RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ZFYVE16Q7Z3T8 1539 aa15.94■□□□□ 0.14
VRK3-216ENST00000599342 CASKIN1Q8WXD9 1431 aa15.94■□□□□ 0.14
VRK3-216ENST00000599342 POGZQ7Z3K3 1410 aa15.93■□□□□ 0.14
VRK3-216ENST00000599342 PTPRMP28827 1452 aa15.92■□□□□ 0.14
VRK3-216ENST00000599342 MAGI2Q86UL8 1455 aa15.92■□□□□ 0.14
VRK3-216ENST00000599342 LRRIQ1Q96JM4 1722 aa15.92■□□□□ 0.14
VRK3-216ENST00000599342 ARHGAP5Q13017 1502 aa15.92■□□□□ 0.14
VRK3-216ENST00000599342 YEATS2Q9ULM3 1422 aa15.91■□□□□ 0.14
VRK3-216ENST00000599342 FYCO1Q9BQS8 1478 aa15.9■□□□□ 0.14
VRK3-216ENST00000599342 MADDQ8WXG6 1647 aa15.9■□□□□ 0.14
VRK3-216ENST00000599342 ZNF518AQ6AHZ1 1483 aa15.87■□□□□ 0.13
VRK3-216ENST00000599342 RIMS1Q86UR5 1692 aaKnown RBP15.85■□□□□ 0.13
VRK3-216ENST00000599342 C9orf84Q5VXU9 1444 aa15.84■□□□□ 0.13
VRK3-216ENST00000599342 PREX2Q70Z35 1606 aa15.83■□□□□ 0.13
VRK3-216ENST00000599342 MYT1LQ9UL68 1186 aa15.83■□□□□ 0.12
VRK3-216ENST00000599342 ATP10AO60312 1499 aa15.83■□□□□ 0.12
VRK3-216ENST00000599342 MLECQ14165 292 aa15.82■□□□□ 0.12
VRK3-216ENST00000599342 KDM5CP41229 1560 aa15.82■□□□□ 0.12
VRK3-216ENST00000599342 SIGLEC1Q9BZZ2 1709 aa15.82■□□□□ 0.12
VRK3-216ENST00000599342 CDC42BPBQ9Y5S2 1711 aa15.82■□□□□ 0.12
VRK3-216ENST00000599342 AFAP1Q8N556 730 aa15.8■□□□□ 0.12
VRK3-216ENST00000599342 ABCC1P33527 1531 aa15.79■□□□□ 0.12
VRK3-216ENST00000599342 PLPPR3Q6T4P5 718 aa15.79■□□□□ 0.12
VRK3-216ENST00000599342 FER1L4A9Z1Z3 1794 aa15.77■□□□□ 0.12
VRK3-216ENST00000599342 CDC42BPAQ5VT25 1732 aa15.77■□□□□ 0.11
VRK3-216ENST00000599342 LMTK3Q96Q04 1460 aa15.76■□□□□ 0.11
VRK3-216ENST00000599342 MLH3Q9UHC1 1453 aa15.76■□□□□ 0.11
VRK3-216ENST00000599342 ITSN2Q9NZM3 1697 aa15.76■□□□□ 0.11
VRK3-216ENST00000599342 TRAPPC8Q9Y2L5 1435 aa15.76■□□□□ 0.11
VRK3-216ENST00000599342 MTUS2Q5JR59 1369 aa15.75■□□□□ 0.11
VRK3-216ENST00000599342 DIP2CQ9Y2E4 1556 aa15.75■□□□□ 0.11
VRK3-216ENST00000599342 ARHGEF12Q9NZN5 1544 aa15.75■□□□□ 0.11
VRK3-216ENST00000599342 CEP162Q5TB80 1403 aa15.75■□□□□ 0.11
VRK3-216ENST00000599342 ZNF777Q9ULD5 760 aaPredicted RBP15.74■□□□□ 0.11
VRK3-216ENST00000599342 ABCA6Q8N139 1617 aa15.73■□□□□ 0.11
VRK3-216ENST00000599342 ILDR1Q86SU0 546 aaPredicted RBP15.73■□□□□ 0.11
VRK3-216ENST00000599342 REREQ9P2R6 1566 aa15.73■□□□□ 0.11
VRK3-216ENST00000599342 GPATCH8Q9UKJ3 1502 aaKnown RBP15.73■□□□□ 0.11
VRK3-216ENST00000599342 CCNB3Q8WWL7 1395 aa15.72■□□□□ 0.11
VRK3-216ENST00000599342 SAMD9LQ8IVG5 1584 aa15.71■□□□□ 0.11
VRK3-216ENST00000599342 SYCP2Q9BX26 1530 aa15.71■□□□□ 0.11
VRK3-216ENST00000599342 CFDP1Q9UEE9 299 aaPredicted RBP15.7■□□□□ 0.1
VRK3-216ENST00000599342 EHBP1L1Q8N3D4 1523 aa15.69■□□□□ 0.1
VRK3-216ENST00000599342 PLEKHH2Q8IVE3 1493 aa15.69■□□□□ 0.1
VRK3-216ENST00000599342 AGLP35573 1532 aa15.68■□□□□ 0.1
VRK3-216ENST00000599342 KIDINS220Q9ULH0 1771 aa15.67■□□□□ 0.1
VRK3-216ENST00000599342 HSPA2P54652 639 aa15.67■□□□□ 0.1
VRK3-216ENST00000599342 ESF1Q9H501 851 aaKnown RBP15.67■□□□□ 0.1
VRK3-216ENST00000599342 KIAA1107Q9UPP5 1409 aa15.67■□□□□ 0.1
VRK3-216ENST00000599342 SPAG9O60271 1321 aaKnown RBP15.67■□□□□ 0.1
VRK3-216ENST00000599342 HNRNPMP52272 730 aaKnown RBP eCLIP15.66■□□□□ 0.1
VRK3-216ENST00000599342 CEBPAP49715 358 aaPredicted RBP15.65■□□□□ 0.1
VRK3-216ENST00000599342 TIAM1Q13009 1591 aa15.64■□□□□ 0.09
VRK3-216ENST00000599342 PREX1Q8TCU6 1659 aa15.63■□□□□ 0.09
VRK3-216ENST00000599342 ATP7AQ04656 1500 aa15.63■□□□□ 0.09
VRK3-216ENST00000599342 UHRF1BP1Q6BDS2 1440 aa15.61■□□□□ 0.09
VRK3-216ENST00000599342 INO80Q9ULG1 1556 aaPredicted RBP15.61■□□□□ 0.09
VRK3-216ENST00000599342 CNTLNQ9NXG0 1405 aa15.6■□□□□ 0.09
VRK3-216ENST00000599342 SUPT6HQ7KZ85 1726 aaKnown RBP15.59■□□□□ 0.09
VRK3-216ENST00000599342 C3P01024 1663 aa15.58■□□□□ 0.08
VRK3-216ENST00000599342 LOC105371045A0A1W2PR82 267 aa15.58■□□□□ 0.08
VRK3-216ENST00000599342 ZNF644Q9H582 1327 aaPredicted RBP15.58■□□□□ 0.08
VRK3-216ENST00000599342 VPS8Q8N3P4 1428 aa15.58■□□□□ 0.08
VRK3-216ENST00000599342 A2MP01023 1474 aa15.58■□□□□ 0.08
VRK3-216ENST00000599342 NCOA2Q15596 1464 aa15.58■□□□□ 0.08
VRK3-216ENST00000599342 FBXO41Q8TF61 875 aa15.56■□□□□ 0.08
VRK3-216ENST00000599342 PLXNC1O60486 1568 aa15.56■□□□□ 0.08
VRK3-216ENST00000599342 MBD5Q9P267 1494 aa15.55■□□□□ 0.08
VRK3-216ENST00000599342 MROH2AA6NES4 1674 aa15.54■□□□□ 0.08
VRK3-216ENST00000599342 ADGBQ8N7X0 1667 aa15.54■□□□□ 0.08
VRK3-216ENST00000599342 CAMSAP2Q08AD1 1489 aa15.53■□□□□ 0.08
VRK3-216ENST00000599342 RTEL1-TNFRSF6BF6WH68 1400 aa15.53■□□□□ 0.08
VRK3-216ENST00000599342 SETD1BQ9UPS6 1966 aaKnown RBP15.53■□□□□ 0.08
VRK3-216ENST00000599342 CCDC141Q6ZP82 1450 aa15.52■□□□□ 0.08
VRK3-216ENST00000599342 GGT6Q6P531 493 aa15.52■□□□□ 0.08
VRK3-216ENST00000599342 LRRC9Q6ZRR7 1453 aa15.52■□□□□ 0.07
VRK3-216ENST00000599342 ZMYM3Q14202 1370 aa15.51■□□□□ 0.07
VRK3-216ENST00000599342 DMRT2Q9Y5R5 561 aa15.51■□□□□ 0.07
VRK3-216ENST00000599342 NPATQ14207 1427 aa15.51■□□□□ 0.07
VRK3-216ENST00000599342 RSPH4AQ5TD94 716 aa15.5■□□□□ 0.07
VRK3-216ENST00000599342 CLTCQ00610 1675 aaKnown RBP15.5■□□□□ 0.07
VRK3-216ENST00000599342 PPP6R1Q9UPN7 881 aa15.48■□□□□ 0.07
VRK3-216ENST00000599342 DHX29Q7Z478 1369 aaKnown RBP15.48■□□□□ 0.07
VRK3-216ENST00000599342 MAP3K1Q13233 1512 aa15.48■□□□□ 0.07
VRK3-216ENST00000599342 STRCQ7RTU9 1775 aa15.47■□□□□ 0.07
VRK3-216ENST00000599342 ARHGEF5Q12774 1597 aa15.46■□□□□ 0.07
VRK3-216ENST00000599342 TSPY4P0CV99 314 aa15.45■□□□□ 0.06
VRK3-216ENST00000599342 TSPY10P0CW01 314 aa15.45■□□□□ 0.06
VRK3-216ENST00000599342 CERKQ8TCT0 537 aa15.45■□□□□ 0.06
VRK3-216ENST00000599342 KIF3BO15066 747 aa15.44■□□□□ 0.06
VRK3-216ENST00000599342 APLP2Q06481 763 aa15.43■□□□□ 0.06
VRK3-216ENST00000599342 KANK4Q5T7N3 995 aaPredicted RBP15.43■□□□□ 0.06
VRK3-216ENST00000599342 PTPRTO14522 1441 aa15.43■□□□□ 0.06
VRK3-216ENST00000599342 PTPRKQ15262 1439 aa15.43■□□□□ 0.06
VRK3-216ENST00000599342 NCOA1Q15788 1441 aa15.43■□□□□ 0.06
VRK3-216ENST00000599342 MYO3AQ8NEV4 1616 aa15.42■□□□□ 0.06
VRK3-216ENST00000599342 MYOM3Q5VTT5 1437 aa15.42■□□□□ 0.06
VRK3-216ENST00000599342 MIA2Q96PC5 1412 aa15.42■□□□□ 0.06
VRK3-216ENST00000599342 CAMSAP1Q5T5Y3 1602 aa15.41■□□□□ 0.06
VRK3-216ENST00000599342 KDM5DQ9BY66 1539 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms