RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 NPM1P06748 294 aaKnown RBP eCLIP19.84■□□□□ 0.77
VRK3-205ENST00000593919 CAMSAP2Q08AD1 1489 aa19.84■□□□□ 0.77
VRK3-205ENST00000593919 ZNF644Q9H582 1327 aaPredicted RBP19.83■□□□□ 0.76
VRK3-205ENST00000593919 PTPRKQ15262 1439 aa19.82■□□□□ 0.76
VRK3-205ENST00000593919 DNMT1P26358 1616 aaKnown RBP19.8■□□□□ 0.76
VRK3-205ENST00000593919 ZNF777Q9ULD5 760 aaPredicted RBP19.79■□□□□ 0.76
VRK3-205ENST00000593919 ABCA9Q8IUA7 1624 aa19.77■□□□□ 0.76
VRK3-205ENST00000593919 ARHGAP5Q13017 1502 aa19.77■□□□□ 0.76
VRK3-205ENST00000593919 SAMD9LQ8IVG5 1584 aa19.76■□□□□ 0.75
VRK3-205ENST00000593919 DAPK1P53355 1430 aa19.75■□□□□ 0.75
VRK3-205ENST00000593919 CROCC2H7BZ55 1655 aa19.74■□□□□ 0.75
VRK3-205ENST00000593919 MAPKBP1O60336 1514 aa19.74■□□□□ 0.75
VRK3-205ENST00000593919 ABCC5O15440 1437 aa19.74■□□□□ 0.75
VRK3-205ENST00000593919 PLCH2O75038 1416 aa19.74■□□□□ 0.75
VRK3-205ENST00000593919 SETD5Q9C0A6 1442 aa19.73■□□□□ 0.75
VRK3-205ENST00000593919 RAB3GAP2Q9H2M9 1393 aa19.71■□□□□ 0.75
VRK3-205ENST00000593919 ARAP3Q8WWN8 1544 aa19.71■□□□□ 0.75
VRK3-205ENST00000593919 HFM1A2PYH4 1435 aa19.7■□□□□ 0.74
VRK3-205ENST00000593919 CHIC2Q9UKJ5 165 aa19.7■□□□□ 0.74
VRK3-205ENST00000593919 CCER1Q8TC90 406 aaPredicted RBP19.69■□□□□ 0.74
VRK3-205ENST00000593919 ARHGEF5Q12774 1597 aa19.69■□□□□ 0.74
VRK3-205ENST00000593919 GCC2Q8IWJ2 1684 aa19.68■□□□□ 0.74
VRK3-205ENST00000593919 SYCP2Q9BX26 1530 aa19.68■□□□□ 0.74
VRK3-205ENST00000593919 ADGBQ8N7X0 1667 aa19.67■□□□□ 0.74
VRK3-205ENST00000593919 MBD5Q9P267 1494 aa19.67■□□□□ 0.74
VRK3-205ENST00000593919 NAIPQ13075 1403 aa19.67■□□□□ 0.74
VRK3-205ENST00000593919 AKNAQ7Z591 1439 aa19.67■□□□□ 0.74
VRK3-205ENST00000593919 HNRNPMP52272 730 aaKnown RBP eCLIP19.64■□□□□ 0.74
VRK3-205ENST00000593919 EFCAB2Q5VUJ9 269 aa19.64■□□□□ 0.74
VRK3-205ENST00000593919 PLEKHH2Q8IVE3 1493 aa19.64■□□□□ 0.74
VRK3-205ENST00000593919 ROCK1Q13464 1354 aa19.64■□□□□ 0.73
VRK3-205ENST00000593919 RRP7BPQ9NSQ0 103 aa19.64■□□□□ 0.73
VRK3-205ENST00000593919 SHANK2Q9UPX8 1470 aa19.64■□□□□ 0.73
VRK3-205ENST00000593919 ABCC1P33527 1531 aa19.64■□□□□ 0.73
VRK3-205ENST00000593919 KIAA1107Q9UPP5 1409 aa19.63■□□□□ 0.73
VRK3-205ENST00000593919 FANCAO15360 1455 aa19.63■□□□□ 0.73
VRK3-205ENST00000593919 CCDC141Q6ZP82 1450 aa19.63■□□□□ 0.73
VRK3-205ENST00000593919 ARHGEF12Q9NZN5 1544 aa19.61■□□□□ 0.73
VRK3-205ENST00000593919 ADGRL2O95490 1459 aa19.61■□□□□ 0.73
VRK3-205ENST00000593919 C9orf84Q5VXU9 1444 aa19.6■□□□□ 0.73
VRK3-205ENST00000593919 CD109Q6YHK3 1445 aa19.6■□□□□ 0.73
VRK3-205ENST00000593919 DHX57Q6P158 1386 aaKnown RBP19.59■□□□□ 0.73
VRK3-205ENST00000593919 NCOA1Q15788 1441 aa19.59■□□□□ 0.73
VRK3-205ENST00000593919 KDM6BO15054 1643 aa19.58■□□□□ 0.73
VRK3-205ENST00000593919 MAP3K4Q9Y6R4 1608 aa19.58■□□□□ 0.72
VRK3-205ENST00000593919 GLI2P10070 1586 aa19.58■□□□□ 0.72
VRK3-205ENST00000593919 DIP2BQ9P265 1576 aa19.58■□□□□ 0.72
VRK3-205ENST00000593919 RSPH4AQ5TD94 716 aa19.57■□□□□ 0.72
VRK3-205ENST00000593919 CFAP74Q9C0B2 1584 aa19.56■□□□□ 0.72
VRK3-205ENST00000593919 TSPY4P0CV99 314 aa19.56■□□□□ 0.72
VRK3-205ENST00000593919 TSPY10P0CW01 314 aa19.56■□□□□ 0.72
VRK3-205ENST00000593919 ANKRD30AQ9BXX3 1397 aa19.55■□□□□ 0.72
VRK3-205ENST00000593919 MAST1Q9Y2H9 1570 aa19.55■□□□□ 0.72
VRK3-205ENST00000593919 ADGRL1O94910 1474 aa19.54■□□□□ 0.72
VRK3-205ENST00000593919 TRAPPC8Q9Y2L5 1435 aa19.53■□□□□ 0.72
VRK3-205ENST00000593919 KIF13AQ9H1H9 1805 aa19.5■□□□□ 0.71
VRK3-205ENST00000593919 PLXNC1O60486 1568 aa19.49■□□□□ 0.71
VRK3-205ENST00000593919 FAM69CQ0P6D2 419 aa19.49■□□□□ 0.71
VRK3-205ENST00000593919 SCAPERQ9BY12 1400 aa19.49■□□□□ 0.71
VRK3-205ENST00000593919 TSPOAP1O95153 1857 aa19.48■□□□□ 0.71
VRK3-205ENST00000593919 KIF15Q9NS87 1388 aa19.48■□□□□ 0.71
VRK3-205ENST00000593919 NEO1Q92859 1461 aa19.47■□□□□ 0.71
VRK3-205ENST00000593919 AFAP1Q8N556 730 aa19.46■□□□□ 0.71
VRK3-205ENST00000593919 ANKRD50Q9ULJ7 1429 aa19.46■□□□□ 0.71
VRK3-205ENST00000593919 CLSPNQ9HAW4 1339 aa19.46■□□□□ 0.71
VRK3-205ENST00000593919 ZFYVE16Q7Z3T8 1539 aa19.45■□□□□ 0.7
VRK3-205ENST00000593919 PPRC1Q5VV67 1664 aaKnown RBP19.45■□□□□ 0.7
VRK3-205ENST00000593919 INO80Q9ULG1 1556 aaPredicted RBP19.44■□□□□ 0.7
VRK3-205ENST00000593919 SPAG9O60271 1321 aaKnown RBP19.43■□□□□ 0.7
VRK3-205ENST00000593919 ZNF518AQ6AHZ1 1483 aa19.43■□□□□ 0.7
VRK3-205ENST00000593919 DNAJC5Q9H3Z4 198 aa19.42■□□□□ 0.7
VRK3-205ENST00000593919 ATP7AQ04656 1500 aa19.41■□□□□ 0.7
VRK3-205ENST00000593919 RTEL1-TNFRSF6BF6WH68 1400 aa19.41■□□□□ 0.7
VRK3-205ENST00000593919 POGZQ7Z3K3 1410 aa19.41■□□□□ 0.7
VRK3-205ENST00000593919 TRIM52Q96A61 297 aa19.41■□□□□ 0.7
VRK3-205ENST00000593919 KDM5CP41229 1560 aa19.4■□□□□ 0.7
VRK3-205ENST00000593919 ACIN1Q9UKV3 1341 aaKnown RBP19.39■□□□□ 0.69
VRK3-205ENST00000593919 DUOX2Q9NRD8 1548 aa19.39■□□□□ 0.69
VRK3-205ENST00000593919 KIDINS220Q9ULH0 1771 aa19.38■□□□□ 0.69
VRK3-205ENST00000593919 RICTORQ6R327 1708 aa19.37■□□□□ 0.69
VRK3-205ENST00000593919 DENND4BO75064 1496 aaPredicted RBP19.36■□□□□ 0.69
VRK3-205ENST00000593919 TEX14Q8IWB6 1497 aa19.36■□□□□ 0.69
VRK3-205ENST00000593919 HECW2Q9P2P5 1572 aa19.35■□□□□ 0.69
VRK3-205ENST00000593919 ERBINQ96RT1 1412 aa19.34■□□□□ 0.69
VRK3-205ENST00000593919 PZPP20742 1482 aa19.33■□□□□ 0.69
VRK3-205ENST00000593919 MPHOSPH9Q99550 1183 aa19.32■□□□□ 0.68
VRK3-205ENST00000593919 MYT1LQ9UL68 1186 aa19.32■□□□□ 0.68
VRK3-205ENST00000593919 UNC13BO14795 1591 aa19.32■□□□□ 0.68
VRK3-205ENST00000593919 RAPGEF3O95398 923 aa19.32■□□□□ 0.68
VRK3-205ENST00000593919 MLH3Q9UHC1 1453 aa19.31■□□□□ 0.68
VRK3-205ENST00000593919 KDM5DQ9BY66 1539 aa19.31■□□□□ 0.68
VRK3-205ENST00000593919 FRMPD1Q5SYB0 1578 aa19.31■□□□□ 0.68
VRK3-205ENST00000593919 NUP155O75694 1391 aa19.29■□□□□ 0.68
VRK3-205ENST00000593919 SLC4A1APQ9BWU0 796 aaKnown RBP19.28■□□□□ 0.68
VRK3-205ENST00000593919 ABCA6Q8N139 1617 aa19.28■□□□□ 0.68
VRK3-205ENST00000593919 AEBP2Q6ZN18 517 aaPredicted RBP19.26■□□□□ 0.67
VRK3-205ENST00000593919 EIF2AK4Q9P2K8 1649 aaKnown RBP19.26■□□□□ 0.67
VRK3-205ENST00000593919 MAGI2Q86UL8 1455 aa19.26■□□□□ 0.67
VRK3-205ENST00000593919 SIN3AQ96ST3 1273 aa19.26■□□□□ 0.67
VRK3-205ENST00000593919 FAM135AQ9P2D6 1515 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms