RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 ADGBQ8N7X0 1667 aa18.31■□□□□ 0.52
VRK3-209ENST00000594948 ANKRD30BQ9BXX2 1392 aa18.31■□□□□ 0.52
VRK3-209ENST00000594948 FANCIQ9NVI1 1328 aa18.3■□□□□ 0.52
VRK3-209ENST00000594948 KIAA0556O60303 1618 aa18.28■□□□□ 0.52
VRK3-209ENST00000594948 ITSN2Q9NZM3 1697 aa18.27■□□□□ 0.52
VRK3-209ENST00000594948 L3MBTL2Q969R5 705 aa18.27■□□□□ 0.52
VRK3-209ENST00000594948 CHIC2Q9UKJ5 165 aa18.27■□□□□ 0.52
VRK3-209ENST00000594948 SPATA31E1Q6ZUB1 1445 aa18.27■□□□□ 0.51
VRK3-209ENST00000594948 CDK11AQ9UQ88 783 aaPredicted RBP18.26■□□□□ 0.51
VRK3-209ENST00000594948 RAPGEF6Q8TEU7 1601 aa18.26■□□□□ 0.51
VRK3-209ENST00000594948 PRKRIP1Q9H875 184 aaPredicted RBP18.26■□□□□ 0.51
VRK3-209ENST00000594948 ABCC5O15440 1437 aa18.25■□□□□ 0.51
VRK3-209ENST00000594948 ZBED9Q6R2W3 1325 aa18.25■□□□□ 0.51
VRK3-209ENST00000594948 PPP4R2Q9NY27 417 aa18.24■□□□□ 0.51
VRK3-209ENST00000594948 CROCC2H7BZ55 1655 aa18.24■□□□□ 0.51
VRK3-209ENST00000594948 ADCY10Q96PN6 1610 aa18.23■□□□□ 0.51
VRK3-209ENST00000594948 KIAA0586Q9BVV6 1533 aa18.21■□□□□ 0.51
VRK3-209ENST00000594948 MBD5Q9P267 1494 aa18.21■□□□□ 0.51
VRK3-209ENST00000594948 MRC2Q9UBG0 1479 aa18.21■□□□□ 0.51
VRK3-209ENST00000594948 KIF14Q15058 1648 aa18.2■□□□□ 0.5
VRK3-209ENST00000594948 DISP1Q96F81 1524 aa18.19■□□□□ 0.5
VRK3-209ENST00000594948 NUP153P49790 1475 aaKnown RBP18.19■□□□□ 0.5
VRK3-209ENST00000594948 ADGRL2O95490 1459 aa18.18■□□□□ 0.5
VRK3-209ENST00000594948 C11orf95C9JLR9 678 aaPredicted RBP18.18■□□□□ 0.5
VRK3-209ENST00000594948 PZPP20742 1482 aa18.18■□□□□ 0.5
VRK3-209ENST00000594948 NBPF8Q3BBV2 869 aa18.16■□□□□ 0.5
VRK3-209ENST00000594948 IFT140Q96RY7 1462 aa18.16■□□□□ 0.5
VRK3-209ENST00000594948 KIF7Q2M1P5 1343 aa18.16■□□□□ 0.5
VRK3-209ENST00000594948 CCDC184Q52MB2 194 aa18.15■□□□□ 0.5
VRK3-209ENST00000594948 MRS2Q9HD23 443 aa18.15■□□□□ 0.5
VRK3-209ENST00000594948 MSH5O43196 834 aa18.14■□□□□ 0.5
VRK3-209ENST00000594948 ARID4BQ4LE39 1312 aaPredicted RBP18.14■□□□□ 0.49
VRK3-209ENST00000594948 CAMSAP2Q08AD1 1489 aa18.14■□□□□ 0.49
VRK3-209ENST00000594948 KDM5CP41229 1560 aa18.13■□□□□ 0.49
VRK3-209ENST00000594948 TROQ12816 1431 aaPredicted RBP18.13■□□□□ 0.49
VRK3-209ENST00000594948 SMG6Q86US8 1419 aaKnown RBP18.12■□□□□ 0.49
VRK3-209ENST00000594948 BCORL1Q5H9F3 1711 aa18.12■□□□□ 0.49
VRK3-209ENST00000594948 KIAA1107Q9UPP5 1409 aa18.12■□□□□ 0.49
VRK3-209ENST00000594948 IRX6P78412 446 aaPredicted RBP18.1■□□□□ 0.49
VRK3-209ENST00000594948 FOXD1Q16676 465 aa18.1■□□□□ 0.49
VRK3-209ENST00000594948 SLC4A1APQ9BWU0 796 aaKnown RBP18.1■□□□□ 0.49
VRK3-209ENST00000594948 DHX29Q7Z478 1369 aaKnown RBP18.09■□□□□ 0.49
VRK3-209ENST00000594948 GRIN2AQ12879 1464 aa18.09■□□□□ 0.49
VRK3-209ENST00000594948 FAM9BQ8IZU0 186 aa18.08■□□□□ 0.48
VRK3-209ENST00000594948 UHRF1BP1Q6BDS2 1440 aa18.08■□□□□ 0.48
VRK3-209ENST00000594948 ARHGEF12Q9NZN5 1544 aa18.07■□□□□ 0.48
VRK3-209ENST00000594948 GPATCH8Q9UKJ3 1502 aaKnown RBP18.06■□□□□ 0.48
VRK3-209ENST00000594948 ROCK2O75116 1388 aaKnown RBP18.05■□□□□ 0.48
VRK3-209ENST00000594948 KDM5DQ9BY66 1539 aa18.05■□□□□ 0.48
VRK3-209ENST00000594948 MYT1LQ9UL68 1186 aa18.05■□□□□ 0.48
VRK3-209ENST00000594948 RALGAPBQ86X10 1494 aa18.05■□□□□ 0.48
VRK3-209ENST00000594948 SHANK2Q9UPX8 1470 aa18.04■□□□□ 0.48
VRK3-209ENST00000594948 RNF123Q5XPI4 1314 aa18.04■□□□□ 0.48
VRK3-209ENST00000594948 EIF4G3O43432 1585 aaKnown RBP18.04■□□□□ 0.48
VRK3-209ENST00000594948 CDC42BPAQ5VT25 1732 aa18.03■□□□□ 0.48
VRK3-209ENST00000594948 ZNF644Q9H582 1327 aaPredicted RBP18.03■□□□□ 0.48
VRK3-209ENST00000594948 USP47Q96K76 1375 aa18.03■□□□□ 0.48
VRK3-209ENST00000594948 ZNF608Q9ULD9 1512 aaPredicted RBP18.03■□□□□ 0.48
VRK3-209ENST00000594948 ERICH6Q7L0X2 663 aa18.02■□□□□ 0.48
VRK3-209ENST00000594948 BCL11AQ9H165 835 aa18.02■□□□□ 0.48
VRK3-209ENST00000594948 E9PCH4 1651 aa18.02■□□□□ 0.47
VRK3-209ENST00000594948 ANKRD30AQ9BXX3 1397 aa18.02■□□□□ 0.47
VRK3-209ENST00000594948 PRG4Q92954 1404 aaPredicted RBP18■□□□□ 0.47
VRK3-209ENST00000594948 NUDCQ9Y266 331 aa18■□□□□ 0.47
VRK3-209ENST00000594948 MAGI1Q96QZ7 1491 aaPredicted RBP18■□□□□ 0.47
VRK3-209ENST00000594948 KTN1Q86UP2 1357 aaKnown RBP17.99■□□□□ 0.47
VRK3-209ENST00000594948 CFDP1Q9UEE9 299 aaPredicted RBP17.98■□□□□ 0.47
VRK3-209ENST00000594948 CEP170Q5SW79 1584 aa17.98■□□□□ 0.47
VRK3-209ENST00000594948 ARID3CA6NKF2 412 aa17.96■□□□□ 0.47
VRK3-209ENST00000594948 B4GALNT3Q6L9W6 998 aa17.96■□□□□ 0.47
VRK3-209ENST00000594948 ANKRD50Q9ULJ7 1429 aa17.96■□□□□ 0.47
VRK3-209ENST00000594948 ARHGEF5Q12774 1597 aa17.95■□□□□ 0.46
VRK3-209ENST00000594948 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
VRK3-209ENST00000594948 ABCC10Q5T3U5 1492 aa17.93■□□□□ 0.46
VRK3-209ENST00000594948 ABCA8O94911 1581 aa17.93■□□□□ 0.46
VRK3-209ENST00000594948 KIF15Q9NS87 1388 aa17.93■□□□□ 0.46
VRK3-209ENST00000594948 SYNJ2O15056 1496 aa17.92■□□□□ 0.46
VRK3-209ENST00000594948 PLB1Q6P1J6 1458 aa17.92■□□□□ 0.46
VRK3-209ENST00000594948 PTPRGP23470 1445 aa17.92■□□□□ 0.46
VRK3-209ENST00000594948 CARMIL2Q6F5E8 1435 aa17.92■□□□□ 0.46
VRK3-209ENST00000594948 PKD2Q13563 968 aa17.92■□□□□ 0.46
VRK3-209ENST00000594948 LRPPRCP42704 1394 aaKnown RBP17.92■□□□□ 0.46
VRK3-209ENST00000594948 BRD4O60885 1362 aaPredicted RBP17.9■□□□□ 0.46
VRK3-209ENST00000594948 PNISRQ8TF01 805 aaKnown RBP17.9■□□□□ 0.46
VRK3-209ENST00000594948 C9orf84Q5VXU9 1444 aa17.89■□□□□ 0.45
VRK3-209ENST00000594948 LAMC1P11047 1609 aa17.89■□□□□ 0.45
VRK3-209ENST00000594948 NUP160Q12769 1436 aa17.88■□□□□ 0.45
VRK3-209ENST00000594948 TRPM1Q7Z4N2 1603 aa17.87■□□□□ 0.45
VRK3-209ENST00000594948 RALBP1Q15311 655 aa17.86■□□□□ 0.45
VRK3-209ENST00000594948 MYBBP1AQ9BQG0 1328 aaKnown RBP17.84■□□□□ 0.45
VRK3-209ENST00000594948 NUP155O75694 1391 aa17.84■□□□□ 0.45
VRK3-209ENST00000594948 ZMYM4Q5VZL5 1548 aa17.84■□□□□ 0.45
VRK3-209ENST00000594948 CCDC136Q96JN2 1154 aa17.83■□□□□ 0.44
VRK3-209ENST00000594948 NOP58Q9Y2X3 529 aaKnown RBP17.83■□□□□ 0.44
VRK3-209ENST00000594948 TMC1Q8TDI8 760 aa17.82■□□□□ 0.44
VRK3-209ENST00000594948 CARD11Q9BXL7 1154 aa17.82■□□□□ 0.44
VRK3-209ENST00000594948 INSRP06213 1382 aa17.82■□□□□ 0.44
VRK3-209ENST00000594948 PREX2Q70Z35 1606 aa17.82■□□□□ 0.44
VRK3-209ENST00000594948 UNC13BO14795 1591 aa17.8■□□□□ 0.44
VRK3-209ENST00000594948 MAST1Q9Y2H9 1570 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms