RNA–Protein interactions for RNA: ENST00000583294.1

SMARCE1-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 476 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-219ENST00000583294 ST18O60284 1047 aa13.57□□□□□ -0.24
SMARCE1-219ENST00000583294 TMEM121BQ9BXQ6 578 aaPredicted RBP13.54□□□□□ -0.24
SMARCE1-219ENST00000583294 KDM2AQ9Y2K7 1162 aa13.54□□□□□ -0.24
SMARCE1-219ENST00000583294 SNPHO15079 494 aa13.51□□□□□ -0.25
SMARCE1-219ENST00000583294 NLRP6P59044 892 aa13.49□□□□□ -0.25
SMARCE1-219ENST00000583294 MICALL2Q8IY33 904 aa13.49□□□□□ -0.25
SMARCE1-219ENST00000583294 FBXO22Q8NEZ5 403 aa13.49□□□□□ -0.25
SMARCE1-219ENST00000583294 MFRPQ9BY79 579 aa13.48□□□□□ -0.25
SMARCE1-219ENST00000583294 RYDENQ9NUL5 291 aaKnown RBP13.48□□□□□ -0.25
SMARCE1-219ENST00000583294 TMEM92Q6UXU6 159 aa13.43□□□□□ -0.26
SMARCE1-219ENST00000583294 PLSCR2Q9NRY7 297 aa13.41□□□□□ -0.26
SMARCE1-219ENST00000583294 MARVELD3Q96A59 401 aa13.4□□□□□ -0.26
SMARCE1-219ENST00000583294 PCDH10Q9P2E7 1040 aa13.4□□□□□ -0.26
SMARCE1-219ENST00000583294 HOXB3P14651 431 aaPredicted RBP13.37□□□□□ -0.27
SMARCE1-219ENST00000583294 CDAN1Q8IWY9 1227 aa13.35□□□□□ -0.27
SMARCE1-219ENST00000583294 PPP1R37O75864 691 aa13.32□□□□□ -0.28
SMARCE1-219ENST00000583294 EMP3P54852 163 aa13.28□□□□□ -0.28
SMARCE1-219ENST00000583294 DOK7Q18PE1 504 aa13.27□□□□□ -0.29
SMARCE1-219ENST00000583294 CADPS2Q86UW7 1296 aa13.27□□□□□ -0.29
SMARCE1-219ENST00000583294 ZNF710Q8N1W2 664 aa13.27□□□□□ -0.29
SMARCE1-219ENST00000583294 BCANQ96GW7 911 aa13.25□□□□□ -0.29
SMARCE1-219ENST00000583294 POTEB3A0JP26 581 aa13.23□□□□□ -0.29
SMARCE1-219ENST00000583294 FAM205CA6NFA0 338 aa13.23□□□□□ -0.29
SMARCE1-219ENST00000583294 POTEBQ6S5H4 581 aa13.23□□□□□ -0.29
SMARCE1-219ENST00000583294 HOXB1P14653 301 aaPredicted RBP13.22□□□□□ -0.29
SMARCE1-219ENST00000583294 C2orf72A6NCS6 295 aa13.2□□□□□ -0.3
SMARCE1-219ENST00000583294 HS3ST6Q96QI5 342 aa13.2□□□□□ -0.3
SMARCE1-219ENST00000583294 KIF3CO14782 793 aa13.19□□□□□ -0.3
SMARCE1-219ENST00000583294 RIMBP2O15034 1052 aa13.19□□□□□ -0.3
SMARCE1-219ENST00000583294 GPR153Q6NV75 609 aa13.15□□□□□ -0.3
SMARCE1-219ENST00000583294 WDR70Q9NW82 654 aa13.14□□□□□ -0.31
SMARCE1-219ENST00000583294 ZSWIM6Q9HCJ5 1215 aa13.13□□□□□ -0.31
SMARCE1-219ENST00000583294 ARSIQ5FYB1 569 aa13.12□□□□□ -0.31
SMARCE1-219ENST00000583294 TMC2Q8TDI7 906 aa13.12□□□□□ -0.31
SMARCE1-219ENST00000583294 ERBB3P21860 1342 aa13.11□□□□□ -0.31
SMARCE1-219ENST00000583294 KHSRPQ92945 711 aaKnown RBP eCLIP13.1□□□□□ -0.31
SMARCE1-219ENST00000583294 NBR1Q14596 966 aa13.07□□□□□ -0.32
SMARCE1-219ENST00000583294 KRTAP3-3Q9BYR6 98 aa13.06□□□□□ -0.32
SMARCE1-219ENST00000583294 KRTAP3-2Q9BYR7 98 aa13.06□□□□□ -0.32
SMARCE1-219ENST00000583294 VARS2Q5ST30 1063 aaKnown RBP13.05□□□□□ -0.32
SMARCE1-219ENST00000583294 SPNS2Q8IVW8 549 aa13.03□□□□□ -0.32
SMARCE1-219ENST00000583294 NCKAP5LQ9HCH0 1330 aa13.03□□□□□ -0.32
SMARCE1-219ENST00000583294 LARP6Q9BRS8 491 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-219ENST00000583294 PDE4AP27815 886 aa13.01□□□□□ -0.33
SMARCE1-219ENST00000583294 GPHNQ9NQX3 736 aaPredicted RBP13□□□□□ -0.33
SMARCE1-219ENST00000583294 SLC34A2O95436 690 aa12.99□□□□□ -0.33
SMARCE1-219ENST00000583294 P3H3Q8IVL6 736 aa12.99□□□□□ -0.33
SMARCE1-219ENST00000583294 KCNV2Q8TDN2 545 aa12.99□□□□□ -0.33
SMARCE1-219ENST00000583294 PCDHGA4Q9Y5G9 962 aa12.99□□□□□ -0.33
SMARCE1-219ENST00000583294 NUDT7P0C024 238 aa12.98□□□□□ -0.33
SMARCE1-219ENST00000583294 FOXK1P85037 733 aa12.97□□□□□ -0.33
SMARCE1-219ENST00000583294 PLPP6Q8IY26 295 aa12.97□□□□□ -0.33
SMARCE1-219ENST00000583294 CRISPLD2Q9H0B8 497 aa12.97□□□□□ -0.33
SMARCE1-219ENST00000583294 ZNF316A6NFI3 1004 aaPredicted RBP12.96□□□□□ -0.33
SMARCE1-219ENST00000583294 DSG2Q14126 1118 aa12.96□□□□□ -0.33
SMARCE1-219ENST00000583294 MMRN1Q13201 1228 aa12.94□□□□□ -0.34
SMARCE1-219ENST00000583294 E2F4Q16254 413 aa12.94□□□□□ -0.34
SMARCE1-219ENST00000583294 ZNF687Q8N1G0 1237 aa12.94□□□□□ -0.34
SMARCE1-219ENST00000583294 DDX27Q96GQ7 796 aaKnown RBP12.93□□□□□ -0.34
SMARCE1-219ENST00000583294 PRKCSHP14314 528 aaPredicted RBP12.91□□□□□ -0.34
SMARCE1-219ENST00000583294 MFSD10Q14728 455 aa12.91□□□□□ -0.34
SMARCE1-219ENST00000583294 LHX6Q9UPM6 363 aa12.91□□□□□ -0.34
SMARCE1-219ENST00000583294 PTCD2Q8WV60 388 aaKnown RBP12.89□□□□□ -0.35
SMARCE1-219ENST00000583294 TPRNQ4KMQ1 711 aa12.86□□□□□ -0.35
SMARCE1-219ENST00000583294 PPP1R15BQ5SWA1 713 aa12.85□□□□□ -0.35
SMARCE1-219ENST00000583294 KDM4FA0A1W2PPD8 638 aa12.84□□□□□ -0.35
SMARCE1-219ENST00000583294 ARHGEF1Q92888 912 aaKnown RBP12.84□□□□□ -0.35
SMARCE1-219ENST00000583294 UPF1Q92900 1129 aaKnown RBP eCLIP12.8□□□□□ -0.36
SMARCE1-219ENST00000583294 TBC1D12O60347 775 aa12.79□□□□□ -0.36
SMARCE1-219ENST00000583294 CAMK2BQ13554 666 aa12.78□□□□□ -0.36
SMARCE1-219ENST00000583294 POTEEQ6S8J3 1075 aa12.78□□□□□ -0.36
SMARCE1-219ENST00000583294 OXER1Q8TDS5 423 aa12.78□□□□□ -0.36
SMARCE1-219ENST00000583294 ANKRD13DQ6ZTN6 518 aa12.77□□□□□ -0.37
SMARCE1-219ENST00000583294 AXIN2Q9Y2T1 843 aa12.77□□□□□ -0.37
SMARCE1-219ENST00000583294 SEMA3EO15041 775 aa12.74□□□□□ -0.37
SMARCE1-219ENST00000583294 LSM11P83369 360 aaKnown RBP eCLIP12.73□□□□□ -0.37
SMARCE1-219ENST00000583294 EMILIN3Q9NT22 766 aa12.72□□□□□ -0.37
SMARCE1-219ENST00000583294 PSDA5PKW4 1024 aaPredicted RBP12.71□□□□□ -0.37
SMARCE1-219ENST00000583294 PBX2P40425 430 aa12.7□□□□□ -0.38
SMARCE1-219ENST00000583294 ARIH1Q9Y4X5 557 aaPredicted RBP12.7□□□□□ -0.38
SMARCE1-219ENST00000583294 DPYSL4O14531 572 aa12.69□□□□□ -0.38
SMARCE1-219ENST00000583294 MYT1LQ9UL68 1186 aa12.67□□□□□ -0.38
SMARCE1-219ENST00000583294 TESPA1A2RU30 521 aaPredicted RBP12.66□□□□□ -0.38
SMARCE1-219ENST00000583294 ARHGAP33O14559 1287 aa12.66□□□□□ -0.38
SMARCE1-219ENST00000583294 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.66□□□□□ -0.38
SMARCE1-219ENST00000583294 TULP1O00294 542 aaPredicted RBP12.65□□□□□ -0.38
SMARCE1-219ENST00000583294 PPP4R3BQ5MIZ7 849 aa12.65□□□□□ -0.38
SMARCE1-219ENST00000583294 LMOD2Q6P5Q4 547 aa12.65□□□□□ -0.38
SMARCE1-219ENST00000583294 RNF166Q96A37 237 aaPredicted RBP12.65□□□□□ -0.38
SMARCE1-219ENST00000583294 PSEN2P49810 448 aa12.64□□□□□ -0.39
SMARCE1-219ENST00000583294 EVI5O60447 810 aa12.62□□□□□ -0.39
SMARCE1-219ENST00000583294 MAP3K9P80192 1104 aa12.62□□□□□ -0.39
SMARCE1-219ENST00000583294 DMRTA1Q5VZB9 504 aa12.62□□□□□ -0.39
SMARCE1-219ENST00000583294 ANO8Q9HCE9 1232 aaPredicted RBP12.62□□□□□ -0.39
SMARCE1-219ENST00000583294 ZNF454Q8N9F8 522 aa12.61□□□□□ -0.39
SMARCE1-219ENST00000583294 PTGER2P43116 358 aa12.59□□□□□ -0.39
SMARCE1-219ENST00000583294 MLLT3P42568 568 aaPredicted RBP12.58□□□□□ -0.4
SMARCE1-219ENST00000583294 SPDYE16A6NNV3 312 aaPredicted RBP12.57□□□□□ -0.4
SMARCE1-219ENST00000583294 FOSBP53539 338 aa12.57□□□□□ -0.4
SMARCE1-219ENST00000583294 SMYD5Q6GMV2 418 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms