RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-205ENST00000597776 POGZQ7Z3K3 1410 aa17.32■□□□□ 0.36
LSM4-205ENST00000597776 MYO5CQ9NQX4 1742 aa17.32■□□□□ 0.36
LSM4-205ENST00000597776 TROQ12816 1431 aaPredicted RBP17.31■□□□□ 0.36
LSM4-205ENST00000597776 CDK11AQ9UQ88 783 aaPredicted RBP17.31■□□□□ 0.36
LSM4-205ENST00000597776 RIMS1Q86UR5 1692 aaKnown RBP17.31■□□□□ 0.36
LSM4-205ENST00000597776 MAGI2Q86UL8 1455 aa17.29■□□□□ 0.36
LSM4-205ENST00000597776 PCF11O94913 1555 aaKnown RBP17.28■□□□□ 0.36
LSM4-205ENST00000597776 EFCAB2Q5VUJ9 269 aa17.28■□□□□ 0.36
LSM4-205ENST00000597776 CLIP1P30622 1438 aa17.27■□□□□ 0.35
LSM4-205ENST00000597776 ARHGAP5Q13017 1502 aa17.26■□□□□ 0.35
LSM4-205ENST00000597776 MLECQ14165 292 aa17.25■□□□□ 0.35
LSM4-205ENST00000597776 PLPPR3Q6T4P5 718 aa17.25■□□□□ 0.35
LSM4-205ENST00000597776 LMTK3Q96Q04 1460 aa17.24■□□□□ 0.35
LSM4-205ENST00000597776 CASKIN1Q8WXD9 1431 aa17.24■□□□□ 0.35
LSM4-205ENST00000597776 ATP10AO60312 1499 aa17.22■□□□□ 0.35
LSM4-205ENST00000597776 CCDC18Q5T9S5 1454 aa17.22■□□□□ 0.35
LSM4-205ENST00000597776 ZNF518AQ6AHZ1 1483 aa17.21■□□□□ 0.35
LSM4-205ENST00000597776 AFAP1Q8N556 730 aa17.21■□□□□ 0.35
LSM4-205ENST00000597776 C9orf84Q5VXU9 1444 aa17.21■□□□□ 0.34
LSM4-205ENST00000597776 CDC42BPBQ9Y5S2 1711 aa17.2■□□□□ 0.34
LSM4-205ENST00000597776 FER1L4A9Z1Z3 1794 aa17.2■□□□□ 0.34
LSM4-205ENST00000597776 KDM5CP41229 1560 aa17.19■□□□□ 0.34
LSM4-205ENST00000597776 PREX2Q70Z35 1606 aa17.19■□□□□ 0.34
LSM4-205ENST00000597776 FYCO1Q9BQS8 1478 aa17.18■□□□□ 0.34
LSM4-205ENST00000597776 ARHGEF12Q9NZN5 1544 aa17.17■□□□□ 0.34
LSM4-205ENST00000597776 HSPA2P54652 639 aa17.16■□□□□ 0.34
LSM4-205ENST00000597776 MYT1LQ9UL68 1186 aa17.16■□□□□ 0.34
LSM4-205ENST00000597776 ABCC1P33527 1531 aa17.16■□□□□ 0.34
LSM4-205ENST00000597776 DIP2CQ9Y2E4 1556 aa17.15■□□□□ 0.34
LSM4-205ENST00000597776 TRAPPC8Q9Y2L5 1435 aa17.14■□□□□ 0.33
LSM4-205ENST00000597776 ABCA6Q8N139 1617 aa17.14■□□□□ 0.33
LSM4-205ENST00000597776 CDC42BPAQ5VT25 1732 aa17.13■□□□□ 0.33
LSM4-205ENST00000597776 ITSN2Q9NZM3 1697 aa17.12■□□□□ 0.33
LSM4-205ENST00000597776 MLH3Q9UHC1 1453 aa17.11■□□□□ 0.33
LSM4-205ENST00000597776 CEBPAP49715 358 aaPredicted RBP17.1■□□□□ 0.33
LSM4-205ENST00000597776 REREQ9P2R6 1566 aa17.09■□□□□ 0.33
LSM4-205ENST00000597776 SAMD9LQ8IVG5 1584 aa17.07■□□□□ 0.32
LSM4-205ENST00000597776 FBXO41Q8TF61 875 aa17.07■□□□□ 0.32
LSM4-205ENST00000597776 ZNF777Q9ULD5 760 aaPredicted RBP17.07■□□□□ 0.32
LSM4-205ENST00000597776 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
LSM4-205ENST00000597776 KIDINS220Q9ULH0 1771 aa17.06■□□□□ 0.32
LSM4-205ENST00000597776 SYCP2Q9BX26 1530 aa17.06■□□□□ 0.32
LSM4-205ENST00000597776 PREX1Q8TCU6 1659 aa17.05■□□□□ 0.32
LSM4-205ENST00000597776 AGLP35573 1532 aa17.04■□□□□ 0.32
LSM4-205ENST00000597776 HNRNPMP52272 730 aaKnown RBP eCLIP17.02■□□□□ 0.32
LSM4-205ENST00000597776 MTUS2Q5JR59 1369 aa17.02■□□□□ 0.31
LSM4-205ENST00000597776 C3P01024 1663 aa17.01■□□□□ 0.31
LSM4-205ENST00000597776 CFDP1Q9UEE9 299 aaPredicted RBP17■□□□□ 0.31
LSM4-205ENST00000597776 CCNB3Q8WWL7 1395 aa17■□□□□ 0.31
LSM4-205ENST00000597776 SPAG9O60271 1321 aaKnown RBP16.99■□□□□ 0.31
LSM4-205ENST00000597776 UHRF1BP1Q6BDS2 1440 aa16.99■□□□□ 0.31
LSM4-205ENST00000597776 CEP162Q5TB80 1403 aa16.98■□□□□ 0.31
LSM4-205ENST00000597776 KIAA1107Q9UPP5 1409 aa16.97■□□□□ 0.31
LSM4-205ENST00000597776 ESF1Q9H501 851 aaKnown RBP16.97■□□□□ 0.31
LSM4-205ENST00000597776 ATP7AQ04656 1500 aa16.96■□□□□ 0.31
LSM4-205ENST00000597776 PLEKHH2Q8IVE3 1493 aa16.96■□□□□ 0.31
LSM4-205ENST00000597776 TIAM1Q13009 1591 aa16.96■□□□□ 0.31
LSM4-205ENST00000597776 INO80Q9ULG1 1556 aaPredicted RBP16.96■□□□□ 0.31
LSM4-205ENST00000597776 EHBP1L1Q8N3D4 1523 aa16.96■□□□□ 0.3
LSM4-205ENST00000597776 ZNF644Q9H582 1327 aaPredicted RBP16.95■□□□□ 0.3
LSM4-205ENST00000597776 SUPT6HQ7KZ85 1726 aaKnown RBP16.94■□□□□ 0.3
LSM4-205ENST00000597776 STRCQ7RTU9 1775 aa16.94■□□□□ 0.3
LSM4-205ENST00000597776 CNTLNQ9NXG0 1405 aa16.94■□□□□ 0.3
LSM4-205ENST00000597776 CERKQ8TCT0 537 aa16.92■□□□□ 0.3
LSM4-205ENST00000597776 PLXNC1O60486 1568 aa16.92■□□□□ 0.3
LSM4-205ENST00000597776 A2MP01023 1474 aa16.92■□□□□ 0.3
LSM4-205ENST00000597776 SETD1BQ9UPS6 1966 aaKnown RBP16.91■□□□□ 0.3
LSM4-205ENST00000597776 MROH2AA6NES4 1674 aa16.89■□□□□ 0.29
LSM4-205ENST00000597776 MBD5Q9P267 1494 aa16.89■□□□□ 0.29
LSM4-205ENST00000597776 ZMYM3Q14202 1370 aa16.88■□□□□ 0.29
LSM4-205ENST00000597776 CLTCQ00610 1675 aaKnown RBP16.88■□□□□ 0.29
LSM4-205ENST00000597776 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
LSM4-205ENST00000597776 NPATQ14207 1427 aa16.86■□□□□ 0.29
LSM4-205ENST00000597776 NCOA2Q15596 1464 aa16.86■□□□□ 0.29
LSM4-205ENST00000597776 ADGBQ8N7X0 1667 aa16.85■□□□□ 0.29
LSM4-205ENST00000597776 GGT6Q6P531 493 aa16.85■□□□□ 0.29
LSM4-205ENST00000597776 LOC105371045A0A1W2PR82 267 aa16.84■□□□□ 0.29
LSM4-205ENST00000597776 PTPRTO14522 1441 aa16.83■□□□□ 0.28
LSM4-205ENST00000597776 CAMSAP2Q08AD1 1489 aa16.83■□□□□ 0.28
LSM4-205ENST00000597776 NCOA1Q15788 1441 aa16.83■□□□□ 0.28
LSM4-205ENST00000597776 CAMSAP1Q5T5Y3 1602 aa16.81■□□□□ 0.28
LSM4-205ENST00000597776 RTEL1-TNFRSF6BF6WH68 1400 aa16.81■□□□□ 0.28
LSM4-205ENST00000597776 CCDC141Q6ZP82 1450 aa16.8■□□□□ 0.28
LSM4-205ENST00000597776 PTPRKQ15262 1439 aa16.8■□□□□ 0.28
LSM4-205ENST00000597776 MYO3AQ8NEV4 1616 aa16.8■□□□□ 0.28
LSM4-205ENST00000597776 VPS8Q8N3P4 1428 aa16.79■□□□□ 0.28
LSM4-205ENST00000597776 DHX29Q7Z478 1369 aaKnown RBP16.78■□□□□ 0.28
LSM4-205ENST00000597776 LRRC9Q6ZRR7 1453 aa16.77■□□□□ 0.28
LSM4-205ENST00000597776 ZNF142P52746 1687 aaPredicted RBP16.77■□□□□ 0.28
LSM4-205ENST00000597776 CEP170BQ9Y4F5 1589 aaPredicted RBP16.77■□□□□ 0.27
LSM4-205ENST00000597776 NCKAP5LQ9HCH0 1330 aa16.76■□□□□ 0.27
LSM4-205ENST00000597776 LTBP4Q8N2S1 1624 aa16.75■□□□□ 0.27
LSM4-205ENST00000597776 KIF3BO15066 747 aa16.75■□□□□ 0.27
LSM4-205ENST00000597776 PPP6R1Q9UPN7 881 aa16.75■□□□□ 0.27
LSM4-205ENST00000597776 ARHGEF5Q12774 1597 aa16.74■□□□□ 0.27
LSM4-205ENST00000597776 KANK4Q5T7N3 995 aaPredicted RBP16.72■□□□□ 0.27
LSM4-205ENST00000597776 RSPH4AQ5TD94 716 aa16.72■□□□□ 0.27
LSM4-205ENST00000597776 KDM5DQ9BY66 1539 aa16.71■□□□□ 0.27
LSM4-205ENST00000597776 PLA2R1Q13018 1463 aa16.71■□□□□ 0.27
LSM4-205ENST00000597776 TCOF1Q13428 1488 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms