RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 CDC42BPBQ9Y5S2 1711 aa22.79■■□□□ 1.24
VRK3-207ENST00000594092 ZNF777Q9ULD5 760 aaPredicted RBP22.78■■□□□ 1.24
VRK3-207ENST00000594092 MYO5CQ9NQX4 1742 aa22.77■■□□□ 1.24
VRK3-207ENST00000594092 PLCH2O75038 1416 aa22.74■■□□□ 1.23
VRK3-207ENST00000594092 DNMT1P26358 1616 aaKnown RBP22.74■■□□□ 1.23
VRK3-207ENST00000594092 ARHGAP5Q13017 1502 aa22.73■■□□□ 1.23
VRK3-207ENST00000594092 ABCA9Q8IUA7 1624 aa22.73■■□□□ 1.23
VRK3-207ENST00000594092 DAPK1P53355 1430 aa22.73■■□□□ 1.23
VRK3-207ENST00000594092 MAPKBP1O60336 1514 aa22.73■■□□□ 1.23
VRK3-207ENST00000594092 ABCC5O15440 1437 aa22.72■■□□□ 1.23
VRK3-207ENST00000594092 SAMD9LQ8IVG5 1584 aa22.71■■□□□ 1.23
VRK3-207ENST00000594092 SETD5Q9C0A6 1442 aa22.7■■□□□ 1.22
VRK3-207ENST00000594092 ARAP3Q8WWN8 1544 aa22.68■■□□□ 1.22
VRK3-207ENST00000594092 CHIC2Q9UKJ5 165 aa22.67■■□□□ 1.22
VRK3-207ENST00000594092 RAB3GAP2Q9H2M9 1393 aa22.66■■□□□ 1.22
VRK3-207ENST00000594092 HFM1A2PYH4 1435 aa22.66■■□□□ 1.22
VRK3-207ENST00000594092 EFCAB2Q5VUJ9 269 aa22.65■■□□□ 1.22
VRK3-207ENST00000594092 MBD5Q9P267 1494 aa22.65■■□□□ 1.22
VRK3-207ENST00000594092 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.21
VRK3-207ENST00000594092 AKNAQ7Z591 1439 aa22.63■■□□□ 1.21
VRK3-207ENST00000594092 ARHGEF5Q12774 1597 aa22.63■■□□□ 1.21
VRK3-207ENST00000594092 CROCC2H7BZ55 1655 aa22.63■■□□□ 1.21
VRK3-207ENST00000594092 HNRNPMP52272 730 aaKnown RBP eCLIP22.63■■□□□ 1.21
VRK3-207ENST00000594092 NAIPQ13075 1403 aa22.63■■□□□ 1.21
VRK3-207ENST00000594092 PLEKHH2Q8IVE3 1493 aa22.62■■□□□ 1.21
VRK3-207ENST00000594092 KIAA1107Q9UPP5 1409 aa22.62■■□□□ 1.21
VRK3-207ENST00000594092 ROCK1Q13464 1354 aa22.62■■□□□ 1.21
VRK3-207ENST00000594092 SYCP2Q9BX26 1530 aa22.61■■□□□ 1.21
VRK3-207ENST00000594092 ZEB1P37275 1124 aaPredicted RBP22.61■■□□□ 1.21
VRK3-207ENST00000594092 RRP7BPQ9NSQ0 103 aa22.6■■□□□ 1.21
VRK3-207ENST00000594092 CCDC141Q6ZP82 1450 aa22.59■■□□□ 1.21
VRK3-207ENST00000594092 SHANK2Q9UPX8 1470 aa22.59■■□□□ 1.21
VRK3-207ENST00000594092 CD109Q6YHK3 1445 aa22.58■■□□□ 1.21
VRK3-207ENST00000594092 FANCAO15360 1455 aa22.58■■□□□ 1.21
VRK3-207ENST00000594092 ABCC1P33527 1531 aa22.58■■□□□ 1.2
VRK3-207ENST00000594092 ARHGEF12Q9NZN5 1544 aa22.58■■□□□ 1.2
VRK3-207ENST00000594092 RSPH4AQ5TD94 716 aa22.57■■□□□ 1.2
VRK3-207ENST00000594092 GCC2Q8IWJ2 1684 aa22.57■■□□□ 1.2
VRK3-207ENST00000594092 ADGRL2O95490 1459 aa22.56■■□□□ 1.2
VRK3-207ENST00000594092 ADGBQ8N7X0 1667 aa22.56■■□□□ 1.2
VRK3-207ENST00000594092 C9orf84Q5VXU9 1444 aa22.55■■□□□ 1.2
VRK3-207ENST00000594092 GLI2P10070 1586 aa22.55■■□□□ 1.2
VRK3-207ENST00000594092 TSPY4P0CV99 314 aa22.54■■□□□ 1.2
VRK3-207ENST00000594092 TSPY10P0CW01 314 aa22.54■■□□□ 1.2
VRK3-207ENST00000594092 NCOA1Q15788 1441 aa22.54■■□□□ 1.2
VRK3-207ENST00000594092 DHX57Q6P158 1386 aaKnown RBP22.53■■□□□ 1.2
VRK3-207ENST00000594092 DIP2BQ9P265 1576 aa22.51■■□□□ 1.19
VRK3-207ENST00000594092 ANKRD30AQ9BXX3 1397 aa22.51■■□□□ 1.19
VRK3-207ENST00000594092 MAP3K4Q9Y6R4 1608 aa22.5■■□□□ 1.19
VRK3-207ENST00000594092 TRAPPC8Q9Y2L5 1435 aa22.49■■□□□ 1.19
VRK3-207ENST00000594092 MAST1Q9Y2H9 1570 aa22.49■■□□□ 1.19
VRK3-207ENST00000594092 KDM6BO15054 1643 aa22.49■■□□□ 1.19
VRK3-207ENST00000594092 CFAP74Q9C0B2 1584 aa22.48■■□□□ 1.19
VRK3-207ENST00000594092 ADGRL1O94910 1474 aa22.48■■□□□ 1.19
VRK3-207ENST00000594092 FAM69CQ0P6D2 419 aa22.47■■□□□ 1.19
VRK3-207ENST00000594092 SCAPERQ9BY12 1400 aa22.45■■□□□ 1.18
VRK3-207ENST00000594092 DNAJC5Q9H3Z4 198 aa22.45■■□□□ 1.18
VRK3-207ENST00000594092 NEO1Q92859 1461 aa22.43■■□□□ 1.18
VRK3-207ENST00000594092 AFAP1Q8N556 730 aa22.42■■□□□ 1.18
VRK3-207ENST00000594092 KIF15Q9NS87 1388 aa22.41■■□□□ 1.18
VRK3-207ENST00000594092 PLXNC1O60486 1568 aa22.4■■□□□ 1.18
VRK3-207ENST00000594092 CLSPNQ9HAW4 1339 aa22.39■■□□□ 1.18
VRK3-207ENST00000594092 ANKRD50Q9ULJ7 1429 aa22.39■■□□□ 1.17
VRK3-207ENST00000594092 SPAG9O60271 1321 aaKnown RBP22.38■■□□□ 1.17
VRK3-207ENST00000594092 RTEL1-TNFRSF6BF6WH68 1400 aa22.37■■□□□ 1.17
VRK3-207ENST00000594092 KIF13AQ9H1H9 1805 aa22.37■■□□□ 1.17
VRK3-207ENST00000594092 ACIN1Q9UKV3 1341 aaKnown RBP22.36■■□□□ 1.17
VRK3-207ENST00000594092 ZFYVE16Q7Z3T8 1539 aa22.35■■□□□ 1.17
VRK3-207ENST00000594092 ZNF518AQ6AHZ1 1483 aa22.35■■□□□ 1.17
VRK3-207ENST00000594092 TRIM52Q96A61 297 aa22.34■■□□□ 1.17
VRK3-207ENST00000594092 POGZQ7Z3K3 1410 aa22.34■■□□□ 1.17
VRK3-207ENST00000594092 PPRC1Q5VV67 1664 aaKnown RBP22.34■■□□□ 1.17
VRK3-207ENST00000594092 INO80Q9ULG1 1556 aaPredicted RBP22.33■■□□□ 1.17
VRK3-207ENST00000594092 TSPOAP1O95153 1857 aa22.32■■□□□ 1.16
VRK3-207ENST00000594092 ATP7AQ04656 1500 aa22.32■■□□□ 1.16
VRK3-207ENST00000594092 DUOX2Q9NRD8 1548 aa22.31■■□□□ 1.16
VRK3-207ENST00000594092 KDM5CP41229 1560 aa22.31■■□□□ 1.16
VRK3-207ENST00000594092 DENND4BO75064 1496 aaPredicted RBP22.3■■□□□ 1.16
VRK3-207ENST00000594092 TEX14Q8IWB6 1497 aa22.3■■□□□ 1.16
VRK3-207ENST00000594092 KIDINS220Q9ULH0 1771 aa22.26■■□□□ 1.15
VRK3-207ENST00000594092 ERBINQ96RT1 1412 aa22.26■■□□□ 1.15
VRK3-207ENST00000594092 RAPGEF3O95398 923 aa22.26■■□□□ 1.15
VRK3-207ENST00000594092 MPHOSPH9Q99550 1183 aa22.25■■□□□ 1.15
VRK3-207ENST00000594092 MLH3Q9UHC1 1453 aa22.25■■□□□ 1.15
VRK3-207ENST00000594092 RICTORQ6R327 1708 aa22.25■■□□□ 1.15
VRK3-207ENST00000594092 MYT1LQ9UL68 1186 aa22.24■■□□□ 1.15
VRK3-207ENST00000594092 PZPP20742 1482 aa22.24■■□□□ 1.15
VRK3-207ENST00000594092 HECW2Q9P2P5 1572 aa22.23■■□□□ 1.15
VRK3-207ENST00000594092 KDM5DQ9BY66 1539 aa22.21■■□□□ 1.15
VRK3-207ENST00000594092 NUP155O75694 1391 aa22.2■■□□□ 1.14
VRK3-207ENST00000594092 FRMPD1Q5SYB0 1578 aa22.2■■□□□ 1.14
VRK3-207ENST00000594092 SLC4A1APQ9BWU0 796 aaKnown RBP22.2■■□□□ 1.14
VRK3-207ENST00000594092 UNC13BO14795 1591 aa22.19■■□□□ 1.14
VRK3-207ENST00000594092 DHX29Q7Z478 1369 aaKnown RBP22.18■■□□□ 1.14
VRK3-207ENST00000594092 SIN3AQ96ST3 1273 aa22.15■■□□□ 1.14
VRK3-207ENST00000594092 ABCA6Q8N139 1617 aa22.15■■□□□ 1.14
VRK3-207ENST00000594092 MAGI2Q86UL8 1455 aa22.15■■□□□ 1.14
VRK3-207ENST00000594092 ZMYM4Q5VZL5 1548 aa22.14■■□□□ 1.14
VRK3-207ENST00000594092 A2MP01023 1474 aa22.14■■□□□ 1.13
VRK3-207ENST00000594092 FOXD1Q16676 465 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms