RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TTC37Q6PGP7 1564 aa22.89■■□□□ 1.25
TRIM28-209ENST00000597423 ARHGAP5Q13017 1502 aa22.88■■□□□ 1.25
TRIM28-209ENST00000597423 FAM69CQ0P6D2 419 aa22.88■■□□□ 1.25
TRIM28-209ENST00000597423 ABCA9Q8IUA7 1624 aa22.88■■□□□ 1.25
TRIM28-209ENST00000597423 CD109Q6YHK3 1445 aa22.88■■□□□ 1.25
TRIM28-209ENST00000597423 ARAP3Q8WWN8 1544 aa22.87■■□□□ 1.25
TRIM28-209ENST00000597423 PLEKHH2Q8IVE3 1493 aa22.87■■□□□ 1.25
TRIM28-209ENST00000597423 CDC42BPAQ5VT25 1732 aa22.86■■□□□ 1.25
TRIM28-209ENST00000597423 PREX2Q70Z35 1606 aa22.85■■□□□ 1.25
TRIM28-209ENST00000597423 MYO5CQ9NQX4 1742 aa22.85■■□□□ 1.25
TRIM28-209ENST00000597423 CAMSAP2Q08AD1 1489 aa22.85■■□□□ 1.25
TRIM28-209ENST00000597423 TSPY4P0CV99 314 aa22.84■■□□□ 1.25
TRIM28-209ENST00000597423 TSPY10P0CW01 314 aa22.84■■□□□ 1.25
TRIM28-209ENST00000597423 GLI2P10070 1586 aa22.83■■□□□ 1.25
TRIM28-209ENST00000597423 KIAA1107Q9UPP5 1409 aa22.82■■□□□ 1.24
TRIM28-209ENST00000597423 HNRNPMP52272 730 aaKnown RBP eCLIP22.81■■□□□ 1.24
TRIM28-209ENST00000597423 CDC42BPBQ9Y5S2 1711 aa22.79■■□□□ 1.24
TRIM28-209ENST00000597423 FANCAO15360 1455 aa22.79■■□□□ 1.24
TRIM28-209ENST00000597423 ABCC5O15440 1437 aa22.77■■□□□ 1.24
TRIM28-209ENST00000597423 DAPK1P53355 1430 aa22.77■■□□□ 1.24
TRIM28-209ENST00000597423 CHIC2Q9UKJ5 165 aa22.75■■□□□ 1.23
TRIM28-209ENST00000597423 SAMD9LQ8IVG5 1584 aa22.73■■□□□ 1.23
TRIM28-209ENST00000597423 AKNAQ7Z591 1439 aa22.73■■□□□ 1.23
TRIM28-209ENST00000597423 DIP2BQ9P265 1576 aa22.72■■□□□ 1.23
TRIM28-209ENST00000597423 HRCP23327 699 aa22.72■■□□□ 1.23
TRIM28-209ENST00000597423 ROCK1Q13464 1354 aa22.72■■□□□ 1.23
TRIM28-209ENST00000597423 MBD5Q9P267 1494 aa22.72■■□□□ 1.23
TRIM28-209ENST00000597423 DNMT1P26358 1616 aaKnown RBP22.71■■□□□ 1.23
TRIM28-209ENST00000597423 ACIN1Q9UKV3 1341 aaKnown RBP22.71■■□□□ 1.23
TRIM28-209ENST00000597423 PTPRKQ15262 1439 aa22.71■■□□□ 1.23
TRIM28-209ENST00000597423 NEO1Q92859 1461 aa22.71■■□□□ 1.23
TRIM28-209ENST00000597423 ARHGEF5Q12774 1597 aa22.71■■□□□ 1.23
TRIM28-209ENST00000597423 SETD5Q9C0A6 1442 aa22.7■■□□□ 1.22
TRIM28-209ENST00000597423 CCDC141Q6ZP82 1450 aa22.7■■□□□ 1.22
TRIM28-209ENST00000597423 CFAP74Q9C0B2 1584 aa22.7■■□□□ 1.22
TRIM28-209ENST00000597423 ANKRD30AQ9BXX3 1397 aa22.69■■□□□ 1.22
TRIM28-209ENST00000597423 MAP3K4Q9Y6R4 1608 aa22.68■■□□□ 1.22
TRIM28-209ENST00000597423 TEX14Q8IWB6 1497 aa22.68■■□□□ 1.22
TRIM28-209ENST00000597423 SCAPERQ9BY12 1400 aa22.68■■□□□ 1.22
TRIM28-209ENST00000597423 ADGRL1O94910 1474 aa22.67■■□□□ 1.22
TRIM28-209ENST00000597423 RRP7BPQ9NSQ0 103 aa22.67■■□□□ 1.22
TRIM28-209ENST00000597423 SHANK2Q9UPX8 1470 aa22.66■■□□□ 1.22
TRIM28-209ENST00000597423 TRHP20396 242 aaPredicted RBP22.66■■□□□ 1.22
TRIM28-209ENST00000597423 ABCC1P33527 1531 aa22.66■■□□□ 1.22
TRIM28-209ENST00000597423 SYCP2Q9BX26 1530 aa22.66■■□□□ 1.22
TRIM28-209ENST00000597423 HFM1A2PYH4 1435 aa22.65■■□□□ 1.22
TRIM28-209ENST00000597423 C9orf84Q5VXU9 1444 aa22.65■■□□□ 1.22
TRIM28-209ENST00000597423 SPAG9O60271 1321 aaKnown RBP22.64■■□□□ 1.22
TRIM28-209ENST00000597423 AFAP1Q8N556 730 aa22.63■■□□□ 1.21
TRIM28-209ENST00000597423 ARHGEF12Q9NZN5 1544 aa22.62■■□□□ 1.21
TRIM28-209ENST00000597423 MYT1LQ9UL68 1186 aa22.62■■□□□ 1.21
TRIM28-209ENST00000597423 NCOA1Q15788 1441 aa22.62■■□□□ 1.21
TRIM28-209ENST00000597423 ADGRL2O95490 1459 aa22.6■■□□□ 1.21
TRIM28-209ENST00000597423 TRAPPC8Q9Y2L5 1435 aa22.6■■□□□ 1.21
TRIM28-209ENST00000597423 RAB3GAP2Q9H2M9 1393 aa22.6■■□□□ 1.21
TRIM28-209ENST00000597423 NAIPQ13075 1403 aa22.59■■□□□ 1.21
TRIM28-209ENST00000597423 RTEL1-TNFRSF6BF6WH68 1400 aa22.58■■□□□ 1.21
TRIM28-209ENST00000597423 DENND4BO75064 1496 aaPredicted RBP22.58■■□□□ 1.2
TRIM28-209ENST00000597423 ZNF518AQ6AHZ1 1483 aa22.57■■□□□ 1.2
TRIM28-209ENST00000597423 MAST1Q9Y2H9 1570 aa22.55■■□□□ 1.2
TRIM28-209ENST00000597423 CCER1Q8TC90 406 aaPredicted RBP22.55■■□□□ 1.2
TRIM28-209ENST00000597423 CROCC2H7BZ55 1655 aa22.54■■□□□ 1.2
TRIM28-209ENST00000597423 KIF15Q9NS87 1388 aa22.53■■□□□ 1.2
TRIM28-209ENST00000597423 POGZQ7Z3K3 1410 aa22.53■■□□□ 1.2
TRIM28-209ENST00000597423 KIF13AQ9H1H9 1805 aa22.52■■□□□ 1.2
TRIM28-209ENST00000597423 ADGBQ8N7X0 1667 aa22.52■■□□□ 1.2
TRIM28-209ENST00000597423 RAPGEF3O95398 923 aa22.51■■□□□ 1.19
TRIM28-209ENST00000597423 ANKRD50Q9ULJ7 1429 aa22.49■■□□□ 1.19
TRIM28-209ENST00000597423 TSPOAP1O95153 1857 aa22.48■■□□□ 1.19
TRIM28-209ENST00000597423 TRIM52Q96A61 297 aa22.48■■□□□ 1.19
TRIM28-209ENST00000597423 MLH3Q9UHC1 1453 aa22.47■■□□□ 1.19
TRIM28-209ENST00000597423 GCC2Q8IWJ2 1684 aa22.45■■□□□ 1.18
TRIM28-209ENST00000597423 PLXNC1O60486 1568 aa22.44■■□□□ 1.18
TRIM28-209ENST00000597423 PPRC1Q5VV67 1664 aaKnown RBP22.44■■□□□ 1.18
TRIM28-209ENST00000597423 ATP7AQ04656 1500 aa22.43■■□□□ 1.18
TRIM28-209ENST00000597423 DUOX2Q9NRD8 1548 aa22.43■■□□□ 1.18
TRIM28-209ENST00000597423 KDM5CP41229 1560 aa22.42■■□□□ 1.18
TRIM28-209ENST00000597423 ZFYVE16Q7Z3T8 1539 aa22.41■■□□□ 1.18
TRIM28-209ENST00000597423 MAGI2Q86UL8 1455 aa22.41■■□□□ 1.18
TRIM28-209ENST00000597423 DHX29Q7Z478 1369 aaKnown RBP22.4■■□□□ 1.18
TRIM28-209ENST00000597423 CLSPNQ9HAW4 1339 aa22.4■■□□□ 1.18
TRIM28-209ENST00000597423 ZEB1P37275 1124 aaPredicted RBP22.4■■□□□ 1.18
TRIM28-209ENST00000597423 ERBINQ96RT1 1412 aa22.4■■□□□ 1.18
TRIM28-209ENST00000597423 INO80Q9ULG1 1556 aaPredicted RBP22.38■■□□□ 1.17
TRIM28-209ENST00000597423 DHX57Q6P158 1386 aaKnown RBP22.38■■□□□ 1.17
TRIM28-209ENST00000597423 HECW2Q9P2P5 1572 aa22.36■■□□□ 1.17
TRIM28-209ENST00000597423 MPHOSPH9Q99550 1183 aa22.34■■□□□ 1.17
TRIM28-209ENST00000597423 RICTORQ6R327 1708 aa22.34■■□□□ 1.17
TRIM28-209ENST00000597423 A2MP01023 1474 aa22.34■■□□□ 1.17
TRIM28-209ENST00000597423 NUP155O75694 1391 aa22.33■■□□□ 1.17
TRIM28-209ENST00000597423 ZMYM4Q5VZL5 1548 aa22.32■■□□□ 1.16
TRIM28-209ENST00000597423 KIF3BO15066 747 aa22.32■■□□□ 1.16
TRIM28-209ENST00000597423 SLC4A1APQ9BWU0 796 aaKnown RBP22.32■■□□□ 1.16
TRIM28-209ENST00000597423 KIDINS220Q9ULH0 1771 aa22.32■■□□□ 1.16
TRIM28-209ENST00000597423 KDM6BO15054 1643 aa22.31■■□□□ 1.16
TRIM28-209ENST00000597423 COL17A1Q9UMD9 1497 aaPredicted RBP22.3■■□□□ 1.16
TRIM28-209ENST00000597423 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.3■■□□□ 1.168e-9■■■□□ 15.8
TRIM28-209ENST00000597423 KANK1Q14678 1352 aa22.28■■□□□ 1.16
TRIM28-209ENST00000597423 ATP10AO60312 1499 aa22.28■■□□□ 1.16
TRIM28-209ENST00000597423 FRMPD1Q5SYB0 1578 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms