RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 TCOF1Q13428 1488 aaKnown RBP17.24■□□□□ 0.35
VMP1-207ENST00000588131 MYO5CQ9NQX4 1742 aa17.24■□□□□ 0.35
VMP1-207ENST00000588131 ABCA9Q8IUA7 1624 aa17.24■□□□□ 0.35
VMP1-207ENST00000588131 CDC42BPBQ9Y5S2 1711 aa17.24■□□□□ 0.35
VMP1-207ENST00000588131 FAM50AQ14320 339 aaKnown RBP17.22■□□□□ 0.35
VMP1-207ENST00000588131 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.21■□□□□ 0.35
VMP1-207ENST00000588131 CFDP1Q9UEE9 299 aaPredicted RBP17.19■□□□□ 0.34
VMP1-207ENST00000588131 CAMSAP2Q08AD1 1489 aa17.18■□□□□ 0.34
VMP1-207ENST00000588131 ARHGAP5Q13017 1502 aa17.18■□□□□ 0.34
VMP1-207ENST00000588131 PLCH2O75038 1416 aa17.18■□□□□ 0.34
VMP1-207ENST00000588131 ZNF644Q9H582 1327 aaPredicted RBP17.18■□□□□ 0.34
VMP1-207ENST00000588131 SAMD9LQ8IVG5 1584 aa17.17■□□□□ 0.34
VMP1-207ENST00000588131 DIP2BQ9P265 1576 aa17.16■□□□□ 0.34
VMP1-207ENST00000588131 ITGAEP38570 1179 aa17.16■□□□□ 0.34
VMP1-207ENST00000588131 ZNF777Q9ULD5 760 aaPredicted RBP17.15■□□□□ 0.34
VMP1-207ENST00000588131 ARAP3Q8WWN8 1544 aa17.15■□□□□ 0.34
VMP1-207ENST00000588131 GLI2P10070 1586 aa17.15■□□□□ 0.34
VMP1-207ENST00000588131 DNMT1P26358 1616 aaKnown RBP17.13■□□□□ 0.33
VMP1-207ENST00000588131 MAP3K4Q9Y6R4 1608 aa17.12■□□□□ 0.33
VMP1-207ENST00000588131 PTPRKQ15262 1439 aa17.12■□□□□ 0.33
VMP1-207ENST00000588131 CD109Q6YHK3 1445 aa17.11■□□□□ 0.33
VMP1-207ENST00000588131 DAPK1P53355 1430 aa17.1■□□□□ 0.33
VMP1-207ENST00000588131 ABCC5O15440 1437 aa17.09■□□□□ 0.33
VMP1-207ENST00000588131 CROCC2H7BZ55 1655 aa17.09■□□□□ 0.33
VMP1-207ENST00000588131 KIF13AQ9H1H9 1805 aa17.09■□□□□ 0.33
VMP1-207ENST00000588131 ABCC1P33527 1531 aa17.08■□□□□ 0.32
VMP1-207ENST00000588131 SYCP2Q9BX26 1530 aa17.08■□□□□ 0.32
VMP1-207ENST00000588131 FANCAO15360 1455 aa17.08■□□□□ 0.32
VMP1-207ENST00000588131 EFCAB2Q5VUJ9 269 aa17.08■□□□□ 0.32
VMP1-207ENST00000588131 ARHGEF5Q12774 1597 aa17.07■□□□□ 0.32
VMP1-207ENST00000588131 MBD5Q9P267 1494 aa17.07■□□□□ 0.32
VMP1-207ENST00000588131 ARHGEF12Q9NZN5 1544 aa17.06■□□□□ 0.32
VMP1-207ENST00000588131 FAM69CQ0P6D2 419 aa17.06■□□□□ 0.32
VMP1-207ENST00000588131 PLEKHH2Q8IVE3 1493 aa17.05■□□□□ 0.32
VMP1-207ENST00000588131 HNRNPMP52272 730 aaKnown RBP eCLIP17.05■□□□□ 0.322e-7■■■■□ 25.4
VMP1-207ENST00000588131 CFAP74Q9C0B2 1584 aa17.05■□□□□ 0.32
VMP1-207ENST00000588131 KIAA1107Q9UPP5 1409 aa17.04■□□□□ 0.32
VMP1-207ENST00000588131 PPRC1Q5VV67 1664 aaKnown RBP17.04■□□□□ 0.32
VMP1-207ENST00000588131 PPP6R1Q9UPN7 881 aa17.03■□□□□ 0.32
VMP1-207ENST00000588131 CCDC141Q6ZP82 1450 aa17.03■□□□□ 0.32
VMP1-207ENST00000588131 ADGBQ8N7X0 1667 aa17.01■□□□□ 0.31
VMP1-207ENST00000588131 ADGRL1O94910 1474 aa17.01■□□□□ 0.31
VMP1-207ENST00000588131 SHANK2Q9UPX8 1470 aa17.01■□□□□ 0.31
VMP1-207ENST00000588131 PIAS4Q8N2W9 510 aaPredicted RBP17.01■□□□□ 0.31
VMP1-207ENST00000588131 CHIC2Q9UKJ5 165 aa17.01■□□□□ 0.31
VMP1-207ENST00000588131 AKNAQ7Z591 1439 aa17.01■□□□□ 0.31
VMP1-207ENST00000588131 TSPOAP1O95153 1857 aa17.01■□□□□ 0.31
VMP1-207ENST00000588131 ADRA2BP18089 450 aa17■□□□□ 0.31
VMP1-207ENST00000588131 NEO1Q92859 1461 aa16.99■□□□□ 0.31
VMP1-207ENST00000588131 TRAPPC8Q9Y2L5 1435 aa16.99■□□□□ 0.31
VMP1-207ENST00000588131 GCC2Q8IWJ2 1684 aa16.98■□□□□ 0.31
VMP1-207ENST00000588131 C9orf84Q5VXU9 1444 aa16.98■□□□□ 0.31
VMP1-207ENST00000588131 ADGRL2O95490 1459 aa16.98■□□□□ 0.31
VMP1-207ENST00000588131 MAST1Q9Y2H9 1570 aa16.98■□□□□ 0.31
VMP1-207ENST00000588131 SCAPERQ9BY12 1400 aa16.97■□□□□ 0.31
VMP1-207ENST00000588131 ROCK1Q13464 1354 aa16.97■□□□□ 0.31
VMP1-207ENST00000588131 HFM1A2PYH4 1435 aa16.96■□□□□ 0.31
VMP1-207ENST00000588131 NAIPQ13075 1403 aa16.96■□□□□ 0.31
VMP1-207ENST00000588131 SETD5Q9C0A6 1442 aa16.96■□□□□ 0.31
VMP1-207ENST00000588131 RSPH4AQ5TD94 716 aa16.96■□□□□ 0.31
VMP1-207ENST00000588131 RRP7BPQ9NSQ0 103 aa16.95■□□□□ 0.3
VMP1-207ENST00000588131 RAB3GAP2Q9H2M9 1393 aa16.94■□□□□ 0.3
VMP1-207ENST00000588131 TEX14Q8IWB6 1497 aa16.93■□□□□ 0.3
VMP1-207ENST00000588131 TSPY4P0CV99 314 aa16.93■□□□□ 0.3
VMP1-207ENST00000588131 TSPY10P0CW01 314 aa16.93■□□□□ 0.3
VMP1-207ENST00000588131 NCOA1Q15788 1441 aa16.93■□□□□ 0.3
VMP1-207ENST00000588131 KDM6BO15054 1643 aa16.92■□□□□ 0.3
VMP1-207ENST00000588131 AFAP1Q8N556 730 aa16.92■□□□□ 0.3
VMP1-207ENST00000588131 POGZQ7Z3K3 1410 aa16.92■□□□□ 0.3
VMP1-207ENST00000588131 ANKRD30AQ9BXX3 1397 aa16.91■□□□□ 0.3
VMP1-207ENST00000588131 INO80Q9ULG1 1556 aaPredicted RBP16.91■□□□□ 0.3
VMP1-207ENST00000588131 ZFYVE16Q7Z3T8 1539 aa16.91■□□□□ 0.3
VMP1-207ENST00000588131 PLXNC1O60486 1568 aa16.9■□□□□ 0.3
VMP1-207ENST00000588131 ZNF518AQ6AHZ1 1483 aa16.9■□□□□ 0.3
VMP1-207ENST00000588131 RICTORQ6R327 1708 aa16.9■□□□□ 0.3
VMP1-207ENST00000588131 KDM5CP41229 1560 aa16.89■□□□□ 0.3
VMP1-207ENST00000588131 DENND4BO75064 1496 aaPredicted RBP16.89■□□□□ 0.29
VMP1-207ENST00000588131 ATP7AQ04656 1500 aa16.88■□□□□ 0.29
VMP1-207ENST00000588131 FRMPD1Q5SYB0 1578 aa16.88■□□□□ 0.29
VMP1-207ENST00000588131 SPAG9O60271 1321 aaKnown RBP16.88■□□□□ 0.29
VMP1-207ENST00000588131 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
VMP1-207ENST00000588131 RTEL1-TNFRSF6BF6WH68 1400 aa16.87■□□□□ 0.29
VMP1-207ENST00000588131 KIDINS220Q9ULH0 1771 aa16.86■□□□□ 0.29
VMP1-207ENST00000588131 KIF15Q9NS87 1388 aa16.86■□□□□ 0.29
VMP1-207ENST00000588131 HECW2Q9P2P5 1572 aa16.85■□□□□ 0.29
VMP1-207ENST00000588131 RAPGEF3O95398 923 aa16.84■□□□□ 0.29
VMP1-207ENST00000588131 HRCP23327 699 aa16.83■□□□□ 0.28
VMP1-207ENST00000588131 MLH3Q9UHC1 1453 aa16.82■□□□□ 0.28
VMP1-207ENST00000588131 COL17A1Q9UMD9 1497 aaPredicted RBP16.82■□□□□ 0.28
VMP1-207ENST00000588131 ANKRD50Q9ULJ7 1429 aa16.82■□□□□ 0.28
VMP1-207ENST00000588131 DUOX2Q9NRD8 1548 aa16.81■□□□□ 0.28
VMP1-207ENST00000588131 ZMYM4Q5VZL5 1548 aa16.8■□□□□ 0.28
VMP1-207ENST00000588131 DHX57Q6P158 1386 aaKnown RBP16.8■□□□□ 0.28
VMP1-207ENST00000588131 ABCA6Q8N139 1617 aa16.8■□□□□ 0.28
VMP1-207ENST00000588131 MYT1LQ9UL68 1186 aa16.79■□□□□ 0.28
VMP1-207ENST00000588131 DIP2CQ9Y2E4 1556 aa16.77■□□□□ 0.28
VMP1-207ENST00000588131 CCER1Q8TC90 406 aaPredicted RBP16.77■□□□□ 0.28
VMP1-207ENST00000588131 ERBINQ96RT1 1412 aa16.77■□□□□ 0.27
VMP1-207ENST00000588131 YEATS2Q9ULM3 1422 aa16.75■□□□□ 0.27
VMP1-207ENST00000588131 UNC13BO14795 1591 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms