RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 DENND4BO75064 1496 aaPredicted RBP23.09■■□□□ 1.29
VRK3-206ENST00000594090 ADGRL1O94910 1474 aa23.09■■□□□ 1.29
VRK3-206ENST00000594090 EFCAB2Q5VUJ9 269 aa23.08■■□□□ 1.28
VRK3-206ENST00000594090 RAPGEF3O95398 923 aa23.07■■□□□ 1.28
VRK3-206ENST00000594090 MAP3K1Q13233 1512 aa23.06■■□□□ 1.28
VRK3-206ENST00000594090 GPATCH8Q9UKJ3 1502 aaKnown RBP23.03■■□□□ 1.28
VRK3-206ENST00000594090 SCAPERQ9BY12 1400 aa23.03■■□□□ 1.28
VRK3-206ENST00000594090 SUPT6HQ7KZ85 1726 aaKnown RBP23.03■■□□□ 1.28
VRK3-206ENST00000594090 LRRC9Q6ZRR7 1453 aa23.02■■□□□ 1.28
VRK3-206ENST00000594090 ZMYM4Q5VZL5 1548 aa23.02■■□□□ 1.28
VRK3-206ENST00000594090 POGZQ7Z3K3 1410 aa23.02■■□□□ 1.28
VRK3-206ENST00000594090 ABCC1P33527 1531 aa23■■□□□ 1.27
VRK3-206ENST00000594090 CCNB3Q8WWL7 1395 aa23■■□□□ 1.27
VRK3-206ENST00000594090 ITSN2Q9NZM3 1697 aa22.99■■□□□ 1.27
VRK3-206ENST00000594090 NCOA2Q15596 1464 aa22.99■■□□□ 1.27
VRK3-206ENST00000594090 SAMD9LQ8IVG5 1584 aa22.98■■□□□ 1.27
VRK3-206ENST00000594090 ARHGEF40Q8TER5 1519 aa22.97■■□□□ 1.27
VRK3-206ENST00000594090 ZNF518AQ6AHZ1 1483 aa22.95■■□□□ 1.26
VRK3-206ENST00000594090 ARHGEF12Q9NZN5 1544 aa22.94■■□□□ 1.26
VRK3-206ENST00000594090 KDM5CP41229 1560 aa22.93■■□□□ 1.26
VRK3-206ENST00000594090 KANK4Q5T7N3 995 aaPredicted RBP22.92■■□□□ 1.26
VRK3-206ENST00000594090 CFDP1Q9UEE9 299 aaPredicted RBP22.92■■□□□ 1.26
VRK3-206ENST00000594090 ZFYVE16Q7Z3T8 1539 aa22.92■■□□□ 1.26
VRK3-206ENST00000594090 MAGI2Q86UL8 1455 aa22.92■■□□□ 1.26
VRK3-206ENST00000594090 SYCP2Q9BX26 1530 aa22.91■■□□□ 1.26
VRK3-206ENST00000594090 APLP2Q06481 763 aa22.91■■□□□ 1.26
VRK3-206ENST00000594090 ZNF777Q9ULD5 760 aaPredicted RBP22.9■■□□□ 1.26
VRK3-206ENST00000594090 YEATS2Q9ULM3 1422 aa22.89■■□□□ 1.25
VRK3-206ENST00000594090 TRAPPC8Q9Y2L5 1435 aa22.89■■□□□ 1.25
VRK3-206ENST00000594090 PLEKHH2Q8IVE3 1493 aa22.89■■□□□ 1.25
VRK3-206ENST00000594090 HECW2Q9P2P5 1572 aa22.88■■□□□ 1.25
VRK3-206ENST00000594090 AFAP1Q8N556 730 aa22.87■■□□□ 1.25
VRK3-206ENST00000594090 KIAA1107Q9UPP5 1409 aa22.86■■□□□ 1.25
VRK3-206ENST00000594090 KDM4FA0A1W2PPD8 638 aa22.85■■□□□ 1.25
VRK3-206ENST00000594090 MLH3Q9UHC1 1453 aa22.82■■□□□ 1.24
VRK3-206ENST00000594090 ZNF644Q9H582 1327 aaPredicted RBP22.81■■□□□ 1.24
VRK3-206ENST00000594090 HNRNPMP52272 730 aaKnown RBP eCLIP22.81■■□□□ 1.24
VRK3-206ENST00000594090 CAMSAP2Q08AD1 1489 aa22.8■■□□□ 1.24
VRK3-206ENST00000594090 SIGLEC1Q9BZZ2 1709 aa22.8■■□□□ 1.24
VRK3-206ENST00000594090 ABCA6Q8N139 1617 aa22.79■■□□□ 1.24
VRK3-206ENST00000594090 DIP2CQ9Y2E4 1556 aa22.79■■□□□ 1.24
VRK3-206ENST00000594090 KIDINS220Q9ULH0 1771 aa22.79■■□□□ 1.24
VRK3-206ENST00000594090 ATP10AO60312 1499 aa22.78■■□□□ 1.24
VRK3-206ENST00000594090 MYOM3Q5VTT5 1437 aa22.78■■□□□ 1.24
VRK3-206ENST00000594090 MBD5Q9P267 1494 aa22.78■■□□□ 1.24
VRK3-206ENST00000594090 C9orf84Q5VXU9 1444 aa22.78■■□□□ 1.24
VRK3-206ENST00000594090 AEBP2Q6ZN18 517 aaPredicted RBP22.77■■□□□ 1.24
VRK3-206ENST00000594090 BCORL1Q5H9F3 1711 aa22.76■■□□□ 1.23
VRK3-206ENST00000594090 INO80Q9ULG1 1556 aaPredicted RBP22.76■■□□□ 1.23
VRK3-206ENST00000594090 MYT1LQ9UL68 1186 aa22.74■■□□□ 1.23
VRK3-206ENST00000594090 MIA2Q96PC5 1412 aa22.74■■□□□ 1.23
VRK3-206ENST00000594090 REREQ9P2R6 1566 aa22.74■■□□□ 1.23
VRK3-206ENST00000594090 ADAMTSL3P82987 1691 aa22.73■■□□□ 1.23
VRK3-206ENST00000594090 ATP7AQ04656 1500 aa22.73■■□□□ 1.23
VRK3-206ENST00000594090 ARID4BQ4LE39 1312 aaPredicted RBP22.73■■□□□ 1.23
VRK3-206ENST00000594090 SPAG9O60271 1321 aaKnown RBP22.72■■□□□ 1.23
VRK3-206ENST00000594090 CCDC141Q6ZP82 1450 aa22.72■■□□□ 1.23
VRK3-206ENST00000594090 ARHGEF5Q12774 1597 aa22.71■■□□□ 1.23
VRK3-206ENST00000594090 PTPN23Q9H3S7 1636 aa22.68■■□□□ 1.22
VRK3-206ENST00000594090 MADDQ8WXG6 1647 aa22.67■■□□□ 1.22
VRK3-206ENST00000594090 FGD6Q6ZV73 1430 aa22.66■■□□□ 1.22
VRK3-206ENST00000594090 RTEL1-TNFRSF6BF6WH68 1400 aa22.65■■□□□ 1.22
VRK3-206ENST00000594090 RSPH4AQ5TD94 716 aa22.65■■□□□ 1.22
VRK3-206ENST00000594090 AGLP35573 1532 aa22.64■■□□□ 1.22
VRK3-206ENST00000594090 ADGBQ8N7X0 1667 aa22.63■■□□□ 1.21
VRK3-206ENST00000594090 TCOF1Q13428 1488 aaKnown RBP22.62■■□□□ 1.21
VRK3-206ENST00000594090 PLXNC1O60486 1568 aa22.62■■□□□ 1.21
VRK3-206ENST00000594090 MAST1Q9Y2H9 1570 aa22.61■■□□□ 1.21
VRK3-206ENST00000594090 RIMS1Q86UR5 1692 aaKnown RBP22.6■■□□□ 1.21
VRK3-206ENST00000594090 FER1L4A9Z1Z3 1794 aa22.6■■□□□ 1.21
VRK3-206ENST00000594090 A2MP01023 1474 aa22.6■■□□□ 1.21
VRK3-206ENST00000594090 MLECQ14165 292 aa22.59■■□□□ 1.21
VRK3-206ENST00000594090 CROCC2H7BZ55 1655 aa22.58■■□□□ 1.21
VRK3-206ENST00000594090 PTPRMP28827 1452 aa22.58■■□□□ 1.21
VRK3-206ENST00000594090 TSPY4P0CV99 314 aa22.56■■□□□ 1.2
VRK3-206ENST00000594090 TSPY10P0CW01 314 aa22.56■■□□□ 1.2
VRK3-206ENST00000594090 DNMT1P26358 1616 aaKnown RBP22.56■■□□□ 1.2
VRK3-206ENST00000594090 SHANK2Q9UPX8 1470 aa22.54■■□□□ 1.2
VRK3-206ENST00000594090 PPARGC1BQ86YN6 1023 aaKnown RBP22.53■■□□□ 1.2
VRK3-206ENST00000594090 ABCC5O15440 1437 aa22.53■■□□□ 1.2
VRK3-206ENST00000594090 DAPK1P53355 1430 aa22.52■■□□□ 1.2
VRK3-206ENST00000594090 DHX29Q7Z478 1369 aaKnown RBP22.5■■□□□ 1.19
VRK3-206ENST00000594090 FAM50AQ14320 339 aaKnown RBP22.46■■□□□ 1.19
VRK3-206ENST00000594090 CNTLNQ9NXG0 1405 aa22.42■■□□□ 1.18
VRK3-206ENST00000594090 DUOX2Q9NRD8 1548 aa22.42■■□□□ 1.18
VRK3-206ENST00000594090 EIF2AK4Q9P2K8 1649 aaKnown RBP22.42■■□□□ 1.18
VRK3-206ENST00000594090 MROH2AA6NES4 1674 aa22.41■■□□□ 1.18
VRK3-206ENST00000594090 C3P01024 1663 aa22.41■■□□□ 1.18
VRK3-206ENST00000594090 KIF15Q9NS87 1388 aa22.4■■□□□ 1.18
VRK3-206ENST00000594090 ESF1Q9H501 851 aaKnown RBP22.4■■□□□ 1.18
VRK3-206ENST00000594090 CLTCQ00610 1675 aaKnown RBP22.39■■□□□ 1.18
VRK3-206ENST00000594090 KIF3BO15066 747 aa22.39■■□□□ 1.17
VRK3-206ENST00000594090 GGT6Q6P531 493 aa22.39■■□□□ 1.17
VRK3-206ENST00000594090 ADGRL2O95490 1459 aa22.38■■□□□ 1.17
VRK3-206ENST00000594090 RNF17Q9BXT8 1623 aaKnown RBP22.38■■□□□ 1.17
VRK3-206ENST00000594090 PLPPR3Q6T4P5 718 aa22.38■■□□□ 1.17
VRK3-206ENST00000594090 ANKRD30AQ9BXX3 1397 aa22.37■■□□□ 1.17
VRK3-206ENST00000594090 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.37■■□□□ 1.17
VRK3-206ENST00000594090 RRBP1Q9P2E9 1410 aaKnown RBP22.36■■□□□ 1.17
VRK3-206ENST00000594090 CHIC2Q9UKJ5 165 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms