RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 EFCAB5A4FU69 1503 aa17.3■□□□□ 0.36
VPS4B-207ENST00000591519 SLC4A1APQ9BWU0 796 aaKnown RBP17.29■□□□□ 0.36
VPS4B-207ENST00000591519 NEO1Q92859 1461 aa17.29■□□□□ 0.36
VPS4B-207ENST00000591519 RAPGEF3O95398 923 aa17.25■□□□□ 0.35
VPS4B-207ENST00000591519 UBTFP17480 764 aaKnown RBP17.23■□□□□ 0.35
VPS4B-207ENST00000591519 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.18■□□□□ 0.34
VPS4B-207ENST00000591519 FMN1Q68DA7 1419 aa17.17■□□□□ 0.34
VPS4B-207ENST00000591519 AKNAQ7Z591 1439 aa17.17■□□□□ 0.34
VPS4B-207ENST00000591519 FRMPD1Q5SYB0 1578 aa17.16■□□□□ 0.34
VPS4B-207ENST00000591519 DENND4BO75064 1496 aaPredicted RBP17.16■□□□□ 0.34
VPS4B-207ENST00000591519 ARHGAP35Q9NRY4 1499 aa17.16■□□□□ 0.34
VPS4B-207ENST00000591519 FANCAO15360 1455 aa17.15■□□□□ 0.34
VPS4B-207ENST00000591519 POTEHQ6S545 545 aa17.14■□□□□ 0.33
VPS4B-207ENST00000591519 EHMT2Q96KQ7 1210 aa17.14■□□□□ 0.33
VPS4B-207ENST00000591519 HECW2Q9P2P5 1572 aa17.14■□□□□ 0.33
VPS4B-207ENST00000591519 CDK13Q14004 1512 aaKnown RBP17.13■□□□□ 0.33
VPS4B-207ENST00000591519 ADAMTSL3P82987 1691 aa17.13■□□□□ 0.33
VPS4B-207ENST00000591519 CDK11AQ9UQ88 783 aaPredicted RBP17.12■□□□□ 0.33
VPS4B-207ENST00000591519 PLCH2O75038 1416 aa17.12■□□□□ 0.33
VPS4B-207ENST00000591519 TTC37Q6PGP7 1564 aa17.11■□□□□ 0.33
VPS4B-207ENST00000591519 CFAP74Q9C0B2 1584 aa17.11■□□□□ 0.33
VPS4B-207ENST00000591519 RICTORQ6R327 1708 aa17.11■□□□□ 0.33
VPS4B-207ENST00000591519 FOXD4L1Q9NU39 408 aa17.1■□□□□ 0.33
VPS4B-207ENST00000591519 POLA2Q14181 598 aa17.09■□□□□ 0.33
VPS4B-207ENST00000591519 ATP1B4Q9UN42 357 aaPredicted RBP17.09■□□□□ 0.33
VPS4B-207ENST00000591519 PTPRMP28827 1452 aa17.09■□□□□ 0.33
VPS4B-207ENST00000591519 HECW1Q76N89 1606 aa17.08■□□□□ 0.32
VPS4B-207ENST00000591519 BCORL1Q5H9F3 1711 aa17.07■□□□□ 0.32
VPS4B-207ENST00000591519 MAGI2Q86UL8 1455 aa17.07■□□□□ 0.32
VPS4B-207ENST00000591519 ARID4BQ4LE39 1312 aaPredicted RBP17.07■□□□□ 0.32
VPS4B-207ENST00000591519 ZMYM4Q5VZL5 1548 aa17.06■□□□□ 0.32
VPS4B-207ENST00000591519 EFCAB2Q5VUJ9 269 aa17.06■□□□□ 0.32
VPS4B-207ENST00000591519 ARHGEF40Q8TER5 1519 aa17.06■□□□□ 0.32
VPS4B-207ENST00000591519 SCAPERQ9BY12 1400 aa17.05■□□□□ 0.32
VPS4B-207ENST00000591519 TROQ12816 1431 aaPredicted RBP17.04■□□□□ 0.32
VPS4B-207ENST00000591519 ILDR1Q86SU0 546 aaPredicted RBP17.02■□□□□ 0.32
VPS4B-207ENST00000591519 ATF5Q9Y2D1 282 aaPredicted RBP17.01■□□□□ 0.31
VPS4B-207ENST00000591519 POGZQ7Z3K3 1410 aa17.01■□□□□ 0.31
VPS4B-207ENST00000591519 YEATS2Q9ULM3 1422 aa17.01■□□□□ 0.31
VPS4B-207ENST00000591519 ZFYVE16Q7Z3T8 1539 aa17.01■□□□□ 0.31
VPS4B-207ENST00000591519 MADDQ8WXG6 1647 aa16.99■□□□□ 0.31
VPS4B-207ENST00000591519 MYO5CQ9NQX4 1742 aa16.99■□□□□ 0.31
VPS4B-207ENST00000591519 CLIP1P30622 1438 aa16.99■□□□□ 0.31
VPS4B-207ENST00000591519 CASKIN1Q8WXD9 1431 aa16.99■□□□□ 0.31
VPS4B-207ENST00000591519 KIF14Q15058 1648 aa16.98■□□□□ 0.31
VPS4B-207ENST00000591519 LRRIQ1Q96JM4 1722 aa16.98■□□□□ 0.31
VPS4B-207ENST00000591519 ATP10AO60312 1499 aa16.96■□□□□ 0.31
VPS4B-207ENST00000591519 SIGLEC1Q9BZZ2 1709 aa16.95■□□□□ 0.3
VPS4B-207ENST00000591519 CCDC18Q5T9S5 1454 aa16.94■□□□□ 0.3
VPS4B-207ENST00000591519 AFAP1Q8N556 730 aa16.94■□□□□ 0.3
VPS4B-207ENST00000591519 ZNF518AQ6AHZ1 1483 aa16.93■□□□□ 0.3
VPS4B-207ENST00000591519 ARHGAP5Q13017 1502 aa16.93■□□□□ 0.3
VPS4B-207ENST00000591519 RIMS1Q86UR5 1692 aaKnown RBP16.92■□□□□ 0.3
VPS4B-207ENST00000591519 LMTK3Q96Q04 1460 aa16.92■□□□□ 0.3
VPS4B-207ENST00000591519 PCF11O94913 1555 aaKnown RBP16.91■□□□□ 0.3
VPS4B-207ENST00000591519 C9orf84Q5VXU9 1444 aa16.91■□□□□ 0.3
VPS4B-207ENST00000591519 ZBTB22O15209 634 aa16.91■□□□□ 0.3
VPS4B-207ENST00000591519 CDC42BPBQ9Y5S2 1711 aa16.9■□□□□ 0.3
VPS4B-207ENST00000591519 KDM5CP41229 1560 aa16.9■□□□□ 0.3
VPS4B-207ENST00000591519 MLECQ14165 292 aa16.9■□□□□ 0.3
VPS4B-207ENST00000591519 RBM42Q9BTD8 480 aaKnown RBP16.9■□□□□ 0.3
VPS4B-207ENST00000591519 FYCO1Q9BQS8 1478 aa16.89■□□□□ 0.29
VPS4B-207ENST00000591519 MLH3Q9UHC1 1453 aa16.88■□□□□ 0.29
VPS4B-207ENST00000591519 ARHGEF12Q9NZN5 1544 aa16.87■□□□□ 0.29
VPS4B-207ENST00000591519 PREX2Q70Z35 1606 aa16.86■□□□□ 0.29
VPS4B-207ENST00000591519 TRAPPC8Q9Y2L5 1435 aa16.84■□□□□ 0.29
VPS4B-207ENST00000591519 REREQ9P2R6 1566 aa16.84■□□□□ 0.29
VPS4B-207ENST00000591519 FER1L4A9Z1Z3 1794 aa16.84■□□□□ 0.29
VPS4B-207ENST00000591519 ABCC1P33527 1531 aa16.83■□□□□ 0.28
VPS4B-207ENST00000591519 MYT1LQ9UL68 1186 aa16.83■□□□□ 0.28
VPS4B-207ENST00000591519 HSPA2P54652 639 aa16.82■□□□□ 0.28
VPS4B-207ENST00000591519 CDC42BPAQ5VT25 1732 aa16.82■□□□□ 0.28
VPS4B-207ENST00000591519 DIP2CQ9Y2E4 1556 aa16.81■□□□□ 0.28
VPS4B-207ENST00000591519 FBXO41Q8TF61 875 aa16.81■□□□□ 0.28
VPS4B-207ENST00000591519 AGLP35573 1532 aa16.8■□□□□ 0.28
VPS4B-207ENST00000591519 GPATCH8Q9UKJ3 1502 aaKnown RBP16.8■□□□□ 0.28
VPS4B-207ENST00000591519 CEBPAP49715 358 aaPredicted RBP16.79■□□□□ 0.28
VPS4B-207ENST00000591519 ITSN2Q9NZM3 1697 aa16.78■□□□□ 0.28
VPS4B-207ENST00000591519 ABCA6Q8N139 1617 aa16.78■□□□□ 0.28
VPS4B-207ENST00000591519 SETD1BQ9UPS6 1966 aaKnown RBP16.77■□□□□ 0.28
VPS4B-207ENST00000591519 KIAA1107Q9UPP5 1409 aa16.77■□□□□ 0.27
VPS4B-207ENST00000591519 KIDINS220Q9ULH0 1771 aa16.77■□□□□ 0.27
VPS4B-207ENST00000591519 CFDP1Q9UEE9 299 aaPredicted RBP16.76■□□□□ 0.27
VPS4B-207ENST00000591519 ZNF777Q9ULD5 760 aaPredicted RBP16.76■□□□□ 0.27
VPS4B-207ENST00000591519 HNRNPMP52272 730 aaKnown RBP eCLIP16.75■□□□□ 0.27
VPS4B-207ENST00000591519 SAMD9LQ8IVG5 1584 aa16.75■□□□□ 0.27
VPS4B-207ENST00000591519 MTUS2Q5JR59 1369 aa16.74■□□□□ 0.27
VPS4B-207ENST00000591519 CCNB3Q8WWL7 1395 aa16.74■□□□□ 0.27
VPS4B-207ENST00000591519 PLEKHH2Q8IVE3 1493 aa16.73■□□□□ 0.27
VPS4B-207ENST00000591519 SPAG9O60271 1321 aaKnown RBP16.72■□□□□ 0.27
VPS4B-207ENST00000591519 PREX1Q8TCU6 1659 aa16.72■□□□□ 0.27
VPS4B-207ENST00000591519 SYCP2Q9BX26 1530 aa16.7■□□□□ 0.26
VPS4B-207ENST00000591519 ESF1Q9H501 851 aaKnown RBP16.7■□□□□ 0.26
VPS4B-207ENST00000591519 CNTLNQ9NXG0 1405 aa16.7■□□□□ 0.26
VPS4B-207ENST00000591519 CEP162Q5TB80 1403 aa16.69■□□□□ 0.26
VPS4B-207ENST00000591519 UHRF1BP1Q6BDS2 1440 aa16.69■□□□□ 0.26
VPS4B-207ENST00000591519 C3P01024 1663 aa16.68■□□□□ 0.26
VPS4B-207ENST00000591519 ZNF644Q9H582 1327 aaPredicted RBP16.66■□□□□ 0.26
VPS4B-207ENST00000591519 ATP7AQ04656 1500 aa16.65■□□□□ 0.26
VPS4B-207ENST00000591519 CERKQ8TCT0 537 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms