RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 YEATS2Q9ULM3 1422 aa23.08■■□□□ 1.29
VMP1-209ENST00000588915 LMTK3Q96Q04 1460 aa23.07■■□□□ 1.28
VMP1-209ENST00000588915 FBXO41Q8TF61 875 aa23.07■■□□□ 1.28
VMP1-209ENST00000588915 RIMS1Q86UR5 1692 aaKnown RBP23.06■■□□□ 1.28
VMP1-209ENST00000588915 EHMT2Q96KQ7 1210 aa23.04■■□□□ 1.28
VMP1-209ENST00000588915 TROQ12816 1431 aaPredicted RBP23.03■■□□□ 1.28
VMP1-209ENST00000588915 ATP10AO60312 1499 aa23.03■■□□□ 1.28
VMP1-209ENST00000588915 MYO5CQ9NQX4 1742 aa23.02■■□□□ 1.28
VMP1-209ENST00000588915 CLIP1P30622 1438 aa23■■□□□ 1.27
VMP1-209ENST00000588915 KIF14Q15058 1648 aa22.99■■□□□ 1.27
VMP1-209ENST00000588915 MLECQ14165 292 aa22.98■■□□□ 1.27
VMP1-209ENST00000588915 SIGLEC1Q9BZZ2 1709 aa22.98■■□□□ 1.27
VMP1-209ENST00000588915 C9orf84Q5VXU9 1444 aa22.98■■□□□ 1.27
VMP1-209ENST00000588915 ZNF518AQ6AHZ1 1483 aa22.98■■□□□ 1.27
VMP1-209ENST00000588915 ARHGEF12Q9NZN5 1544 aa22.94■■□□□ 1.26
VMP1-209ENST00000588915 ARHGAP5Q13017 1502 aa22.93■■□□□ 1.26
VMP1-209ENST00000588915 AFAP1Q8N556 730 aa22.93■■□□□ 1.26
VMP1-209ENST00000588915 FER1L4A9Z1Z3 1794 aa22.92■■□□□ 1.26
VMP1-209ENST00000588915 HSPA2P54652 639 aa22.92■■□□□ 1.26
VMP1-209ENST00000588915 KDM5CP41229 1560 aa22.92■■□□□ 1.26
VMP1-209ENST00000588915 CASKIN1Q8WXD9 1431 aa22.91■■□□□ 1.26
VMP1-209ENST00000588915 PLPPR3Q6T4P5 718 aa22.91■■□□□ 1.26
VMP1-209ENST00000588915 CCDC18Q5T9S5 1454 aa22.91■■□□□ 1.26
VMP1-209ENST00000588915 LRRIQ1Q96JM4 1722 aa22.88■■□□□ 1.25
VMP1-209ENST00000588915 MLH3Q9UHC1 1453 aa22.87■■□□□ 1.25
VMP1-209ENST00000588915 REREQ9P2R6 1566 aa22.85■■□□□ 1.25
VMP1-209ENST00000588915 MYT1LQ9UL68 1186 aa22.85■■□□□ 1.25
VMP1-209ENST00000588915 CDC42BPBQ9Y5S2 1711 aa22.85■■□□□ 1.25
VMP1-209ENST00000588915 PREX2Q70Z35 1606 aa22.81■■□□□ 1.24
VMP1-209ENST00000588915 DIP2CQ9Y2E4 1556 aa22.8■■□□□ 1.24
VMP1-209ENST00000588915 SETD1BQ9UPS6 1966 aaKnown RBP22.8■■□□□ 1.24
VMP1-209ENST00000588915 CEBPAP49715 358 aaPredicted RBP22.8■■□□□ 1.24
VMP1-209ENST00000588915 AGLP35573 1532 aa22.79■■□□□ 1.24
VMP1-209ENST00000588915 PREX1Q8TCU6 1659 aa22.79■■□□□ 1.24
VMP1-209ENST00000588915 TRAPPC8Q9Y2L5 1435 aa22.79■■□□□ 1.24
VMP1-209ENST00000588915 FYCO1Q9BQS8 1478 aa22.79■■□□□ 1.24
VMP1-209ENST00000588915 ABCC1P33527 1531 aa22.78■■□□□ 1.24
VMP1-209ENST00000588915 DMRT2Q9Y5R5 561 aa22.78■■□□□ 1.24
VMP1-209ENST00000588915 CERKQ8TCT0 537 aa22.77■■□□□ 1.24
VMP1-209ENST00000588915 ABCA6Q8N139 1617 aa22.75■■□□□ 1.23
VMP1-209ENST00000588915 UHRF1BP1Q6BDS2 1440 aa22.74■■□□□ 1.23
VMP1-209ENST00000588915 ESF1Q9H501 851 aaKnown RBP22.74■■□□□ 1.23
VMP1-209ENST00000588915 ITSN2Q9NZM3 1697 aa22.73■■□□□ 1.23
VMP1-209ENST00000588915 CDC42BPAQ5VT25 1732 aa22.72■■□□□ 1.23
VMP1-209ENST00000588915 CNTLNQ9NXG0 1405 aa22.7■■□□□ 1.22
VMP1-209ENST00000588915 KIDINS220Q9ULH0 1771 aa22.7■■□□□ 1.22
VMP1-209ENST00000588915 GPATCH8Q9UKJ3 1502 aaKnown RBP22.69■■□□□ 1.22
VMP1-209ENST00000588915 KIAA1107Q9UPP5 1409 aa22.67■■□□□ 1.22
VMP1-209ENST00000588915 ZNF777Q9ULD5 760 aaPredicted RBP22.67■■□□□ 1.22
VMP1-209ENST00000588915 SAMD9LQ8IVG5 1584 aa22.66■■□□□ 1.22
VMP1-209ENST00000588915 C3P01024 1663 aa22.65■■□□□ 1.22
VMP1-209ENST00000588915 SPAG9O60271 1321 aaKnown RBP22.65■■□□□ 1.22
VMP1-209ENST00000588915 PLEKHH2Q8IVE3 1493 aa22.65■■□□□ 1.22
VMP1-209ENST00000588915 CFDP1Q9UEE9 299 aaPredicted RBP22.64■■□□□ 1.21
VMP1-209ENST00000588915 STRCQ7RTU9 1775 aa22.63■■□□□ 1.21
VMP1-209ENST00000588915 HNRNPMP52272 730 aaKnown RBP eCLIP22.63■■□□□ 1.21
VMP1-209ENST00000588915 PTPRTO14522 1441 aa22.63■■□□□ 1.21
VMP1-209ENST00000588915 CCNB3Q8WWL7 1395 aa22.61■■□□□ 1.21
VMP1-209ENST00000588915 SYCP2Q9BX26 1530 aa22.6■■□□□ 1.21
VMP1-209ENST00000588915 NPATQ14207 1427 aa22.59■■□□□ 1.21
VMP1-209ENST00000588915 MTUS2Q5JR59 1369 aa22.59■■□□□ 1.21
VMP1-209ENST00000588915 ZMYM3Q14202 1370 aa22.57■■□□□ 1.2
VMP1-209ENST00000588915 MROH2AA6NES4 1674 aa22.56■■□□□ 1.2
VMP1-209ENST00000588915 PPP6R1Q9UPN7 881 aa22.56■■□□□ 1.2
VMP1-209ENST00000588915 ATP7AQ04656 1500 aa22.56■■□□□ 1.2
VMP1-209ENST00000588915 A2MP01023 1474 aa22.54■■□□□ 1.2
VMP1-209ENST00000588915 INO80Q9ULG1 1556 aaPredicted RBP22.52■■□□□ 1.2
VMP1-209ENST00000588915 PLXNC1O60486 1568 aa22.51■■□□□ 1.19
VMP1-209ENST00000588915 NCOA1Q15788 1441 aa22.51■■□□□ 1.19
VMP1-209ENST00000588915 SUPT6HQ7KZ85 1726 aaKnown RBP22.49■■□□□ 1.19
VMP1-209ENST00000588915 RTEL1-TNFRSF6BF6WH68 1400 aa22.48■■□□□ 1.19
VMP1-209ENST00000588915 CEP162Q5TB80 1403 aa22.48■■□□□ 1.19
VMP1-209ENST00000588915 EHBP1L1Q8N3D4 1523 aa22.47■■□□□ 1.19
VMP1-209ENST00000588915 GGT6Q6P531 493 aa22.47■■□□□ 1.19
VMP1-209ENST00000588915 MBD5Q9P267 1494 aa22.47■■□□□ 1.19
VMP1-209ENST00000588915 ZNF644Q9H582 1327 aaPredicted RBP22.45■■□□□ 1.18
VMP1-209ENST00000588915 IQSEC2Q5JU85 1478 aa22.45■■□□□ 1.18
VMP1-209ENST00000588915 TIAM1Q13009 1591 aa22.45■■□□□ 1.18
VMP1-209ENST00000588915 RSPH4AQ5TD94 716 aa22.44■■□□□ 1.18
VMP1-209ENST00000588915 ADGBQ8N7X0 1667 aa22.44■■□□□ 1.18
VMP1-209ENST00000588915 CAMSAP1Q5T5Y3 1602 aa22.43■■□□□ 1.18
VMP1-209ENST00000588915 LTBP4Q8N2S1 1624 aa22.43■■□□□ 1.18
VMP1-209ENST00000588915 PTPRKQ15262 1439 aa22.43■■□□□ 1.18
VMP1-209ENST00000588915 DHX29Q7Z478 1369 aaKnown RBP22.42■■□□□ 1.18
VMP1-209ENST00000588915 PKD2Q13563 968 aa22.42■■□□□ 1.18
VMP1-209ENST00000588915 CLTCQ00610 1675 aaKnown RBP22.42■■□□□ 1.18
VMP1-209ENST00000588915 PLA2R1Q13018 1463 aa22.41■■□□□ 1.18
VMP1-209ENST00000588915 NCKAP5LQ9HCH0 1330 aa22.37■■□□□ 1.17
VMP1-209ENST00000588915 ZNF142P52746 1687 aaPredicted RBP22.37■■□□□ 1.17
VMP1-209ENST00000588915 CEP170BQ9Y4F5 1589 aaPredicted RBP22.36■■□□□ 1.17
VMP1-209ENST00000588915 MYO3AQ8NEV4 1616 aa22.35■■□□□ 1.17
VMP1-209ENST00000588915 TCOF1Q13428 1488 aaKnown RBP22.34■■□□□ 1.17
VMP1-209ENST00000588915 CCDC141Q6ZP82 1450 aa22.34■■□□□ 1.17
VMP1-209ENST00000588915 NCOA2Q15596 1464 aa22.34■■□□□ 1.17
VMP1-209ENST00000588915 FAM135AQ9P2D6 1515 aa22.33■■□□□ 1.17
VMP1-209ENST00000588915 A2ML1A8K2U0 1454 aa22.31■■□□□ 1.16
VMP1-209ENST00000588915 KIF3BO15066 747 aa22.31■■□□□ 1.16
VMP1-209ENST00000588915 CAMSAP2Q08AD1 1489 aa22.29■■□□□ 1.16
VMP1-209ENST00000588915 TSPY4P0CV99 314 aa22.29■■□□□ 1.16
VMP1-209ENST00000588915 TSPY10P0CW01 314 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms