RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 LRRC9Q6ZRR7 1453 aa13.89□□□□□ -0.19
SS18-220ENST00000582092 MTUS2Q5JR59 1369 aa13.89□□□□□ -0.19
SS18-220ENST00000582092 PLCH2O75038 1416 aa13.89□□□□□ -0.19
SS18-220ENST00000582092 AKNAQ7Z591 1439 aa13.89□□□□□ -0.19
SS18-220ENST00000582092 EFCAB2Q5VUJ9 269 aa13.88□□□□□ -0.19
SS18-220ENST00000582092 DENND4BO75064 1496 aaPredicted RBP13.87□□□□□ -0.19
SS18-220ENST00000582092 RAPGEF3O95398 923 aa13.86□□□□□ -0.19
SS18-220ENST00000582092 CCNB3Q8WWL7 1395 aa13.84□□□□□ -0.19
SS18-220ENST00000582092 RICTORQ6R327 1708 aa13.84□□□□□ -0.19
SS18-220ENST00000582092 FAM50AQ14320 339 aaKnown RBP13.84□□□□□ -0.19
SS18-220ENST00000582092 ADGRL1O94910 1474 aa13.84□□□□□ -0.19
SS18-220ENST00000582092 ARHGAP5Q13017 1502 aa13.84□□□□□ -0.19
SS18-220ENST00000582092 KDM4FA0A1W2PPD8 638 aa13.83□□□□□ -0.2
SS18-220ENST00000582092 ITGAEP38570 1179 aa13.83□□□□□ -0.2
SS18-220ENST00000582092 SCAPERQ9BY12 1400 aa13.81□□□□□ -0.2
SS18-220ENST00000582092 CDC42BPBQ9Y5S2 1711 aa13.81□□□□□ -0.2
SS18-220ENST00000582092 RRBP1Q9P2E9 1410 aaKnown RBP13.81□□□□□ -0.2
SS18-220ENST00000582092 PREX2Q70Z35 1606 aa13.8□□□□□ -0.2
SS18-220ENST00000582092 MAGI2Q86UL8 1455 aa13.8□□□□□ -0.2
SS18-220ENST00000582092 FRMPD1Q5SYB0 1578 aa13.79□□□□□ -0.2
SS18-220ENST00000582092 ARID4BQ4LE39 1312 aaPredicted RBP13.79□□□□□ -0.2
SS18-220ENST00000582092 ZMYM4Q5VZL5 1548 aa13.79□□□□□ -0.2
SS18-220ENST00000582092 CDC42BPAQ5VT25 1732 aa13.78□□□□□ -0.2
SS18-220ENST00000582092 MYT1LQ9UL68 1186 aa13.78□□□□□ -0.2
SS18-220ENST00000582092 ZNF518AQ6AHZ1 1483 aa13.77□□□□□ -0.21
SS18-220ENST00000582092 POGZQ7Z3K3 1410 aa13.77□□□□□ -0.21
SS18-220ENST00000582092 ARHGEF40Q8TER5 1519 aa13.77□□□□□ -0.21
SS18-220ENST00000582092 ZFYVE16Q7Z3T8 1539 aa13.76□□□□□ -0.21
SS18-220ENST00000582092 EHBP1L1Q8N3D4 1523 aa13.75□□□□□ -0.21
SS18-220ENST00000582092 ITSN2Q9NZM3 1697 aa13.74□□□□□ -0.21
SS18-220ENST00000582092 SUPT6HQ7KZ85 1726 aaKnown RBP13.73□□□□□ -0.21
SS18-220ENST00000582092 ZNF777Q9ULD5 760 aaPredicted RBP13.73□□□□□ -0.21
SS18-220ENST00000582092 CFDP1Q9UEE9 299 aaPredicted RBP13.72□□□□□ -0.21
SS18-220ENST00000582092 BCORL1Q5H9F3 1711 aa13.72□□□□□ -0.21
SS18-220ENST00000582092 ABCC1P33527 1531 aa13.71□□□□□ -0.21
SS18-220ENST00000582092 NCOA2Q15596 1464 aa13.71□□□□□ -0.21
SS18-220ENST00000582092 PLEKHH2Q8IVE3 1493 aa13.71□□□□□ -0.21
SS18-220ENST00000582092 HECW2Q9P2P5 1572 aa13.71□□□□□ -0.22
SS18-220ENST00000582092 GPATCH8Q9UKJ3 1502 aaKnown RBP13.7□□□□□ -0.22
SS18-220ENST00000582092 ATP10AO60312 1499 aa13.7□□□□□ -0.22
SS18-220ENST00000582092 KDM5CP41229 1560 aa13.7□□□□□ -0.22
SS18-220ENST00000582092 ADAMTSL3P82987 1691 aa13.69□□□□□ -0.22
SS18-220ENST00000582092 AFAP1Q8N556 730 aa13.69□□□□□ -0.22
SS18-220ENST00000582092 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.69□□□□□ -0.22
SS18-220ENST00000582092 MYOM3Q5VTT5 1437 aa13.68□□□□□ -0.22
SS18-220ENST00000582092 C9orf84Q5VXU9 1444 aa13.68□□□□□ -0.22
SS18-220ENST00000582092 FGD6Q6ZV73 1430 aa13.68□□□□□ -0.22
SS18-220ENST00000582092 YEATS2Q9ULM3 1422 aa13.68□□□□□ -0.22
SS18-220ENST00000582092 MLH3Q9UHC1 1453 aa13.67□□□□□ -0.22
SS18-220ENST00000582092 SAMD9LQ8IVG5 1584 aa13.66□□□□□ -0.22
SS18-220ENST00000582092 KIAA1107Q9UPP5 1409 aa13.66□□□□□ -0.22
SS18-220ENST00000582092 TRAPPC8Q9Y2L5 1435 aa13.64□□□□□ -0.23
SS18-220ENST00000582092 SYCP2Q9BX26 1530 aa13.64□□□□□ -0.23
SS18-220ENST00000582092 MADDQ8WXG6 1647 aa13.64□□□□□ -0.23
SS18-220ENST00000582092 FER1L4A9Z1Z3 1794 aa13.64□□□□□ -0.23
SS18-220ENST00000582092 SETD5Q9C0A6 1442 aa13.64□□□□□ -0.23
SS18-220ENST00000582092 SPAG9O60271 1321 aaKnown RBP13.64□□□□□ -0.23
SS18-220ENST00000582092 RIMS1Q86UR5 1692 aaKnown RBP13.63□□□□□ -0.23
SS18-220ENST00000582092 PTPRMP28827 1452 aa13.63□□□□□ -0.23
SS18-220ENST00000582092 HNRNPMP52272 730 aaKnown RBP eCLIP13.63□□□□□ -0.23
SS18-220ENST00000582092 MLECQ14165 292 aa13.63□□□□□ -0.23
SS18-220ENST00000582092 ARHGEF12Q9NZN5 1544 aa13.63□□□□□ -0.23
SS18-220ENST00000582092 REREQ9P2R6 1566 aa13.62□□□□□ -0.23
SS18-220ENST00000582092 RSPH4AQ5TD94 716 aa13.62□□□□□ -0.23
SS18-220ENST00000582092 ESF1Q9H501 851 aaKnown RBP13.62□□□□□ -0.23
SS18-220ENST00000582092 KIDINS220Q9ULH0 1771 aa13.62□□□□□ -0.23
SS18-220ENST00000582092 DIP2CQ9Y2E4 1556 aa13.62□□□□□ -0.23
SS18-220ENST00000582092 CLSPNQ9HAW4 1339 aa13.62□□□□□ -0.23
SS18-220ENST00000582092 ABCA6Q8N139 1617 aa13.61□□□□□ -0.23
SS18-220ENST00000582092 MIA2Q96PC5 1412 aa13.61□□□□□ -0.23
SS18-220ENST00000582092 ATP7AQ04656 1500 aa13.59□□□□□ -0.23
SS18-220ENST00000582092 PTPN23Q9H3S7 1636 aa13.58□□□□□ -0.24
SS18-220ENST00000582092 SIGLEC1Q9BZZ2 1709 aa13.58□□□□□ -0.24
SS18-220ENST00000582092 AGLP35573 1532 aa13.58□□□□□ -0.24
SS18-220ENST00000582092 RAB3GAP2Q9H2M9 1393 aa13.58□□□□□ -0.24
SS18-220ENST00000582092 ADGBQ8N7X0 1667 aa13.57□□□□□ -0.24
SS18-220ENST00000582092 SETD1BQ9UPS6 1966 aaKnown RBP13.57□□□□□ -0.24
SS18-220ENST00000582092 TSPY4P0CV99 314 aa13.56□□□□□ -0.24
SS18-220ENST00000582092 TSPY10P0CW01 314 aa13.56□□□□□ -0.24
SS18-220ENST00000582092 CAMSAP2Q08AD1 1489 aa13.55□□□□□ -0.24
SS18-220ENST00000582092 INO80Q9ULG1 1556 aaPredicted RBP13.55□□□□□ -0.24
SS18-220ENST00000582092 PLPPR3Q6T4P5 718 aa13.55□□□□□ -0.24
SS18-220ENST00000582092 ZNF644Q9H582 1327 aaPredicted RBP13.55□□□□□ -0.24
SS18-220ENST00000582092 ACIN1Q9UKV3 1341 aaKnown RBP13.55□□□□□ -0.24
SS18-220ENST00000582092 RTEL1-TNFRSF6BF6WH68 1400 aa13.55□□□□□ -0.24
SS18-220ENST00000582092 CCDC141Q6ZP82 1450 aa13.55□□□□□ -0.24
SS18-220ENST00000582092 CHIC2Q9UKJ5 165 aa13.54□□□□□ -0.24
SS18-220ENST00000582092 DHX57Q6P158 1386 aaKnown RBP13.54□□□□□ -0.24
SS18-220ENST00000582092 A2MP01023 1474 aa13.53□□□□□ -0.24
SS18-220ENST00000582092 TCOF1Q13428 1488 aaKnown RBP13.53□□□□□ -0.24
SS18-220ENST00000582092 MBD5Q9P267 1494 aa13.53□□□□□ -0.24
SS18-220ENST00000582092 CNTLNQ9NXG0 1405 aa13.52□□□□□ -0.25
SS18-220ENST00000582092 ARHGEF5Q12774 1597 aa13.52□□□□□ -0.25
SS18-220ENST00000582092 RRP7BPQ9NSQ0 103 aa13.51□□□□□ -0.25
SS18-220ENST00000582092 PPP6R1Q9UPN7 881 aa13.5□□□□□ -0.25
SS18-220ENST00000582092 TRIM52Q96A61 297 aa13.49□□□□□ -0.25
SS18-220ENST00000582092 PREX1Q8TCU6 1659 aa13.48□□□□□ -0.25
SS18-220ENST00000582092 PLXNC1O60486 1568 aa13.48□□□□□ -0.25
SS18-220ENST00000582092 HFM1A2PYH4 1435 aa13.47□□□□□ -0.25
SS18-220ENST00000582092 MROH2AA6NES4 1674 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms