RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PTPRKQ15262 1439 aa16.45■□□□□ 0.22
LIG3-204ENST00000585740 NAIPQ13075 1403 aa16.44■□□□□ 0.22
LIG3-204ENST00000585740 ARID3CA6NKF2 412 aa16.43■□□□□ 0.22
LIG3-204ENST00000585740 DNMT1P26358 1616 aaKnown RBP16.43■□□□□ 0.22
LIG3-204ENST00000585740 KIF14Q15058 1648 aa16.43■□□□□ 0.22
LIG3-204ENST00000585740 UACAQ9BZF9 1416 aa16.43■□□□□ 0.22
LIG3-204ENST00000585740 ATP10BO94823 1461 aa16.42■□□□□ 0.22
LIG3-204ENST00000585740 TIMELESSQ9UNS1 1208 aa16.41■□□□□ 0.22
LIG3-204ENST00000585740 ROCK1Q13464 1354 aa16.4■□□□□ 0.22
LIG3-204ENST00000585740 PLEKHD1A6NEE1 506 aa16.4■□□□□ 0.22
LIG3-204ENST00000585740 DAPK1P53355 1430 aa16.38■□□□□ 0.21
LIG3-204ENST00000585740 DIEXFQ68CQ4 756 aaKnown RBP16.38■□□□□ 0.21
LIG3-204ENST00000585740 GPATCH8Q9UKJ3 1502 aaKnown RBP16.38■□□□□ 0.21
LIG3-204ENST00000585740 TSPOAP1O95153 1857 aa16.37■□□□□ 0.21
LIG3-204ENST00000585740 ADGBQ8N7X0 1667 aa16.37■□□□□ 0.21
LIG3-204ENST00000585740 CDC42BPAQ5VT25 1732 aa16.36■□□□□ 0.21
LIG3-204ENST00000585740 CAMSAP2Q08AD1 1489 aa16.35■□□□□ 0.21
LIG3-204ENST00000585740 CFDP1Q9UEE9 299 aaPredicted RBP16.34■□□□□ 0.21
LIG3-204ENST00000585740 ABCC5O15440 1437 aa16.34■□□□□ 0.21
LIG3-204ENST00000585740 ABCC2Q92887 1545 aa16.34■□□□□ 0.21
LIG3-204ENST00000585740 CROCC2H7BZ55 1655 aa16.34■□□□□ 0.21
LIG3-204ENST00000585740 UHRF1BP1LA0JNW5 1464 aa16.3■□□□□ 0.2
LIG3-204ENST00000585740 ADGRL1O94910 1474 aa16.3■□□□□ 0.2
LIG3-204ENST00000585740 ADGRL2O95490 1459 aa16.29■□□□□ 0.2
LIG3-204ENST00000585740 RRP7BPQ9NSQ0 103 aa16.29■□□□□ 0.2
LIG3-204ENST00000585740 CHIC2Q9UKJ5 165 aa16.29■□□□□ 0.2
LIG3-204ENST00000585740 SHANK2Q9UPX8 1470 aa16.28■□□□□ 0.2
LIG3-204ENST00000585740 PREX2Q70Z35 1606 aa16.27■□□□□ 0.19
LIG3-204ENST00000585740 ARHGEF5Q12774 1597 aa16.26■□□□□ 0.19
LIG3-204ENST00000585740 ZNF644Q9H582 1327 aaPredicted RBP16.24■□□□□ 0.19
LIG3-204ENST00000585740 SIN3AQ96ST3 1273 aa16.24■□□□□ 0.19
LIG3-204ENST00000585740 HECW2Q9P2P5 1572 aa16.23■□□□□ 0.19
LIG3-204ENST00000585740 NEUROD1Q13562 356 aa16.23■□□□□ 0.19
LIG3-204ENST00000585740 ANKRD30AQ9BXX3 1397 aa16.23■□□□□ 0.19
LIG3-204ENST00000585740 CDC42BPBQ9Y5S2 1711 aa16.22■□□□□ 0.19
LIG3-204ENST00000585740 TRIM52Q96A61 297 aa16.22■□□□□ 0.19
LIG3-204ENST00000585740 ZCCHC11Q5TAX3 1644 aaKnown RBP16.22■□□□□ 0.19
LIG3-204ENST00000585740 TONSLQ96HA7 1378 aa16.22■□□□□ 0.19
LIG3-204ENST00000585740 MYO5CQ9NQX4 1742 aa16.22■□□□□ 0.19
LIG3-204ENST00000585740 NCOA1Q15788 1441 aa16.21■□□□□ 0.19
LIG3-204ENST00000585740 ASXL2Q76L83 1435 aa16.21■□□□□ 0.19
LIG3-204ENST00000585740 RSPH4AQ5TD94 716 aa16.21■□□□□ 0.19
LIG3-204ENST00000585740 KDM5BQ9UGL1 1544 aa16.2■□□□□ 0.18
LIG3-204ENST00000585740 ZNF777Q9ULD5 760 aaPredicted RBP16.2■□□□□ 0.18
LIG3-204ENST00000585740 PPRC1Q5VV67 1664 aaKnown RBP16.19■□□□□ 0.18
LIG3-204ENST00000585740 COL17A1Q9UMD9 1497 aaPredicted RBP16.19■□□□□ 0.18
LIG3-204ENST00000585740 GLI2P10070 1586 aa16.18■□□□□ 0.18
LIG3-204ENST00000585740 PLEKHH2Q8IVE3 1493 aa16.18■□□□□ 0.18
LIG3-204ENST00000585740 PPP1R15AO75807 674 aaPredicted RBP16.18■□□□□ 0.18
LIG3-204ENST00000585740 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.18■□□□□ 0.18
LIG3-204ENST00000585740 MPHOSPH9Q99550 1183 aa16.17■□□□□ 0.18
LIG3-204ENST00000585740 C9orf84Q5VXU9 1444 aa16.17■□□□□ 0.18
LIG3-204ENST00000585740 SAMD9LQ8IVG5 1584 aa16.17■□□□□ 0.18
LIG3-204ENST00000585740 TSPY4P0CV99 314 aa16.16■□□□□ 0.18
LIG3-204ENST00000585740 TSPY10P0CW01 314 aa16.16■□□□□ 0.18
LIG3-204ENST00000585740 TTC37Q6PGP7 1564 aa16.16■□□□□ 0.18
LIG3-204ENST00000585740 CCDC141Q6ZP82 1450 aa16.16■□□□□ 0.18
LIG3-204ENST00000585740 MAST1Q9Y2H9 1570 aa16.15■□□□□ 0.18
LIG3-204ENST00000585740 DENND4BO75064 1496 aaPredicted RBP16.14■□□□□ 0.17
LIG3-204ENST00000585740 MBD5Q9P267 1494 aa16.14■□□□□ 0.17
LIG3-204ENST00000585740 ARHGAP5Q13017 1502 aa16.14■□□□□ 0.17
LIG3-204ENST00000585740 KIAA1107Q9UPP5 1409 aa16.12■□□□□ 0.17
LIG3-204ENST00000585740 ANKRD50Q9ULJ7 1429 aa16.11■□□□□ 0.17
LIG3-204ENST00000585740 ARAP3Q8WWN8 1544 aa16.11■□□□□ 0.17
LIG3-204ENST00000585740 TEX14Q8IWB6 1497 aa16.1■□□□□ 0.17
LIG3-204ENST00000585740 KDM5DQ9BY66 1539 aa16.09■□□□□ 0.17
LIG3-204ENST00000585740 ANKRD30BQ9BXX2 1392 aa16.09■□□□□ 0.17
LIG3-204ENST00000585740 PLCH2O75038 1416 aa16.09■□□□□ 0.17
LIG3-204ENST00000585740 PZPP20742 1482 aa16.09■□□□□ 0.17
LIG3-204ENST00000585740 FBXO41Q8TF61 875 aa16.08■□□□□ 0.16
LIG3-204ENST00000585740 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.16
LIG3-204ENST00000585740 SYCP2Q9BX26 1530 aa16.08■□□□□ 0.16
LIG3-204ENST00000585740 KIF15Q9NS87 1388 aa16.07■□□□□ 0.16
LIG3-204ENST00000585740 PLXNC1O60486 1568 aa16.07■□□□□ 0.16
LIG3-204ENST00000585740 MAP3K4Q9Y6R4 1608 aa16.07■□□□□ 0.16
LIG3-204ENST00000585740 RPRD2Q5VT52 1461 aaKnown RBP16.06■□□□□ 0.16
LIG3-204ENST00000585740 HNRNPMP52272 730 aaKnown RBP eCLIP16.06■□□□□ 0.16
LIG3-204ENST00000585740 WDR7Q9Y4E6 1490 aa16.04■□□□□ 0.16
LIG3-204ENST00000585740 EFCAB2Q5VUJ9 269 aa16.04■□□□□ 0.16
LIG3-204ENST00000585740 CENPBP07199 599 aaPredicted RBP16.03■□□□□ 0.16
LIG3-204ENST00000585740 MIER1Q8N108 512 aa16.02■□□□□ 0.16
LIG3-204ENST00000585740 KCNH8Q96L42 1107 aa16.02■□□□□ 0.16
LIG3-204ENST00000585740 ABCC1P33527 1531 aa16.02■□□□□ 0.15
LIG3-204ENST00000585740 ABCA9Q8IUA7 1624 aa16.01■□□□□ 0.15
LIG3-204ENST00000585740 UNC13BO14795 1591 aa16■□□□□ 0.15
LIG3-204ENST00000585740 DUOX2Q9NRD8 1548 aa15.99■□□□□ 0.15
LIG3-204ENST00000585740 NUP155O75694 1391 aa15.99■□□□□ 0.15
LIG3-204ENST00000585740 FOXD1Q16676 465 aa15.96■□□□□ 0.15
LIG3-204ENST00000585740 ERBINQ96RT1 1412 aa15.95■□□□□ 0.14
LIG3-204ENST00000585740 ARHGEF12Q9NZN5 1544 aa15.95■□□□□ 0.14
LIG3-204ENST00000585740 PKD2Q13563 968 aa15.95■□□□□ 0.14
LIG3-204ENST00000585740 RTEL1-TNFRSF6BF6WH68 1400 aa15.94■□□□□ 0.14
LIG3-204ENST00000585740 L3MBTL2Q969R5 705 aa15.94■□□□□ 0.14
LIG3-204ENST00000585740 CD109Q6YHK3 1445 aa15.94■□□□□ 0.14
LIG3-204ENST00000585740 IQGAP3Q86VI3 1631 aa15.93■□□□□ 0.14
LIG3-204ENST00000585740 FAM135AQ9P2D6 1515 aa15.93■□□□□ 0.14
LIG3-204ENST00000585740 CFAP74Q9C0B2 1584 aa15.92■□□□□ 0.14
LIG3-204ENST00000585740 MAGI2Q86UL8 1455 aa15.91■□□□□ 0.14
LIG3-204ENST00000585740 FANCAO15360 1455 aa15.9■□□□□ 0.14
LIG3-204ENST00000585740 TRAPPC8Q9Y2L5 1435 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms