RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 EHMT2Q96KQ7 1210 aa22.26■■□□□ 1.15
TRIM28-211ENST00000597968 CCDC18Q5T9S5 1454 aa22.26■■□□□ 1.15
TRIM28-211ENST00000597968 CASKIN1Q8WXD9 1431 aa22.24■■□□□ 1.15
TRIM28-211ENST00000597968 MYO5CQ9NQX4 1742 aa22.24■■□□□ 1.15
TRIM28-211ENST00000597968 MADDQ8WXG6 1647 aa22.21■■□□□ 1.15
TRIM28-211ENST00000597968 YEATS2Q9ULM3 1422 aa22.2■■□□□ 1.14
TRIM28-211ENST00000597968 ZNF518AQ6AHZ1 1483 aa22.2■■□□□ 1.14
TRIM28-211ENST00000597968 ATP10AO60312 1499 aa22.17■■□□□ 1.14
TRIM28-211ENST00000597968 ARHGAP5Q13017 1502 aa22.16■■□□□ 1.14
TRIM28-211ENST00000597968 FYCO1Q9BQS8 1478 aa22.16■■□□□ 1.14
TRIM28-211ENST00000597968 C9orf84Q5VXU9 1444 aa22.15■■□□□ 1.14
TRIM28-211ENST00000597968 PCF11O94913 1555 aaKnown RBP22.13■■□□□ 1.13
TRIM28-211ENST00000597968 KDM5CP41229 1560 aa22.13■■□□□ 1.13
TRIM28-211ENST00000597968 ILDR1Q86SU0 546 aaPredicted RBP22.13■■□□□ 1.13
TRIM28-211ENST00000597968 LRRIQ1Q96JM4 1722 aa22.12■■□□□ 1.13
TRIM28-211ENST00000597968 RIMS1Q86UR5 1692 aaKnown RBP22.1■■□□□ 1.13
TRIM28-211ENST00000597968 LMTK3Q96Q04 1460 aa22.09■■□□□ 1.13
TRIM28-211ENST00000597968 MLH3Q9UHC1 1453 aa22.09■■□□□ 1.13
TRIM28-211ENST00000597968 REREQ9P2R6 1566 aa22.08■■□□□ 1.13
TRIM28-211ENST00000597968 PREX2Q70Z35 1606 aa22.08■■□□□ 1.13
TRIM28-211ENST00000597968 ARHGEF12Q9NZN5 1544 aa22.07■■□□□ 1.12
TRIM28-211ENST00000597968 CDC42BPBQ9Y5S2 1711 aa22.06■■□□□ 1.12
TRIM28-211ENST00000597968 AFAP1Q8N556 730 aa22.06■■□□□ 1.12
TRIM28-211ENST00000597968 SIGLEC1Q9BZZ2 1709 aa22.06■■□□□ 1.12
TRIM28-211ENST00000597968 ABCC1P33527 1531 aa22.04■■□□□ 1.12
TRIM28-211ENST00000597968 FER1L4A9Z1Z3 1794 aa22.02■■□□□ 1.12
TRIM28-211ENST00000597968 MLECQ14165 292 aa22.01■■□□□ 1.11
TRIM28-211ENST00000597968 DIP2CQ9Y2E4 1556 aa21.99■■□□□ 1.11
TRIM28-211ENST00000597968 AGLP35573 1532 aa21.99■■□□□ 1.11
TRIM28-211ENST00000597968 MYT1LQ9UL68 1186 aa21.98■■□□□ 1.11
TRIM28-211ENST00000597968 TRAPPC8Q9Y2L5 1435 aa21.97■■□□□ 1.11
TRIM28-211ENST00000597968 CDC42BPAQ5VT25 1732 aa21.97■■□□□ 1.11
TRIM28-211ENST00000597968 ITSN2Q9NZM3 1697 aa21.96■■□□□ 1.11
TRIM28-211ENST00000597968 KIAA1107Q9UPP5 1409 aa21.96■■□□□ 1.11
TRIM28-211ENST00000597968 PLEKHH2Q8IVE3 1493 aa21.96■■□□□ 1.11
TRIM28-211ENST00000597968 GPATCH8Q9UKJ3 1502 aaKnown RBP21.96■■□□□ 1.11
TRIM28-211ENST00000597968 FBXO41Q8TF61 875 aa21.94■■□□□ 1.1
TRIM28-211ENST00000597968 ABCA6Q8N139 1617 aa21.93■■□□□ 1.1
TRIM28-211ENST00000597968 MTUS2Q5JR59 1369 aa21.91■■□□□ 1.1
TRIM28-211ENST00000597968 CNTLNQ9NXG0 1405 aa21.89■■□□□ 1.1
TRIM28-211ENST00000597968 CCNB3Q8WWL7 1395 aa21.89■■□□□ 1.1
TRIM28-211ENST00000597968 ESF1Q9H501 851 aaKnown RBP21.89■■□□□ 1.09
TRIM28-211ENST00000597968 CFDP1Q9UEE9 299 aaPredicted RBP21.89■■□□□ 1.09
TRIM28-211ENST00000597968 SAMD9LQ8IVG5 1584 aa21.89■■□□□ 1.09
TRIM28-211ENST00000597968 KIDINS220Q9ULH0 1771 aa21.89■■□□□ 1.09
TRIM28-211ENST00000597968 PREX1Q8TCU6 1659 aa21.88■■□□□ 1.09
TRIM28-211ENST00000597968 HSPA2P54652 639 aa21.88■■□□□ 1.09
TRIM28-211ENST00000597968 PLPPR3Q6T4P5 718 aa21.87■■□□□ 1.09
TRIM28-211ENST00000597968 SPAG9O60271 1321 aaKnown RBP21.86■■□□□ 1.09
TRIM28-211ENST00000597968 ZNF777Q9ULD5 760 aaPredicted RBP21.86■■□□□ 1.09
TRIM28-211ENST00000597968 UHRF1BP1Q6BDS2 1440 aa21.86■■□□□ 1.09
TRIM28-211ENST00000597968 SYCP2Q9BX26 1530 aa21.85■■□□□ 1.09
TRIM28-211ENST00000597968 SETD1BQ9UPS6 1966 aaKnown RBP21.85■■□□□ 1.09
TRIM28-211ENST00000597968 EHBP1L1Q8N3D4 1523 aa21.85■■□□□ 1.09
TRIM28-211ENST00000597968 CEP162Q5TB80 1403 aa21.84■■□□□ 1.09
TRIM28-211ENST00000597968 DMRT2Q9Y5R5 561 aa21.84■■□□□ 1.09
TRIM28-211ENST00000597968 CEBPAP49715 358 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-211ENST00000597968 HNRNPMP52272 730 aaKnown RBP eCLIP21.82■■□□□ 1.08
TRIM28-211ENST00000597968 ATP7AQ04656 1500 aa21.8■■□□□ 1.08
TRIM28-211ENST00000597968 PPP6R1Q9UPN7 881 aa21.8■■□□□ 1.08
TRIM28-211ENST00000597968 INO80Q9ULG1 1556 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-211ENST00000597968 NPATQ14207 1427 aa21.78■■□□□ 1.08
TRIM28-211ENST00000597968 C3P01024 1663 aa21.78■■□□□ 1.08
TRIM28-211ENST00000597968 RTEL1-TNFRSF6BF6WH68 1400 aa21.77■■□□□ 1.08
TRIM28-211ENST00000597968 PLXNC1O60486 1568 aa21.77■■□□□ 1.08
TRIM28-211ENST00000597968 TIAM1Q13009 1591 aa21.76■■□□□ 1.07
TRIM28-211ENST00000597968 RSPH4AQ5TD94 716 aa21.76■■□□□ 1.07
TRIM28-211ENST00000597968 A2MP01023 1474 aa21.76■■□□□ 1.07
TRIM28-211ENST00000597968 MROH2AA6NES4 1674 aa21.75■■□□□ 1.07
TRIM28-211ENST00000597968 MBD5Q9P267 1494 aa21.74■■□□□ 1.07
TRIM28-211ENST00000597968 ZMYM3Q14202 1370 aa21.72■■□□□ 1.07
TRIM28-211ENST00000597968 CERKQ8TCT0 537 aa21.71■■□□□ 1.07
TRIM28-211ENST00000597968 PTPRTO14522 1441 aa21.71■■□□□ 1.07
TRIM28-211ENST00000597968 ADGBQ8N7X0 1667 aa21.69■■□□□ 1.06
TRIM28-211ENST00000597968 SUPT6HQ7KZ85 1726 aaKnown RBP21.69■■□□□ 1.06
TRIM28-211ENST00000597968 NCOA2Q15596 1464 aa21.68■■□□□ 1.06
TRIM28-211ENST00000597968 STRCQ7RTU9 1775 aa21.67■■□□□ 1.06
TRIM28-211ENST00000597968 VPS8Q8N3P4 1428 aa21.66■■□□□ 1.06
TRIM28-211ENST00000597968 DHX29Q7Z478 1369 aaKnown RBP21.66■■□□□ 1.06
TRIM28-211ENST00000597968 ZNF644Q9H582 1327 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-211ENST00000597968 CCDC141Q6ZP82 1450 aa21.65■■□□□ 1.06
TRIM28-211ENST00000597968 FAM135AQ9P2D6 1515 aa21.65■■□□□ 1.06
TRIM28-211ENST00000597968 MAP3K1Q13233 1512 aa21.64■■□□□ 1.05
TRIM28-211ENST00000597968 NCOA1Q15788 1441 aa21.63■■□□□ 1.05
TRIM28-211ENST00000597968 GGT6Q6P531 493 aa21.62■■□□□ 1.05
TRIM28-211ENST00000597968 CAMSAP2Q08AD1 1489 aa21.6■■□□□ 1.05
TRIM28-211ENST00000597968 LRRC9Q6ZRR7 1453 aa21.6■■□□□ 1.05
TRIM28-211ENST00000597968 PTPRKQ15262 1439 aa21.6■■□□□ 1.05
TRIM28-211ENST00000597968 ARHGEF5Q12774 1597 aa21.59■■□□□ 1.05
TRIM28-211ENST00000597968 CLTCQ00610 1675 aaKnown RBP21.59■■□□□ 1.05
TRIM28-211ENST00000597968 TSPY4P0CV99 314 aa21.58■■□□□ 1.05
TRIM28-211ENST00000597968 TSPY10P0CW01 314 aa21.58■■□□□ 1.05
TRIM28-211ENST00000597968 PLA2R1Q13018 1463 aa21.58■■□□□ 1.04
TRIM28-211ENST00000597968 ZNF142P52746 1687 aaPredicted RBP21.56■■□□□ 1.04
TRIM28-211ENST00000597968 PKD2Q13563 968 aa21.55■■□□□ 1.04
TRIM28-211ENST00000597968 CAMSAP1Q5T5Y3 1602 aa21.55■■□□□ 1.04
TRIM28-211ENST00000597968 MIA2Q96PC5 1412 aa21.55■■□□□ 1.04
TRIM28-211ENST00000597968 IQSEC2Q5JU85 1478 aa21.54■■□□□ 1.04
TRIM28-211ENST00000597968 MYO3AQ8NEV4 1616 aa21.52■■□□□ 1.04
TRIM28-211ENST00000597968 LOC105371045A0A1W2PR82 267 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms