RNA–Protein interactions for RNA: ENST00000586253.1

SMAD4-204, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 784 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-204ENST00000586253 CREBZFQ9NS37 354 aa12.99□□□□□ -0.33
SMAD4-204ENST00000586253 FHOD3Q2V2M9 1422 aa12.98□□□□□ -0.33
SMAD4-204ENST00000586253 SPDYE4A6NLX3 237 aa12.98□□□□□ -0.33
SMAD4-204ENST00000586253 RANGAP1P46060 587 aaPredicted RBP12.98□□□□□ -0.33
SMAD4-204ENST00000586253 P3H3Q8IVL6 736 aa12.98□□□□□ -0.33
SMAD4-204ENST00000586253 PLB1Q6P1J6 1458 aa12.97□□□□□ -0.33
SMAD4-204ENST00000586253 NPM1P06748 294 aaKnown RBP eCLIP12.97□□□□□ -0.33
SMAD4-204ENST00000586253 CD44P16070 742 aaKnown RBP12.97□□□□□ -0.33
SMAD4-204ENST00000586253 MAPKBP1O60336 1514 aa12.97□□□□□ -0.33
SMAD4-204ENST00000586253 KDM5BQ9UGL1 1544 aa12.96□□□□□ -0.33
SMAD4-204ENST00000586253 CLIP1P30622 1438 aa12.95□□□□□ -0.34
SMAD4-204ENST00000586253 FMN1Q68DA7 1419 aa12.95□□□□□ -0.34
SMAD4-204ENST00000586253 POTEIP0CG38 1075 aa12.94□□□□□ -0.34
SMAD4-204ENST00000586253 RAPGEF6Q8TEU7 1601 aa12.94□□□□□ -0.34
SMAD4-204ENST00000586253 ZCCHC11Q5TAX3 1644 aaKnown RBP12.91□□□□□ -0.34
SMAD4-204ENST00000586253 LOC105371045A0A1W2PR82 267 aa12.91□□□□□ -0.34
SMAD4-204ENST00000586253 CEP162Q5TB80 1403 aa12.9□□□□□ -0.34
SMAD4-204ENST00000586253 STAG3Q9UJ98 1225 aa12.9□□□□□ -0.34
SMAD4-204ENST00000586253 NUP153P49790 1475 aaKnown RBP12.89□□□□□ -0.35
SMAD4-204ENST00000586253 ASXL2Q76L83 1435 aa12.88□□□□□ -0.35
SMAD4-204ENST00000586253 ATP10BO94823 1461 aa12.87□□□□□ -0.35
SMAD4-204ENST00000586253 ABCC10Q5T3U5 1492 aa12.87□□□□□ -0.35
SMAD4-204ENST00000586253 HECW1Q76N89 1606 aa12.87□□□□□ -0.35
SMAD4-204ENST00000586253 DIP2BQ9P265 1576 aa12.86□□□□□ -0.35
SMAD4-204ENST00000586253 WDR7Q9Y4E6 1490 aa12.85□□□□□ -0.35
SMAD4-204ENST00000586253 CASKIN1Q8WXD9 1431 aa12.85□□□□□ -0.35
SMAD4-204ENST00000586253 KIF13AQ9H1H9 1805 aa12.85□□□□□ -0.35
SMAD4-204ENST00000586253 ZNF579Q8NAF0 562 aaKnown RBP12.84□□□□□ -0.35
SMAD4-204ENST00000586253 MNX1P50219 401 aaPredicted RBP12.83□□□□□ -0.36
SMAD4-204ENST00000586253 FYCO1Q9BQS8 1478 aa12.83□□□□□ -0.36
SMAD4-204ENST00000586253 PCF11O94913 1555 aaKnown RBP12.82□□□□□ -0.36
SMAD4-204ENST00000586253 GLI2P10070 1586 aa12.82□□□□□ -0.36
SMAD4-204ENST00000586253 PROM2Q8N271 834 aa12.82□□□□□ -0.36
SMAD4-204ENST00000586253 EPRSP07814 1512 aaKnown RBP12.82□□□□□ -0.36
SMAD4-204ENST00000586253 CCDC18Q5T9S5 1454 aa12.8□□□□□ -0.36
SMAD4-204ENST00000586253 CLCN6P51797 869 aa12.8□□□□□ -0.36
SMAD4-204ENST00000586253 FAM69CQ0P6D2 419 aa12.8□□□□□ -0.36
SMAD4-204ENST00000586253 LHX8Q68G74 356 aa12.8□□□□□ -0.36
SMAD4-204ENST00000586253 ARID3CA6NKF2 412 aa12.79□□□□□ -0.36
SMAD4-204ENST00000586253 CDK13Q14004 1512 aaKnown RBP12.78□□□□□ -0.36
SMAD4-204ENST00000586253 LRRIQ1Q96JM4 1722 aa12.78□□□□□ -0.36
SMAD4-204ENST00000586253 ZRANB1Q9UGI0 708 aa12.77□□□□□ -0.37
SMAD4-204ENST00000586253 PLEKHD1A6NEE1 506 aa12.76□□□□□ -0.37
SMAD4-204ENST00000586253 ATP1B4Q9UN42 357 aaPredicted RBP12.76□□□□□ -0.37
SMAD4-204ENST00000586253 CDK11AQ9UQ88 783 aaPredicted RBP12.76□□□□□ -0.37
SMAD4-204ENST00000586253 VPS8Q8N3P4 1428 aa12.76□□□□□ -0.37
SMAD4-204ENST00000586253 MAP3K4Q9Y6R4 1608 aa12.76□□□□□ -0.37
SMAD4-204ENST00000586253 CFAP43Q8NDM7 1665 aa12.75□□□□□ -0.37
SMAD4-204ENST00000586253 ABCA9Q8IUA7 1624 aa12.73□□□□□ -0.37
SMAD4-204ENST00000586253 KCNH8Q96L42 1107 aa12.72□□□□□ -0.37
SMAD4-204ENST00000586253 TROQ12816 1431 aaPredicted RBP12.71□□□□□ -0.37
SMAD4-204ENST00000586253 MAGI3Q5TCQ9 1506 aa12.71□□□□□ -0.38
SMAD4-204ENST00000586253 CD109Q6YHK3 1445 aa12.71□□□□□ -0.38
SMAD4-204ENST00000586253 PPRC1Q5VV67 1664 aaKnown RBP12.7□□□□□ -0.38
SMAD4-204ENST00000586253 TSPOAP1O95153 1857 aa12.7□□□□□ -0.38
SMAD4-204ENST00000586253 TEX14Q8IWB6 1497 aa12.7□□□□□ -0.38
SMAD4-204ENST00000586253 GALR2O43603 387 aaPredicted RBP12.69□□□□□ -0.38
SMAD4-204ENST00000586253 KIF14Q15058 1648 aa12.69□□□□□ -0.38
SMAD4-204ENST00000586253 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.68□□□□□ -0.38
SMAD4-204ENST00000586253 MAP3K1Q13233 1512 aa12.67□□□□□ -0.38
SMAD4-204ENST00000586253 TIAM1Q13009 1591 aa12.66□□□□□ -0.38
SMAD4-204ENST00000586253 TTC37Q6PGP7 1564 aa12.66□□□□□ -0.38
SMAD4-204ENST00000586253 EHBP1L1Q8N3D4 1523 aa12.65□□□□□ -0.38
SMAD4-204ENST00000586253 ARAP3Q8WWN8 1544 aa12.64□□□□□ -0.39
SMAD4-204ENST00000586253 PHF12Q96QT6 1004 aa12.64□□□□□ -0.39
SMAD4-204ENST00000586253 MTUS2Q5JR59 1369 aa12.64□□□□□ -0.39
SMAD4-204ENST00000586253 PHLDB1Q86UU1 1377 aa12.64□□□□□ -0.39
SMAD4-204ENST00000586253 NEO1Q92859 1461 aa12.63□□□□□ -0.39
SMAD4-204ENST00000586253 MYO5CQ9NQX4 1742 aa12.62□□□□□ -0.39
SMAD4-204ENST00000586253 CFAP74Q9C0B2 1584 aa12.62□□□□□ -0.39
SMAD4-204ENST00000586253 DCBLD2Q96PD2 775 aa12.62□□□□□ -0.39
SMAD4-204ENST00000586253 KDM6BO15054 1643 aa12.62□□□□□ -0.39
SMAD4-204ENST00000586253 PLCH2O75038 1416 aa12.62□□□□□ -0.39
SMAD4-204ENST00000586253 LRRC9Q6ZRR7 1453 aa12.6□□□□□ -0.39
SMAD4-204ENST00000586253 FANCAO15360 1455 aa12.59□□□□□ -0.39
SMAD4-204ENST00000586253 PREX2Q70Z35 1606 aa12.59□□□□□ -0.39
SMAD4-204ENST00000586253 SUPT6HQ7KZ85 1726 aaKnown RBP12.58□□□□□ -0.4
SMAD4-204ENST00000586253 CDC42BPAQ5VT25 1732 aa12.57□□□□□ -0.4
SMAD4-204ENST00000586253 CDC42BPBQ9Y5S2 1711 aa12.57□□□□□ -0.4
SMAD4-204ENST00000586253 COL17A1Q9UMD9 1497 aaPredicted RBP12.56□□□□□ -0.4
SMAD4-204ENST00000586253 ARHGAP5Q13017 1502 aa12.56□□□□□ -0.4
SMAD4-204ENST00000586253 GPATCH8Q9UKJ3 1502 aaKnown RBP12.56□□□□□ -0.4
SMAD4-204ENST00000586253 AKNAQ7Z591 1439 aa12.55□□□□□ -0.4
SMAD4-204ENST00000586253 NCOA2Q15596 1464 aa12.55□□□□□ -0.4
SMAD4-204ENST00000586253 EFCAB2Q5VUJ9 269 aa12.55□□□□□ -0.4
SMAD4-204ENST00000586253 CCNB3Q8WWL7 1395 aa12.55□□□□□ -0.4
SMAD4-204ENST00000586253 ITSN2Q9NZM3 1697 aa12.54□□□□□ -0.4
SMAD4-204ENST00000586253 KANK4Q5T7N3 995 aaPredicted RBP12.53□□□□□ -0.4
SMAD4-204ENST00000586253 ADGRL1O94910 1474 aa12.53□□□□□ -0.4
SMAD4-204ENST00000586253 POTEB2H3BUK9 544 aa12.52□□□□□ -0.41
SMAD4-204ENST00000586253 PAK3O75914 559 aaPredicted RBP12.52□□□□□ -0.41
SMAD4-204ENST00000586253 PELP1Q8IZL8 1130 aaKnown RBP12.52□□□□□ -0.41
SMAD4-204ENST00000586253 DENND4BO75064 1496 aaPredicted RBP12.51□□□□□ -0.41
SMAD4-204ENST00000586253 RICTORQ6R327 1708 aa12.51□□□□□ -0.41
SMAD4-204ENST00000586253 ABCC1P33527 1531 aa12.5□□□□□ -0.41
SMAD4-204ENST00000586253 FRMPD1Q5SYB0 1578 aa12.5□□□□□ -0.41
SMAD4-204ENST00000586253 PLEKHH2Q8IVE3 1493 aa12.49□□□□□ -0.41
SMAD4-204ENST00000586253 POGZQ7Z3K3 1410 aa12.49□□□□□ -0.41
SMAD4-204ENST00000586253 SCAPERQ9BY12 1400 aa12.49□□□□□ -0.41
SMAD4-204ENST00000586253 CFDP1Q9UEE9 299 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms