RNA–Protein interactions for RNA: ENST00000584887.1

TOP3A-219, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 545 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-219ENST00000584887 PTPRMP28827 1452 aa33.27■■■□□ 2.92
TOP3A-219ENST00000584887 EFCAB2Q5VUJ9 269 aa33.27■■■□□ 2.92
TOP3A-219ENST00000584887 POGZQ7Z3K3 1410 aa33.26■■■□□ 2.91
TOP3A-219ENST00000584887 YEATS2Q9ULM3 1422 aa33.25■■■□□ 2.91
TOP3A-219ENST00000584887 MADDQ8WXG6 1647 aa33.24■■■□□ 2.91
TOP3A-219ENST00000584887 CASKIN1Q8WXD9 1431 aa33.24■■■□□ 2.91
TOP3A-219ENST00000584887 ARHGAP5Q13017 1502 aa33.22■■■□□ 2.91
TOP3A-219ENST00000584887 CCDC18Q5T9S5 1454 aa33.2■■■□□ 2.91
TOP3A-219ENST00000584887 MAGI2Q86UL8 1455 aa33.19■■■□□ 2.9
TOP3A-219ENST00000584887 RIMS1Q86UR5 1692 aaKnown RBP33.14■■■□□ 2.9
TOP3A-219ENST00000584887 FYCO1Q9BQS8 1478 aa33.12■■■□□ 2.89
TOP3A-219ENST00000584887 MLECQ14165 292 aa33.12■■■□□ 2.89
TOP3A-219ENST00000584887 PLPPR3Q6T4P5 718 aa33.11■■■□□ 2.89
TOP3A-219ENST00000584887 SIGLEC1Q9BZZ2 1709 aa33.11■■■□□ 2.89
TOP3A-219ENST00000584887 MYT1LQ9UL68 1186 aa33.09■■■□□ 2.89
TOP3A-219ENST00000584887 ZNF518AQ6AHZ1 1483 aa33.07■■■□□ 2.88
TOP3A-219ENST00000584887 ATP10AO60312 1499 aa33.05■■■□□ 2.88
TOP3A-219ENST00000584887 AFAP1Q8N556 730 aa33.05■■■□□ 2.88
TOP3A-219ENST00000584887 CDC42BPBQ9Y5S2 1711 aa33.05■■■□□ 2.88
TOP3A-219ENST00000584887 C9orf84Q5VXU9 1444 aa33.03■■■□□ 2.88
TOP3A-219ENST00000584887 PREX2Q70Z35 1606 aa33.03■■■□□ 2.88
TOP3A-219ENST00000584887 KDM5CP41229 1560 aa32.99■■■□□ 2.87
TOP3A-219ENST00000584887 ILDR1Q86SU0 546 aaPredicted RBP32.98■■■□□ 2.87
TOP3A-219ENST00000584887 FER1L4A9Z1Z3 1794 aa32.96■■■□□ 2.87
TOP3A-219ENST00000584887 ABCC1P33527 1531 aa32.96■■■□□ 2.87
TOP3A-219ENST00000584887 CDC42BPAQ5VT25 1732 aa32.94■■■□□ 2.86
TOP3A-219ENST00000584887 ZNF777Q9ULD5 760 aaPredicted RBP32.93■■■□□ 2.86
TOP3A-219ENST00000584887 TRAPPC8Q9Y2L5 1435 aa32.93■■■□□ 2.86
TOP3A-219ENST00000584887 LMTK3Q96Q04 1460 aa32.93■■■□□ 2.86
TOP3A-219ENST00000584887 ARHGEF12Q9NZN5 1544 aa32.92■■■□□ 2.86
TOP3A-219ENST00000584887 DIP2CQ9Y2E4 1556 aa32.9■■■□□ 2.86
TOP3A-219ENST00000584887 ITSN2Q9NZM3 1697 aa32.9■■■□□ 2.86
TOP3A-219ENST00000584887 MLH3Q9UHC1 1453 aa32.86■■■□□ 2.85
TOP3A-219ENST00000584887 MTUS2Q5JR59 1369 aa32.86■■■□□ 2.85
TOP3A-219ENST00000584887 ABCA6Q8N139 1617 aa32.86■■■□□ 2.85
TOP3A-219ENST00000584887 CEP162Q5TB80 1403 aa32.85■■■□□ 2.85
TOP3A-219ENST00000584887 GPATCH8Q9UKJ3 1502 aaKnown RBP32.83■■■□□ 2.85
TOP3A-219ENST00000584887 HSPA2P54652 639 aa32.83■■■□□ 2.85
TOP3A-219ENST00000584887 SAMD9LQ8IVG5 1584 aa32.81■■■□□ 2.84
TOP3A-219ENST00000584887 CCNB3Q8WWL7 1395 aa32.81■■■□□ 2.84
TOP3A-219ENST00000584887 SYCP2Q9BX26 1530 aa32.79■■■□□ 2.84
TOP3A-219ENST00000584887 CFDP1Q9UEE9 299 aaPredicted RBP32.78■■■□□ 2.84
TOP3A-219ENST00000584887 REREQ9P2R6 1566 aa32.78■■■□□ 2.84
TOP3A-219ENST00000584887 CEBPAP49715 358 aaPredicted RBP32.77■■■□□ 2.84
TOP3A-219ENST00000584887 HNRNPMP52272 730 aaKnown RBP eCLIP32.75■■■□□ 2.83
TOP3A-219ENST00000584887 KIDINS220Q9ULH0 1771 aa32.75■■■□□ 2.83
TOP3A-219ENST00000584887 SPAG9O60271 1321 aaKnown RBP32.72■■■□□ 2.83
TOP3A-219ENST00000584887 ESF1Q9H501 851 aaKnown RBP32.7■■■□□ 2.83
TOP3A-219ENST00000584887 AGLP35573 1532 aa32.7■■■□□ 2.83
TOP3A-219ENST00000584887 EHBP1L1Q8N3D4 1523 aa32.7■■■□□ 2.83
TOP3A-219ENST00000584887 PLEKHH2Q8IVE3 1493 aa32.69■■■□□ 2.82
TOP3A-219ENST00000584887 KIAA1107Q9UPP5 1409 aa32.66■■■□□ 2.82
TOP3A-219ENST00000584887 TIAM1Q13009 1591 aa32.64■■■□□ 2.82
TOP3A-219ENST00000584887 PREX1Q8TCU6 1659 aa32.63■■■□□ 2.81
TOP3A-219ENST00000584887 ATP7AQ04656 1500 aa32.62■■■□□ 2.81
TOP3A-219ENST00000584887 LOC105371045A0A1W2PR82 267 aa32.62■■■□□ 2.81
TOP3A-219ENST00000584887 ZNF644Q9H582 1327 aaPredicted RBP32.6■■■□□ 2.81
TOP3A-219ENST00000584887 UHRF1BP1Q6BDS2 1440 aa32.57■■■□□ 2.8
TOP3A-219ENST00000584887 INO80Q9ULG1 1556 aaPredicted RBP32.57■■■□□ 2.8
TOP3A-219ENST00000584887 C3P01024 1663 aa32.56■■■□□ 2.8
TOP3A-219ENST00000584887 SUPT6HQ7KZ85 1726 aaKnown RBP32.56■■■□□ 2.8
TOP3A-219ENST00000584887 FBXO41Q8TF61 875 aa32.54■■■□□ 2.8
TOP3A-219ENST00000584887 CNTLNQ9NXG0 1405 aa32.53■■■□□ 2.8
TOP3A-219ENST00000584887 A2MP01023 1474 aa32.52■■■□□ 2.8
TOP3A-219ENST00000584887 SETD1BQ9UPS6 1966 aaKnown RBP32.52■■■□□ 2.8
TOP3A-219ENST00000584887 NCOA2Q15596 1464 aa32.51■■■□□ 2.79
TOP3A-219ENST00000584887 VPS8Q8N3P4 1428 aa32.48■■■□□ 2.79
TOP3A-219ENST00000584887 MBD5Q9P267 1494 aa32.47■■■□□ 2.79
TOP3A-219ENST00000584887 PLXNC1O60486 1568 aa32.46■■■□□ 2.79
TOP3A-219ENST00000584887 GGT6Q6P531 493 aa32.43■■■□□ 2.78
TOP3A-219ENST00000584887 CAMSAP2Q08AD1 1489 aa32.42■■■□□ 2.78
TOP3A-219ENST00000584887 ADGBQ8N7X0 1667 aa32.41■■■□□ 2.78
TOP3A-219ENST00000584887 MROH2AA6NES4 1674 aa32.4■■■□□ 2.78
TOP3A-219ENST00000584887 ZMYM3Q14202 1370 aa32.39■■■□□ 2.78
TOP3A-219ENST00000584887 CLTCQ00610 1675 aaKnown RBP32.38■■■□□ 2.77
TOP3A-219ENST00000584887 CCDC141Q6ZP82 1450 aa32.37■■■□□ 2.77
TOP3A-219ENST00000584887 RTEL1-TNFRSF6BF6WH68 1400 aa32.36■■■□□ 2.77
TOP3A-219ENST00000584887 STRCQ7RTU9 1775 aa32.36■■■□□ 2.77
TOP3A-219ENST00000584887 LRRC9Q6ZRR7 1453 aa32.35■■■□□ 2.77
TOP3A-219ENST00000584887 DMRT2Q9Y5R5 561 aa32.35■■■□□ 2.77
TOP3A-219ENST00000584887 NPATQ14207 1427 aa32.34■■■□□ 2.77
TOP3A-219ENST00000584887 CERKQ8TCT0 537 aa32.33■■■□□ 2.77
TOP3A-219ENST00000584887 DHX29Q7Z478 1369 aaKnown RBP32.3■■■□□ 2.76
TOP3A-219ENST00000584887 KANK4Q5T7N3 995 aaPredicted RBP32.28■■■□□ 2.76
TOP3A-219ENST00000584887 RSPH4AQ5TD94 716 aa32.28■■■□□ 2.76
TOP3A-219ENST00000584887 KIF3BO15066 747 aa32.26■■■□□ 2.75
TOP3A-219ENST00000584887 PPP6R1Q9UPN7 881 aa32.25■■■□□ 2.75
TOP3A-219ENST00000584887 PTPRKQ15262 1439 aa32.24■■■□□ 2.75
TOP3A-219ENST00000584887 ARHGEF5Q12774 1597 aa32.24■■■□□ 2.75
TOP3A-219ENST00000584887 TSPY4P0CV99 314 aa32.23■■■□□ 2.75
TOP3A-219ENST00000584887 TSPY10P0CW01 314 aa32.23■■■□□ 2.75
TOP3A-219ENST00000584887 NCOA1Q15788 1441 aa32.23■■■□□ 2.75
TOP3A-219ENST00000584887 MAP3K1Q13233 1512 aa32.22■■■□□ 2.75
TOP3A-219ENST00000584887 PTPRTO14522 1441 aa32.21■■■□□ 2.75
TOP3A-219ENST00000584887 CAMSAP1Q5T5Y3 1602 aa32.2■■■□□ 2.75
TOP3A-219ENST00000584887 MYO3AQ8NEV4 1616 aa32.19■■■□□ 2.74
TOP3A-219ENST00000584887 APLP2Q06481 763 aa32.16■■■□□ 2.74
TOP3A-219ENST00000584887 MYOM3Q5VTT5 1437 aa32.16■■■□□ 2.74
TOP3A-219ENST00000584887 CEP170BQ9Y4F5 1589 aaPredicted RBP32.14■■■□□ 2.74
TOP3A-219ENST00000584887 ZNF142P52746 1687 aaPredicted RBP32.12■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms