RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 LRRC9Q6ZRR7 1453 aa40.49■■■■■ 4.07
TRIM28-204ENST00000594806 CDC42BPAQ5VT25 1732 aa40.48■■■■■ 4.07
TRIM28-204ENST00000594806 SUPT6HQ7KZ85 1726 aaKnown RBP40.45■■■■■ 4.07
TRIM28-204ENST00000594806 CCNB3Q8WWL7 1395 aa40.45■■■■■ 4.07
TRIM28-204ENST00000594806 GPATCH8Q9UKJ3 1502 aaKnown RBP40.43■■■■■ 4.06
TRIM28-204ENST00000594806 DENND4BO75064 1496 aaPredicted RBP40.42■■■■■ 4.06
TRIM28-204ENST00000594806 ADGRL1O94910 1474 aa40.41■■■■■ 4.06
TRIM28-204ENST00000594806 NCOA2Q15596 1464 aa40.37■■■■■ 4.05
TRIM28-204ENST00000594806 SCAPERQ9BY12 1400 aa40.35■■■■■ 4.05
TRIM28-204ENST00000594806 RAPGEF3O95398 923 aa40.35■■■■■ 4.05
TRIM28-204ENST00000594806 KANK4Q5T7N3 995 aaPredicted RBP40.35■■■■■ 4.05
TRIM28-204ENST00000594806 ITSN2Q9NZM3 1697 aa40.34■■■■■ 4.05
TRIM28-204ENST00000594806 CFDP1Q9UEE9 299 aaPredicted RBP40.32■■■■■ 4.05
TRIM28-204ENST00000594806 RICTORQ6R327 1708 aa40.32■■■■■ 4.05
TRIM28-204ENST00000594806 FRMPD1Q5SYB0 1578 aa40.29■■■■■ 4.04
TRIM28-204ENST00000594806 POGZQ7Z3K3 1410 aa40.26■■■■■ 4.04
TRIM28-204ENST00000594806 ABCC1P33527 1531 aa40.24■■■■■ 4.03
TRIM28-204ENST00000594806 PLEKHH2Q8IVE3 1493 aa40.23■■■■■ 4.03
TRIM28-204ENST00000594806 ZMYM4Q5VZL5 1548 aa40.21■■■■■ 4.03
TRIM28-204ENST00000594806 ZNF518AQ6AHZ1 1483 aa40.21■■■■■ 4.03
TRIM28-204ENST00000594806 ZNF777Q9ULD5 760 aaPredicted RBP40.21■■■■■ 4.03
TRIM28-204ENST00000594806 SAMD9LQ8IVG5 1584 aa40.2■■■■■ 4.03
TRIM28-204ENST00000594806 KIAA1107Q9UPP5 1409 aa40.18■■■■■ 4.02
TRIM28-204ENST00000594806 MAGI2Q86UL8 1455 aa40.18■■■■■ 4.02
TRIM28-204ENST00000594806 ARHGEF12Q9NZN5 1544 aa40.12■■■■■ 4.01
TRIM28-204ENST00000594806 KDM5CP41229 1560 aa40.11■■■■■ 4.01
TRIM28-204ENST00000594806 AFAP1Q8N556 730 aa40.09■■■■■ 4.01
TRIM28-204ENST00000594806 MYOM3Q5VTT5 1437 aa40.08■■■■■ 4.01
TRIM28-204ENST00000594806 MIA2Q96PC5 1412 aa40.08■■■■■ 4.01
TRIM28-204ENST00000594806 SYCP2Q9BX26 1530 aa40.07■■■■■ 4.01
TRIM28-204ENST00000594806 TRAPPC8Q9Y2L5 1435 aa40.07■■■■■ 4
TRIM28-204ENST00000594806 ZFYVE16Q7Z3T8 1539 aa40.05■■■■■ 4
TRIM28-204ENST00000594806 ARHGEF40Q8TER5 1519 aa40.05■■■■■ 4
TRIM28-204ENST00000594806 HNRNPMP52272 730 aaKnown RBP eCLIP40.03■■■■■ 43e-7■■■□□ 14.9
TRIM28-204ENST00000594806 MLH3Q9UHC1 1453 aa40.01■■■■■ 4
TRIM28-204ENST00000594806 ZNF644Q9H582 1327 aaPredicted RBP40.01■■■■■ 4
TRIM28-204ENST00000594806 HECW2Q9P2P5 1572 aa40■■■■□ 3.99
TRIM28-204ENST00000594806 CAMSAP2Q08AD1 1489 aa40■■■■□ 3.99
TRIM28-204ENST00000594806 RSPH4AQ5TD94 716 aa39.99■■■■□ 3.99
TRIM28-204ENST00000594806 MBD5Q9P267 1494 aa39.96■■■■□ 3.99
TRIM28-204ENST00000594806 YEATS2Q9ULM3 1422 aa39.96■■■■□ 3.99
TRIM28-204ENST00000594806 MYT1LQ9UL68 1186 aa39.93■■■■□ 3.98
TRIM28-204ENST00000594806 ATP10AO60312 1499 aa39.91■■■■□ 3.98
TRIM28-204ENST00000594806 SPAG9O60271 1321 aaKnown RBP39.9■■■■□ 3.98
TRIM28-204ENST00000594806 ARHGEF5Q12774 1597 aa39.88■■■■□ 3.97
TRIM28-204ENST00000594806 KIDINS220Q9ULH0 1771 aa39.87■■■■□ 3.97
TRIM28-204ENST00000594806 FGD6Q6ZV73 1430 aa39.86■■■■□ 3.97
TRIM28-204ENST00000594806 CCDC141Q6ZP82 1450 aa39.86■■■■□ 3.97
TRIM28-204ENST00000594806 C9orf84Q5VXU9 1444 aa39.85■■■■□ 3.97
TRIM28-204ENST00000594806 DIP2CQ9Y2E4 1556 aa39.82■■■■□ 3.97
TRIM28-204ENST00000594806 PTPN23Q9H3S7 1636 aa39.82■■■■□ 3.96
TRIM28-204ENST00000594806 RTEL1-TNFRSF6BF6WH68 1400 aa39.81■■■■□ 3.96
TRIM28-204ENST00000594806 ATP7AQ04656 1500 aa39.81■■■■□ 3.96
TRIM28-204ENST00000594806 INO80Q9ULG1 1556 aaPredicted RBP39.8■■■■□ 3.96
TRIM28-204ENST00000594806 REREQ9P2R6 1566 aa39.8■■■■□ 3.96
TRIM28-204ENST00000594806 ABCA6Q8N139 1617 aa39.79■■■■□ 3.96
TRIM28-204ENST00000594806 KDM4FA0A1W2PPD8 638 aa39.78■■■■□ 3.96
TRIM28-204ENST00000594806 TCOF1Q13428 1488 aaKnown RBP39.78■■■■□ 3.96
TRIM28-204ENST00000594806 ARID4BQ4LE39 1312 aaPredicted RBP39.78■■■■□ 3.96
TRIM28-204ENST00000594806 TSPY4P0CV99 314 aa39.76■■■■□ 3.96
TRIM28-204ENST00000594806 TSPY10P0CW01 314 aa39.76■■■■□ 3.96
TRIM28-204ENST00000594806 BCORL1Q5H9F3 1711 aa39.69■■■■□ 3.94
TRIM28-204ENST00000594806 AGLP35573 1532 aa39.66■■■■□ 3.94
TRIM28-204ENST00000594806 SIGLEC1Q9BZZ2 1709 aa39.66■■■■□ 3.94
TRIM28-204ENST00000594806 PPARGC1BQ86YN6 1023 aaKnown RBP39.66■■■■□ 3.94
TRIM28-204ENST00000594806 MAST1Q9Y2H9 1570 aa39.66■■■■□ 3.94
TRIM28-204ENST00000594806 ADGBQ8N7X0 1667 aa39.65■■■■□ 3.94
TRIM28-204ENST00000594806 ADAMTSL3P82987 1691 aa39.63■■■■□ 3.93
TRIM28-204ENST00000594806 AEBP2Q6ZN18 517 aaPredicted RBP39.61■■■■□ 3.93
TRIM28-204ENST00000594806 DNMT1P26358 1616 aaKnown RBP39.61■■■■□ 3.93
TRIM28-204ENST00000594806 A2MP01023 1474 aa39.61■■■■□ 3.93
TRIM28-204ENST00000594806 ABCC5O15440 1437 aa39.59■■■■□ 3.93
TRIM28-204ENST00000594806 SHANK2Q9UPX8 1470 aa39.59■■■■□ 3.93
TRIM28-204ENST00000594806 FAM50AQ14320 339 aaKnown RBP39.57■■■■□ 3.93
TRIM28-204ENST00000594806 DAPK1P53355 1430 aa39.57■■■■□ 3.92
TRIM28-204ENST00000594806 CROCC2H7BZ55 1655 aa39.56■■■■□ 3.92
TRIM28-204ENST00000594806 PLXNC1O60486 1568 aa39.55■■■■□ 3.92
TRIM28-204ENST00000594806 DHX29Q7Z478 1369 aaKnown RBP39.53■■■■□ 3.92
TRIM28-204ENST00000594806 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP39.52■■■■□ 3.925e-11■□□□□ 10
TRIM28-204ENST00000594806 MLECQ14165 292 aa39.49■■■■□ 3.91
TRIM28-204ENST00000594806 MADDQ8WXG6 1647 aa39.47■■■■□ 3.91
TRIM28-204ENST00000594806 RRBP1Q9P2E9 1410 aaKnown RBP39.42■■■■□ 3.9
TRIM28-204ENST00000594806 FER1L4A9Z1Z3 1794 aa39.41■■■■□ 3.9
TRIM28-204ENST00000594806 ANKRD30AQ9BXX3 1397 aa39.39■■■■□ 3.9
TRIM28-204ENST00000594806 PTPRMP28827 1452 aa39.37■■■■□ 3.89
TRIM28-204ENST00000594806 DUOX2Q9NRD8 1548 aa39.37■■■■□ 3.89
TRIM28-204ENST00000594806 PPP6R1Q9UPN7 881 aa39.37■■■■□ 3.89
TRIM28-204ENST00000594806 RIMS1Q86UR5 1692 aaKnown RBP39.37■■■■□ 3.89
TRIM28-204ENST00000594806 ADGRL2O95490 1459 aa39.35■■■■□ 3.89
TRIM28-204ENST00000594806 KIF15Q9NS87 1388 aa39.33■■■■□ 3.89
TRIM28-204ENST00000594806 ESF1Q9H501 851 aaKnown RBP39.33■■■■□ 3.89
TRIM28-204ENST00000594806 NCOA1Q15788 1441 aa39.32■■■■□ 3.89
TRIM28-204ENST00000594806 CHIC2Q9UKJ5 165 aa39.32■■■■□ 3.89
TRIM28-204ENST00000594806 KIF3BO15066 747 aa39.31■■■■□ 3.88
TRIM28-204ENST00000594806 CNTLNQ9NXG0 1405 aa39.31■■■■□ 3.88
TRIM28-204ENST00000594806 EIF2AK4Q9P2K8 1649 aaKnown RBP39.3■■■■□ 3.88
TRIM28-204ENST00000594806 RRP7BPQ9NSQ0 103 aa39.29■■■■□ 3.88
TRIM28-204ENST00000594806 GGT6Q6P531 493 aa39.28■■■■□ 3.88
TRIM28-204ENST00000594806 ERBINQ96RT1 1412 aa39.26■■■■□ 3.88
TRIM28-204ENST00000594806 PTPRKQ15262 1439 aa39.23■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms