RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 RICTORQ6R327 1708 aa24.35■■□□□ 1.49
TRIM28-205ENST00000595028 PLCH2O75038 1416 aa24.35■■□□□ 1.49
TRIM28-205ENST00000595028 AKNAQ7Z591 1439 aa24.35■■□□□ 1.49
TRIM28-205ENST00000595028 ARID4BQ4LE39 1312 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-205ENST00000595028 DENND4BO75064 1496 aaPredicted RBP24.31■■□□□ 1.48
TRIM28-205ENST00000595028 RIMS1Q86UR5 1692 aaKnown RBP24.3■■□□□ 1.48
TRIM28-205ENST00000595028 HSPA2P54652 639 aa24.29■■□□□ 1.48
TRIM28-205ENST00000595028 PREX2Q70Z35 1606 aa24.28■■□□□ 1.48
TRIM28-205ENST00000595028 CERKQ8TCT0 537 aa24.27■■□□□ 1.48
TRIM28-205ENST00000595028 ARHGAP5Q13017 1502 aa24.26■■□□□ 1.47
TRIM28-205ENST00000595028 ZMYM4Q5VZL5 1548 aa24.26■■□□□ 1.47
TRIM28-205ENST00000595028 ARHGEF40Q8TER5 1519 aa24.26■■□□□ 1.47
TRIM28-205ENST00000595028 LOC105371045A0A1W2PR82 267 aa24.26■■□□□ 1.47
TRIM28-205ENST00000595028 CDC42BPBQ9Y5S2 1711 aa24.26■■□□□ 1.47
TRIM28-205ENST00000595028 ILDR2Q71H61 639 aa24.24■■□□□ 1.47
TRIM28-205ENST00000595028 CDC42BPAQ5VT25 1732 aa24.24■■□□□ 1.47
TRIM28-205ENST00000595028 POGZQ7Z3K3 1410 aa24.23■■□□□ 1.47
TRIM28-205ENST00000595028 SCAPERQ9BY12 1400 aa24.2■■□□□ 1.46
TRIM28-205ENST00000595028 DISP3Q9P2K9 1392 aa24.2■■□□□ 1.46
TRIM28-205ENST00000595028 SOCS7O14512 581 aa24.2■■□□□ 1.46
TRIM28-205ENST00000595028 EFCAB2Q5VUJ9 269 aa24.2■■□□□ 1.46
TRIM28-205ENST00000595028 PLPPR3Q6T4P5 718 aa24.19■■□□□ 1.46
TRIM28-205ENST00000595028 EHBP1L1Q8N3D4 1523 aa24.18■■□□□ 1.46
TRIM28-205ENST00000595028 ZFYVE16Q7Z3T8 1539 aa24.17■■□□□ 1.46
TRIM28-205ENST00000595028 VPS8Q8N3P4 1428 aa24.16■■□□□ 1.46
TRIM28-205ENST00000595028 ABCC1P33527 1531 aa24.15■■□□□ 1.46
TRIM28-205ENST00000595028 MAGI2Q86UL8 1455 aa24.15■■□□□ 1.46
TRIM28-205ENST00000595028 MTUS2Q5JR59 1369 aa24.15■■□□□ 1.46
TRIM28-205ENST00000595028 KDM5CP41229 1560 aa24.13■■□□□ 1.45
TRIM28-205ENST00000595028 ITSN2Q9NZM3 1697 aa24.13■■□□□ 1.45
TRIM28-205ENST00000595028 ZNF518AQ6AHZ1 1483 aa24.13■■□□□ 1.45
TRIM28-205ENST00000595028 TIAM1Q13009 1591 aa24.12■■□□□ 1.45
TRIM28-205ENST00000595028 YEATS2Q9ULM3 1422 aa24.11■■□□□ 1.45
TRIM28-205ENST00000595028 GPATCH8Q9UKJ3 1502 aaKnown RBP24.11■■□□□ 1.45
TRIM28-205ENST00000595028 SIGLEC1Q9BZZ2 1709 aa24.09■■□□□ 1.45
TRIM28-205ENST00000595028 SAMD9LQ8IVG5 1584 aa24.08■■□□□ 1.45
TRIM28-205ENST00000595028 ARHGEF12Q9NZN5 1544 aa24.07■■□□□ 1.44
TRIM28-205ENST00000595028 CCNB3Q8WWL7 1395 aa24.04■■□□□ 1.44
TRIM28-205ENST00000595028 SUPT6HQ7KZ85 1726 aaKnown RBP24.04■■□□□ 1.44
TRIM28-205ENST00000595028 FER1L4A9Z1Z3 1794 aa24.03■■□□□ 1.44
TRIM28-205ENST00000595028 SYCP2Q9BX26 1530 aa24.02■■□□□ 1.44
TRIM28-205ENST00000595028 TRAPPC8Q9Y2L5 1435 aa24.01■■□□□ 1.43
TRIM28-205ENST00000595028 DIP2CQ9Y2E4 1556 aa24■■□□□ 1.43
TRIM28-205ENST00000595028 MLECQ14165 292 aa24■■□□□ 1.43
TRIM28-205ENST00000595028 C9orf84Q5VXU9 1444 aa24■■□□□ 1.43
TRIM28-205ENST00000595028 MAP3K1Q13233 1512 aa24■■□□□ 1.43
TRIM28-205ENST00000595028 ABCA6Q8N139 1617 aa23.99■■□□□ 1.43
TRIM28-205ENST00000595028 AFAP1Q8N556 730 aa23.99■■□□□ 1.43
TRIM28-205ENST00000595028 ATP10AO60312 1499 aa23.99■■□□□ 1.43
TRIM28-205ENST00000595028 NCOA2Q15596 1464 aa23.99■■□□□ 1.43
TRIM28-205ENST00000595028 PLEKHH2Q8IVE3 1493 aa23.99■■□□□ 1.43
TRIM28-205ENST00000595028 MLH3Q9UHC1 1453 aa23.99■■□□□ 1.43
TRIM28-205ENST00000595028 SPATA31D1Q6ZQQ2 1576 aa23.99■■□□□ 1.43
TRIM28-205ENST00000595028 LRRC9Q6ZRR7 1453 aa23.97■■□□□ 1.43
TRIM28-205ENST00000595028 PREX1Q8TCU6 1659 aa23.97■■□□□ 1.43
TRIM28-205ENST00000595028 CFDP1Q9UEE9 299 aaPredicted RBP23.96■■□□□ 1.43
TRIM28-205ENST00000595028 ZNF777Q9ULD5 760 aaPredicted RBP23.96■■□□□ 1.43
TRIM28-205ENST00000595028 KIDINS220Q9ULH0 1771 aa23.96■■□□□ 1.43
TRIM28-205ENST00000595028 REREQ9P2R6 1566 aa23.95■■□□□ 1.43
TRIM28-205ENST00000595028 KIAA1107Q9UPP5 1409 aa23.95■■□□□ 1.42
TRIM28-205ENST00000595028 STRCQ7RTU9 1775 aa23.94■■□□□ 1.42
TRIM28-205ENST00000595028 INO80Q9ULG1 1556 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-205ENST00000595028 DMRT2Q9Y5R5 561 aa23.9■■□□□ 1.42
TRIM28-205ENST00000595028 CEBPAP49715 358 aaPredicted RBP23.87■■□□□ 1.41
TRIM28-205ENST00000595028 MYT1LQ9UL68 1186 aa23.87■■□□□ 1.41
TRIM28-205ENST00000595028 ATP7AQ04656 1500 aa23.87■■□□□ 1.41
TRIM28-205ENST00000595028 HNRNPMP52272 730 aaKnown RBP eCLIP23.86■■□□□ 1.41
TRIM28-205ENST00000595028 CAMSAP2Q08AD1 1489 aa23.85■■□□□ 1.41
TRIM28-205ENST00000595028 AGLP35573 1532 aa23.84■■□□□ 1.41
TRIM28-205ENST00000595028 MBD5Q9P267 1494 aa23.84■■□□□ 1.41
TRIM28-205ENST00000595028 ZNF644Q9H582 1327 aaPredicted RBP23.84■■□□□ 1.41
TRIM28-205ENST00000595028 KANK4Q5T7N3 995 aaPredicted RBP23.83■■□□□ 1.41
TRIM28-205ENST00000595028 SPAG9O60271 1321 aaKnown RBP23.83■■□□□ 1.4
TRIM28-205ENST00000595028 UHRF1BP1Q6BDS2 1440 aa23.81■■□□□ 1.4
TRIM28-205ENST00000595028 PLXNC1O60486 1568 aa23.79■■□□□ 1.4
TRIM28-205ENST00000595028 CCDC141Q6ZP82 1450 aa23.79■■□□□ 1.4
TRIM28-205ENST00000595028 SETD1BQ9UPS6 1966 aaKnown RBP23.78■■□□□ 1.4
TRIM28-205ENST00000595028 ARHGEF5Q12774 1597 aa23.78■■□□□ 1.4
TRIM28-205ENST00000595028 ADGBQ8N7X0 1667 aa23.77■■□□□ 1.4
TRIM28-205ENST00000595028 PTPRTO14522 1441 aa23.76■■□□□ 1.39
TRIM28-205ENST00000595028 MYOM3Q5VTT5 1437 aa23.76■■□□□ 1.39
TRIM28-205ENST00000595028 APLP2Q06481 763 aa23.76■■□□□ 1.39
TRIM28-205ENST00000595028 LTBP4Q8N2S1 1624 aa23.74■■□□□ 1.39
TRIM28-205ENST00000595028 RTEL1-TNFRSF6BF6WH68 1400 aa23.73■■□□□ 1.39
TRIM28-205ENST00000595028 MIA2Q96PC5 1412 aa23.73■■□□□ 1.39
TRIM28-205ENST00000595028 A2MP01023 1474 aa23.72■■□□□ 1.39
TRIM28-205ENST00000595028 IQSEC2Q5JU85 1478 aa23.7■■□□□ 1.38
TRIM28-205ENST00000595028 C3P01024 1663 aa23.67■■□□□ 1.38
TRIM28-205ENST00000595028 MAST1Q9Y2H9 1570 aa23.66■■□□□ 1.38
TRIM28-205ENST00000595028 RSPH4AQ5TD94 716 aa23.66■■□□□ 1.38
TRIM28-205ENST00000595028 PTPN23Q9H3S7 1636 aa23.65■■□□□ 1.38
TRIM28-205ENST00000595028 MROH2AA6NES4 1674 aa23.63■■□□□ 1.37
TRIM28-205ENST00000595028 CNTLNQ9NXG0 1405 aa23.62■■□□□ 1.37
TRIM28-205ENST00000595028 CROCC2H7BZ55 1655 aa23.61■■□□□ 1.37
TRIM28-205ENST00000595028 NCOA1Q15788 1441 aa23.6■■□□□ 1.37
TRIM28-205ENST00000595028 FGD6Q6ZV73 1430 aa23.6■■□□□ 1.37
TRIM28-205ENST00000595028 CLTCQ00610 1675 aaKnown RBP23.58■■□□□ 1.37
TRIM28-205ENST00000595028 TCOF1Q13428 1488 aaKnown RBP23.58■■□□□ 1.37
TRIM28-205ENST00000595028 DHX29Q7Z478 1369 aaKnown RBP23.58■■□□□ 1.37
TRIM28-205ENST00000595028 ESF1Q9H501 851 aaKnown RBP23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms