RNA–Protein interactions for RNA: ENST00000586134.5

ZNF540-203, Transcript of zinc finger protein 540, humanhuman

TSL 5

Gene ZNF540, Length 2,038 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-203ENST00000586134 ARID3CA6NKF2 412 aa14.37□□□□□ -0.11
ZNF540-203ENST00000586134 KDM4FA0A1W2PPD8 638 aa14.37□□□□□ -0.11
ZNF540-203ENST00000586134 TTC37Q6PGP7 1564 aa14.36□□□□□ -0.11
ZNF540-203ENST00000586134 LRRIQ1Q96JM4 1722 aa14.36□□□□□ -0.11
ZNF540-203ENST00000586134 ADGRL1O94910 1474 aa14.35□□□□□ -0.11
ZNF540-203ENST00000586134 CDK11AQ9UQ88 783 aaPredicted RBP14.35□□□□□ -0.11
ZNF540-203ENST00000586134 CASKIN1Q8WXD9 1431 aa14.35□□□□□ -0.11
ZNF540-203ENST00000586134 RICTORQ6R327 1708 aa14.35□□□□□ -0.11
ZNF540-203ENST00000586134 CCDC18Q5T9S5 1454 aa14.35□□□□□ -0.11
ZNF540-203ENST00000586134 FRMPD1Q5SYB0 1578 aa14.34□□□□□ -0.11
ZNF540-203ENST00000586134 MYO5CQ9NQX4 1742 aa14.34□□□□□ -0.11
ZNF540-203ENST00000586134 KIF14Q15058 1648 aa14.33□□□□□ -0.12
ZNF540-203ENST00000586134 FANCAO15360 1455 aa14.32□□□□□ -0.12
ZNF540-203ENST00000586134 FYCO1Q9BQS8 1478 aa14.32□□□□□ -0.12
ZNF540-203ENST00000586134 TROQ12816 1431 aaPredicted RBP14.32□□□□□ -0.12
ZNF540-203ENST00000586134 PCF11O94913 1555 aaKnown RBP14.32□□□□□ -0.12
ZNF540-203ENST00000586134 PLCH2O75038 1416 aa14.31□□□□□ -0.12
ZNF540-203ENST00000586134 AKNAQ7Z591 1439 aa14.31□□□□□ -0.12
ZNF540-203ENST00000586134 ZMYM4Q5VZL5 1548 aa14.31□□□□□ -0.12
ZNF540-203ENST00000586134 CLIP1P30622 1438 aa14.3□□□□□ -0.12
ZNF540-203ENST00000586134 DENND4BO75064 1496 aaPredicted RBP14.3□□□□□ -0.12
ZNF540-203ENST00000586134 PKNOX2Q96KN3 472 aa14.3□□□□□ -0.12
ZNF540-203ENST00000586134 ARHGEF40Q8TER5 1519 aa14.29□□□□□ -0.12
ZNF540-203ENST00000586134 MAGI2Q86UL8 1455 aa14.28□□□□□ -0.12
ZNF540-203ENST00000586134 YTHDC1Q96MU7 727 aaKnown RBP14.27□□□□□ -0.13
ZNF540-203ENST00000586134 SALL2Q9Y467 1007 aaPredicted RBP14.27□□□□□ -0.13
ZNF540-203ENST00000586134 EHMT2Q96KQ7 1210 aa14.26□□□□□ -0.13
ZNF540-203ENST00000586134 ADAMTSL3P82987 1691 aa14.25□□□□□ -0.13
ZNF540-203ENST00000586134 PREX2Q70Z35 1606 aa14.24□□□□□ -0.13
ZNF540-203ENST00000586134 RAPGEF3O95398 923 aa14.24□□□□□ -0.13
ZNF540-203ENST00000586134 CDC42BPBQ9Y5S2 1711 aa14.24□□□□□ -0.13
ZNF540-203ENST00000586134 BCORL1Q5H9F3 1711 aa14.23□□□□□ -0.13
ZNF540-203ENST00000586134 POGZQ7Z3K3 1410 aa14.23□□□□□ -0.13
ZNF540-203ENST00000586134 ZNF316A6NFI3 1004 aaPredicted RBP14.23□□□□□ -0.13
ZNF540-203ENST00000586134 EFCAB2Q5VUJ9 269 aa14.22□□□□□ -0.13
ZNF540-203ENST00000586134 PODXL2Q9NZ53 605 aa14.22□□□□□ -0.13
ZNF540-203ENST00000586134 ATP1B4Q9UN42 357 aaPredicted RBP14.22□□□□□ -0.13
ZNF540-203ENST00000586134 ZFYVE16Q7Z3T8 1539 aa14.21□□□□□ -0.13
ZNF540-203ENST00000586134 CDC42BPAQ5VT25 1732 aa14.2□□□□□ -0.14
ZNF540-203ENST00000586134 SCAPERQ9BY12 1400 aa14.2□□□□□ -0.14
ZNF540-203ENST00000586134 KDM5CP41229 1560 aa14.2□□□□□ -0.14
ZNF540-203ENST00000586134 ARHGAP5Q13017 1502 aa14.19□□□□□ -0.14
ZNF540-203ENST00000586134 DEKP35659 375 aaKnown RBP14.19□□□□□ -0.14
ZNF540-203ENST00000586134 ZNF518AQ6AHZ1 1483 aa14.19□□□□□ -0.14
ZNF540-203ENST00000586134 RBM19Q9Y4C8 960 aaKnown RBP14.17□□□□□ -0.14
ZNF540-203ENST00000586134 CEP162Q5TB80 1403 aa14.17□□□□□ -0.14
ZNF540-203ENST00000586134 LOC105371045A0A1W2PR82 267 aa14.17□□□□□ -0.14
ZNF540-203ENST00000586134 PLEKHG5O94827 1062 aa14.17□□□□□ -0.14
ZNF540-203ENST00000586134 ITSN2Q9NZM3 1697 aa14.16□□□□□ -0.14
ZNF540-203ENST00000586134 ABCC1P33527 1531 aa14.16□□□□□ -0.14
ZNF540-203ENST00000586134 REREQ9P2R6 1566 aa14.16□□□□□ -0.14
ZNF540-203ENST00000586134 CCER1Q8TC90 406 aaPredicted RBP14.15□□□□□ -0.14
ZNF540-203ENST00000586134 HECW2Q9P2P5 1572 aa14.14□□□□□ -0.15
ZNF540-203ENST00000586134 FANCIQ9NVI1 1328 aa14.13□□□□□ -0.15
ZNF540-203ENST00000586134 ATP10AO60312 1499 aa14.13□□□□□ -0.15
ZNF540-203ENST00000586134 MLH3Q9UHC1 1453 aa14.13□□□□□ -0.15
ZNF540-203ENST00000586134 MADDQ8WXG6 1647 aa14.13□□□□□ -0.15
ZNF540-203ENST00000586134 PTPRMP28827 1452 aa14.13□□□□□ -0.15
ZNF540-203ENST00000586134 EHBP1L1Q8N3D4 1523 aa14.13□□□□□ -0.15
ZNF540-203ENST00000586134 YEATS2Q9ULM3 1422 aa14.13□□□□□ -0.15
ZNF540-203ENST00000586134 C9orf84Q5VXU9 1444 aa14.12□□□□□ -0.15
ZNF540-203ENST00000586134 SIGLEC1Q9BZZ2 1709 aa14.12□□□□□ -0.15
ZNF540-203ENST00000586134 GPATCH8Q9UKJ3 1502 aaKnown RBP14.11□□□□□ -0.15
ZNF540-203ENST00000586134 PLEKHH2Q8IVE3 1493 aa14.11□□□□□ -0.15
ZNF540-203ENST00000586134 MIER1Q8N108 512 aa14.1□□□□□ -0.15
ZNF540-203ENST00000586134 DIP2CQ9Y2E4 1556 aa14.1□□□□□ -0.15
ZNF540-203ENST00000586134 KIAA1107Q9UPP5 1409 aa14.09□□□□□ -0.15
ZNF540-203ENST00000586134 FER1L4A9Z1Z3 1794 aa14.09□□□□□ -0.15
ZNF540-203ENST00000586134 SAMD9LQ8IVG5 1584 aa14.09□□□□□ -0.15
ZNF540-203ENST00000586134 ARHGEF12Q9NZN5 1544 aa14.09□□□□□ -0.15
ZNF540-203ENST00000586134 RIMS1Q86UR5 1692 aaKnown RBP14.09□□□□□ -0.15
ZNF540-203ENST00000586134 CCDC136Q96JN2 1154 aa14.08□□□□□ -0.15
ZNF540-203ENST00000586134 MTUS2Q5JR59 1369 aa14.08□□□□□ -0.16
ZNF540-203ENST00000586134 AGLP35573 1532 aa14.08□□□□□ -0.16
ZNF540-203ENST00000586134 KIDINS220Q9ULH0 1771 aa14.07□□□□□ -0.16
ZNF540-203ENST00000586134 ABCA6Q8N139 1617 aa14.07□□□□□ -0.16
ZNF540-203ENST00000586134 ARID4BQ4LE39 1312 aaPredicted RBP14.07□□□□□ -0.16
ZNF540-203ENST00000586134 MSH5O43196 834 aa14.07□□□□□ -0.16
ZNF540-203ENST00000586134 MAP3K1Q13233 1512 aa14.07□□□□□ -0.16
ZNF540-203ENST00000586134 TIAM1Q13009 1591 aa14.06□□□□□ -0.16
ZNF540-203ENST00000586134 VPS8Q8N3P4 1428 aa14.06□□□□□ -0.16
ZNF540-203ENST00000586134 SUPT6HQ7KZ85 1726 aaKnown RBP14.06□□□□□ -0.16
ZNF540-203ENST00000586134 TRAPPC8Q9Y2L5 1435 aa14.05□□□□□ -0.16
ZNF540-203ENST00000586134 CCNB3Q8WWL7 1395 aa14.05□□□□□ -0.16
ZNF540-203ENST00000586134 AFAP1Q8N556 730 aa14.03□□□□□ -0.16
ZNF540-203ENST00000586134 SYCP2Q9BX26 1530 aa14.03□□□□□ -0.16
ZNF540-203ENST00000586134 INO80Q9ULG1 1556 aaPredicted RBP14.03□□□□□ -0.16
ZNF540-203ENST00000586134 NEFLP07196 543 aa14□□□□□ -0.17
ZNF540-203ENST00000586134 CFDP1Q9UEE9 299 aaPredicted RBP14□□□□□ -0.17
ZNF540-203ENST00000586134 SETD1BQ9UPS6 1966 aaKnown RBP14□□□□□ -0.17
ZNF540-203ENST00000586134 ATP7AQ04656 1500 aa14□□□□□ -0.17
ZNF540-203ENST00000586134 ADGBQ8N7X0 1667 aa13.99□□□□□ -0.17
ZNF540-203ENST00000586134 NCOA2Q15596 1464 aa13.98□□□□□ -0.17
ZNF540-203ENST00000586134 PLXNC1O60486 1568 aa13.98□□□□□ -0.17
ZNF540-203ENST00000586134 LMTK3Q96Q04 1460 aa13.98□□□□□ -0.17
ZNF540-203ENST00000586134 RTEL1-TNFRSF6BF6WH68 1400 aa13.97□□□□□ -0.17
ZNF540-203ENST00000586134 LRRC9Q6ZRR7 1453 aa13.97□□□□□ -0.17
ZNF540-203ENST00000586134 MBD5Q9P267 1494 aa13.97□□□□□ -0.17
ZNF540-203ENST00000586134 MROH2AA6NES4 1674 aa13.97□□□□□ -0.17
ZNF540-203ENST00000586134 PREX1Q8TCU6 1659 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms