29Q7Z478 1369 aaKnown RBP30.19■■■□□ 2.42
SHKBP1-221ENST00000599833 TSPY4P0CV99 314 aa30.18■■■□□ 2.42
SHKBP1-221ENST00000599833 TSPY10P0CW01 314 aa30.18■■■□□ 2.42
SHKBP1-221ENST00000599833 MLECQ14165 292 aa30.15■■■□□ 2.42
SHKBP1-221ENST00000599833 PTPRKQ15262 1439 aa30.14■■■□□ 2.42
SHKBP1-221ENST00000599833 RRBP1Q9P2E9 1410 aaKnown RBP30.13■■■□□ 2.41
SHKBP1-221ENST00000599833 AEBP2Q6ZN18 517 aaPredicted RBP30.13■■■□□ 2.41
SHKBP1-221ENST00000599833 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.12■■■□□ 2.41
SHKBP1-221ENST00000599833 ADGRL2O95490 1459 aa30.12■■■□□ 2.41
SHKBP1-221ENST00000599833 FAM50AQ14320 339 aaKnown RBP30.09■■■□□ 2.41
SHKBP1-221ENST00000599833 EIF2AK4Q9P2K8 1649 aaKnown RBP30.07■■■□□ 2.4
SHKBP1-221ENST00000599833 DUOX2Q9NRD8 1548 aa30.06■■■□□ 2.4
SHKBP1-221ENST00000599833 NCOA1Q15788 1441 aa30.06■■■□□ 2.4
SHKBP1-221ENST00000599833 RNF17Q9BXT8 1623 aaKnown RBP30.05■■■□□ 2.4
SHKBP1-221ENST00000599833 KIF15Q9NS87 1388 aa30.04■■■□□ 2.4
SHKBP1-221ENST00000599833 MROH1Q8NDA8 1641 aa30.04■■■□□ 2.4
SHKBP1-221ENST00000599833 MROH2AA6NES4 1674 aa30.01■■■□□ 2.4
SHKBP1-221ENST00000599833 C3P01024 1663 aa30.01■■■□□ 2.4
SHKBP1-221ENST00000599833 CHIC2Q9UKJ5 165 aa30■■■□□ 2.39
SHKBP1-221ENST00000599833 CLTCQ00610 1675 aaKnown RBP30■■■□□ 2.39
SHKBP1-221ENST00000599833 ERBINQ96RT1 1412 aa29.98■■■□□ 2.39
SHKBP1-221ENST00000599833 RRP7BPQ9NSQ0 103 aa29.98■■■□□ 2.39
SHKBP1-221ENST00000599833 ANKRD30AQ9BXX3 1397 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms