RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 POGZQ7Z3K3 1410 aa24.38■■□□□ 1.49
PNKP-202ENST00000593706 MAGI2Q86UL8 1455 aa24.37■■□□□ 1.49
PNKP-202ENST00000593706 PLCH2O75038 1416 aa24.36■■□□□ 1.49
PNKP-202ENST00000593706 YEATS2Q9ULM3 1422 aa24.36■■□□□ 1.49
PNKP-202ENST00000593706 CHIC1Q5VXU3 224 aa24.36■■□□□ 1.49
PNKP-202ENST00000593706 LMTK3Q96Q04 1460 aa24.34■■□□□ 1.49
PNKP-202ENST00000593706 SCAPERQ9BY12 1400 aa24.34■■□□□ 1.49
PNKP-202ENST00000593706 ARHGAP5Q13017 1502 aa24.3■■□□□ 1.48
PNKP-202ENST00000593706 CDK11AQ9UQ88 783 aaPredicted RBP24.3■■□□□ 1.48
PNKP-202ENST00000593706 CDC42BPBQ9Y5S2 1711 aa24.3■■□□□ 1.48
PNKP-202ENST00000593706 CLIP1P30622 1438 aa24.28■■□□□ 1.48
PNKP-202ENST00000593706 TROQ12816 1431 aaPredicted RBP24.27■■□□□ 1.48
PNKP-202ENST00000593706 PLPPR3Q6T4P5 718 aa24.26■■□□□ 1.47
PNKP-202ENST00000593706 PREX2Q70Z35 1606 aa24.25■■□□□ 1.47
PNKP-202ENST00000593706 ZNF518AQ6AHZ1 1483 aa24.25■■□□□ 1.47
PNKP-202ENST00000593706 MLECQ14165 292 aa24.24■■□□□ 1.47
PNKP-202ENST00000593706 EFCAB2Q5VUJ9 269 aa24.24■■□□□ 1.47
PNKP-202ENST00000593706 C9orf84Q5VXU9 1444 aa24.24■■□□□ 1.47
PNKP-202ENST00000593706 ATP10AO60312 1499 aa24.23■■□□□ 1.47
PNKP-202ENST00000593706 KDM5CP41229 1560 aa24.23■■□□□ 1.47
PNKP-202ENST00000593706 PREX1Q8TCU6 1659 aa24.23■■□□□ 1.47
PNKP-202ENST00000593706 ITSN2Q9NZM3 1697 aa24.21■■□□□ 1.47
PNKP-202ENST00000593706 ARHGEF12Q9NZN5 1544 aa24.2■■□□□ 1.47
PNKP-202ENST00000593706 CCDC18Q5T9S5 1454 aa24.2■■□□□ 1.47
PNKP-202ENST00000593706 CDC42BPAQ5VT25 1732 aa24.2■■□□□ 1.46
PNKP-202ENST00000593706 DIP2CQ9Y2E4 1556 aa24.17■■□□□ 1.46
PNKP-202ENST00000593706 FBXO41Q8TF61 875 aa24.17■■□□□ 1.46
PNKP-202ENST00000593706 ABCA6Q8N139 1617 aa24.17■■□□□ 1.46
PNKP-202ENST00000593706 CASKIN1Q8WXD9 1431 aa24.15■■□□□ 1.46
PNKP-202ENST00000593706 ABCC1P33527 1531 aa24.15■■□□□ 1.46
PNKP-202ENST00000593706 HSPA2P54652 639 aa24.14■■□□□ 1.45
PNKP-202ENST00000593706 MYT1LQ9UL68 1186 aa24.13■■□□□ 1.45
PNKP-202ENST00000593706 REREQ9P2R6 1566 aa24.12■■□□□ 1.45
PNKP-202ENST00000593706 FYCO1Q9BQS8 1478 aa24.11■■□□□ 1.45
PNKP-202ENST00000593706 SETD1BQ9UPS6 1966 aaKnown RBP24.09■■□□□ 1.45
PNKP-202ENST00000593706 C3P01024 1663 aa24.08■■□□□ 1.45
PNKP-202ENST00000593706 AFAP1Q8N556 730 aa24.08■■□□□ 1.45
PNKP-202ENST00000593706 KIDINS220Q9ULH0 1771 aa24.07■■□□□ 1.44
PNKP-202ENST00000593706 MLH3Q9UHC1 1453 aa24.06■■□□□ 1.44
PNKP-202ENST00000593706 TRAPPC8Q9Y2L5 1435 aa24.01■■□□□ 1.43
PNKP-202ENST00000593706 STRCQ7RTU9 1775 aa24.01■■□□□ 1.43
PNKP-202ENST00000593706 SAMD9LQ8IVG5 1584 aa24.01■■□□□ 1.43
PNKP-202ENST00000593706 AGLP35573 1532 aa24■■□□□ 1.43
PNKP-202ENST00000593706 CEBPAP49715 358 aaPredicted RBP23.99■■□□□ 1.43
PNKP-202ENST00000593706 UHRF1BP1Q6BDS2 1440 aa23.99■■□□□ 1.43
PNKP-202ENST00000593706 SYCP2Q9BX26 1530 aa23.98■■□□□ 1.43
PNKP-202ENST00000593706 SUPT6HQ7KZ85 1726 aaKnown RBP23.98■■□□□ 1.43
PNKP-202ENST00000593706 MROH2AA6NES4 1674 aa23.94■■□□□ 1.42
PNKP-202ENST00000593706 ESF1Q9H501 851 aaKnown RBP23.93■■□□□ 1.42
PNKP-202ENST00000593706 ZNF777Q9ULD5 760 aaPredicted RBP23.92■■□□□ 1.42
PNKP-202ENST00000593706 INO80Q9ULG1 1556 aaPredicted RBP23.91■■□□□ 1.42
PNKP-202ENST00000593706 GPATCH8Q9UKJ3 1502 aaKnown RBP23.9■■□□□ 1.42
PNKP-202ENST00000593706 ATP7AQ04656 1500 aa23.89■■□□□ 1.42
PNKP-202ENST00000593706 CLTCQ00610 1675 aaKnown RBP23.88■■□□□ 1.41
PNKP-202ENST00000593706 CNTLNQ9NXG0 1405 aa23.87■■□□□ 1.41
PNKP-202ENST00000593706 CERKQ8TCT0 537 aa23.87■■□□□ 1.41
PNKP-202ENST00000593706 PLEKHH2Q8IVE3 1493 aa23.86■■□□□ 1.41
PNKP-202ENST00000593706 ADGBQ8N7X0 1667 aa23.86■■□□□ 1.41
PNKP-202ENST00000593706 PLXNC1O60486 1568 aa23.83■■□□□ 1.41
PNKP-202ENST00000593706 MTUS2Q5JR59 1369 aa23.83■■□□□ 1.41
PNKP-202ENST00000593706 CCNB3Q8WWL7 1395 aa23.83■■□□□ 1.41
PNKP-202ENST00000593706 DMRT2Q9Y5R5 561 aa23.83■■□□□ 1.41
PNKP-202ENST00000593706 EHBP1L1Q8N3D4 1523 aa23.83■■□□□ 1.41
PNKP-202ENST00000593706 SPAG9O60271 1321 aaKnown RBP23.83■■□□□ 1.4
PNKP-202ENST00000593706 TIAM1Q13009 1591 aa23.82■■□□□ 1.4
PNKP-202ENST00000593706 HNRNPMP52272 730 aaKnown RBP eCLIP23.8■■□□□ 1.4
PNKP-202ENST00000593706 CFDP1Q9UEE9 299 aaPredicted RBP23.8■■□□□ 1.4
PNKP-202ENST00000593706 KIAA1107Q9UPP5 1409 aa23.8■■□□□ 1.4
PNKP-202ENST00000593706 MYO3AQ8NEV4 1616 aa23.78■■□□□ 1.4
PNKP-202ENST00000593706 ZNF142P52746 1687 aaPredicted RBP23.78■■□□□ 1.4
PNKP-202ENST00000593706 A2MP01023 1474 aa23.76■■□□□ 1.39
PNKP-202ENST00000593706 PTPRTO14522 1441 aa23.75■■□□□ 1.39
PNKP-202ENST00000593706 NPATQ14207 1427 aa23.75■■□□□ 1.39
PNKP-202ENST00000593706 CAMSAP1Q5T5Y3 1602 aa23.74■■□□□ 1.39
PNKP-202ENST00000593706 NCOA1Q15788 1441 aa23.72■■□□□ 1.39
PNKP-202ENST00000593706 CEP162Q5TB80 1403 aa23.7■■□□□ 1.38
PNKP-202ENST00000593706 ZMYM3Q14202 1370 aa23.7■■□□□ 1.38
PNKP-202ENST00000593706 CEP170BQ9Y4F5 1589 aaPredicted RBP23.69■■□□□ 1.38
PNKP-202ENST00000593706 LTBP4Q8N2S1 1624 aa23.66■■□□□ 1.38
PNKP-202ENST00000593706 ZNF644Q9H582 1327 aaPredicted RBP23.64■■□□□ 1.38
PNKP-202ENST00000593706 GGT6Q6P531 493 aa23.64■■□□□ 1.37
PNKP-202ENST00000593706 MBD5Q9P267 1494 aa23.63■■□□□ 1.37
PNKP-202ENST00000593706 CAMSAP2Q08AD1 1489 aa23.62■■□□□ 1.37
PNKP-202ENST00000593706 POLR1AO95602 1720 aaPredicted RBP23.62■■□□□ 1.37
PNKP-202ENST00000593706 PTPRKQ15262 1439 aa23.61■■□□□ 1.37
PNKP-202ENST00000593706 NCOA2Q15596 1464 aa23.61■■□□□ 1.37
PNKP-202ENST00000593706 CCDC141Q6ZP82 1450 aa23.61■■□□□ 1.37
PNKP-202ENST00000593706 RTEL1-TNFRSF6BF6WH68 1400 aa23.6■■□□□ 1.37
PNKP-202ENST00000593706 IQSEC2Q5JU85 1478 aa23.59■■□□□ 1.37
PNKP-202ENST00000593706 PLA2R1Q13018 1463 aa23.58■■□□□ 1.37
PNKP-202ENST00000593706 KDM5DQ9BY66 1539 aa23.55■■□□□ 1.36
PNKP-202ENST00000593706 ARHGEF5Q12774 1597 aa23.55■■□□□ 1.36
PNKP-202ENST00000593706 DNMT1P26358 1616 aaKnown RBP23.55■■□□□ 1.36
PNKP-202ENST00000593706 FAM135AQ9P2D6 1515 aa23.54■■□□□ 1.36
PNKP-202ENST00000593706 PPP6R1Q9UPN7 881 aa23.54■■□□□ 1.36
PNKP-202ENST00000593706 NCKAP5LQ9HCH0 1330 aa23.54■■□□□ 1.36
PNKP-202ENST00000593706 DHX29Q7Z478 1369 aaKnown RBP23.53■■□□□ 1.36
PNKP-202ENST00000593706 TCOF1Q13428 1488 aaKnown RBP23.53■■□□□ 1.36
PNKP-202ENST00000593706 SPATA31D1Q6ZQQ2 1576 aa23.52■■□□□ 1.36
PNKP-202ENST00000593706 A2ML1A8K2U0 1454 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms