RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 VARS2Q5ST30 1063 aaKnown RBP15.51■□□□□ 0.07
SMCHD1-207ENST00000581711 BCL11BQ9C0K0 894 aaPredicted RBP15.49■□□□□ 0.07
SMCHD1-207ENST00000581711 NLRP6P59044 892 aa15.48■□□□□ 0.07
SMCHD1-207ENST00000581711 GPR153Q6NV75 609 aa15.47■□□□□ 0.07
SMCHD1-207ENST00000581711 TAOK2Q9UL54 1235 aa15.46■□□□□ 0.07
SMCHD1-207ENST00000581711 FBXO22Q8NEZ5 403 aa15.45■□□□□ 0.06
SMCHD1-207ENST00000581711 STK24Q9Y6E0 443 aa15.43■□□□□ 0.06
SMCHD1-207ENST00000581711 ZNF687Q8N1G0 1237 aa15.39■□□□□ 0.05
SMCHD1-207ENST00000581711 MFRPQ9BY79 579 aa15.39■□□□□ 0.05
SMCHD1-207ENST00000581711 ARSIQ5FYB1 569 aa15.37■□□□□ 0.05
SMCHD1-207ENST00000581711 STK25O00506 426 aa15.36■□□□□ 0.05
SMCHD1-207ENST00000581711 ECM2O94769 699 aaPredicted RBP15.33■□□□□ 0.04
SMCHD1-207ENST00000581711 RNF166Q96A37 237 aaPredicted RBP15.32■□□□□ 0.04
SMCHD1-207ENST00000581711 KHSRPQ92945 711 aaKnown RBP eCLIP15.31■□□□□ 0.041e-8■■□□□ 12.7
SMCHD1-207ENST00000581711 KIF3CO14782 793 aa15.28■□□□□ 0.04
SMCHD1-207ENST00000581711 MYT1LQ9UL68 1186 aa15.28■□□□□ 0.04
SMCHD1-207ENST00000581711 C2orf72A6NCS6 295 aa15.26■□□□□ 0.03
SMCHD1-207ENST00000581711 ZNF316A6NFI3 1004 aaPredicted RBP15.26■□□□□ 0.03
SMCHD1-207ENST00000581711 RGL2O15211 777 aa15.24■□□□□ 0.03
SMCHD1-207ENST00000581711 PKD2Q13563 968 aa15.24■□□□□ 0.03
SMCHD1-207ENST00000581711 PTGER2P43116 358 aa15.19■□□□□ 0.02
SMCHD1-207ENST00000581711 ANKRD13DQ6ZTN6 518 aa15.18■□□□□ 0.02
SMCHD1-207ENST00000581711 NUDT7P0C024 238 aa15.16■□□□□ 0.02
SMCHD1-207ENST00000581711 LSM11P83369 360 aaKnown RBP eCLIP15.14■□□□□ 0.01
SMCHD1-207ENST00000581711 TMC2Q8TDI7 906 aa15.14■□□□□ 0.01
SMCHD1-207ENST00000581711 SLC34A2O95436 690 aa15.13■□□□□ 0.01
SMCHD1-207ENST00000581711 PCDHGA4Q9Y5G9 962 aa15.13■□□□□ 0.01
SMCHD1-207ENST00000581711 LHX6Q9UPM6 363 aa15.1■□□□□ 0.01
SMCHD1-207ENST00000581711 PPP1R37O75864 691 aa15.09■□□□□ 0.01
SMCHD1-207ENST00000581711 PBX2P40425 430 aa15.08■□□□□ 0
SMCHD1-207ENST00000581711 POTEEQ6S8J3 1075 aa15.04■□□□□ -0
SMCHD1-207ENST00000581711 AXIN2Q9Y2T1 843 aa15.02■□□□□ -0
SMCHD1-207ENST00000581711 KDM4FA0A1W2PPD8 638 aa14.93□□□□□ -0.02
SMCHD1-207ENST00000581711 PTCD2Q8WV60 388 aaKnown RBP14.93□□□□□ -0.02
SMCHD1-207ENST00000581711 PSDA5PKW4 1024 aaPredicted RBP14.92□□□□□ -0.02
SMCHD1-207ENST00000581711 FOXK1P85037 733 aa14.92□□□□□ -0.02
SMCHD1-207ENST00000581711 HS6ST3Q8IZP7 471 aa14.92□□□□□ -0.02
SMCHD1-207ENST00000581711 ARHGAP33O14559 1287 aa14.9□□□□□ -0.02
SMCHD1-207ENST00000581711 PLPP6Q8IY26 295 aa14.89□□□□□ -0.03
SMCHD1-207ENST00000581711 GPHNQ9NQX3 736 aaPredicted RBP14.89□□□□□ -0.03
SMCHD1-207ENST00000581711 ADGRD1Q6QNK2 874 aa14.88□□□□□ -0.03
SMCHD1-207ENST00000581711 DSG2Q14126 1118 aa14.85□□□□□ -0.03
SMCHD1-207ENST00000581711 CHGAP10645 457 aaKnown RBP14.8□□□□□ -0.04
SMCHD1-207ENST00000581711 PSEN2P49810 448 aa14.8□□□□□ -0.04
SMCHD1-207ENST00000581711 DMRTA1Q5VZB9 504 aa14.8□□□□□ -0.04
SMCHD1-207ENST00000581711 HCSTQ9UBK5 93 aa14.8□□□□□ -0.04
SMCHD1-207ENST00000581711 TK2O00142 265 aa14.79□□□□□ -0.04
SMCHD1-207ENST00000581711 PPP4R3BQ5MIZ7 849 aa14.79□□□□□ -0.04
SMCHD1-207ENST00000581711 TBC1D12O60347 775 aa14.78□□□□□ -0.04
SMCHD1-207ENST00000581711 HRO43593 1189 aa14.76□□□□□ -0.05
SMCHD1-207ENST00000581711 PLA2G2EQ9NZK7 142 aa14.75□□□□□ -0.05
SMCHD1-207ENST00000581711 NKX1-1Q15270 411 aaPredicted RBP14.74□□□□□ -0.05
SMCHD1-207ENST00000581711 DNAJC5Q9H3Z4 198 aa14.72□□□□□ -0.05
SMCHD1-207ENST00000581711 OXER1Q8TDS5 423 aa14.69□□□□□ -0.06
SMCHD1-207ENST00000581711 KCNK17Q96T54 332 aa14.69□□□□□ -0.06
SMCHD1-207ENST00000581711 UPF1Q92900 1129 aaKnown RBP eCLIP14.67□□□□□ -0.06
SMCHD1-207ENST00000581711 KCNH8Q96L42 1107 aa14.67□□□□□ -0.06
SMCHD1-207ENST00000581711 RYDENQ9NUL5 291 aaKnown RBP14.67□□□□□ -0.06
SMCHD1-207ENST00000581711 CRISPLD2Q9H0B8 497 aa14.66□□□□□ -0.06
SMCHD1-207ENST00000581711 KCTD12Q96CX2 325 aaKnown RBP14.64□□□□□ -0.07
SMCHD1-207ENST00000581711 STAC3Q96MF2 364 aa14.63□□□□□ -0.07
SMCHD1-207ENST00000581711 PPP1R15BQ5SWA1 713 aa14.62□□□□□ -0.07
SMCHD1-207ENST00000581711 ZNF454Q8N9F8 522 aa14.62□□□□□ -0.07
SMCHD1-207ENST00000581711 VPS9D1Q9Y2B5 631 aa14.6□□□□□ -0.07
SMCHD1-207ENST00000581711 BCL2L12Q9HB09 334 aa14.58□□□□□ -0.08
SMCHD1-207ENST00000581711 NCKAP5LQ9HCH0 1330 aa14.58□□□□□ -0.08
SMCHD1-207ENST00000581711 FOSBP53539 338 aa14.54□□□□□ -0.08
SMCHD1-207ENST00000581711 PDE4AP27815 886 aa14.53□□□□□ -0.08
SMCHD1-207ENST00000581711 SLC4A5Q9BY07 1137 aa14.53□□□□□ -0.08
SMCHD1-207ENST00000581711 PTPREP23469 700 aa14.49□□□□□ -0.09
SMCHD1-207ENST00000581711 JPH4Q96JJ6 628 aa14.49□□□□□ -0.09
SMCHD1-207ENST00000581711 ANO8Q9HCE9 1232 aaPredicted RBP14.49□□□□□ -0.09
SMCHD1-207ENST00000581711 PTPN5P54829 565 aa14.48□□□□□ -0.09
SMCHD1-207ENST00000581711 GTPBP6O43824 516 aaPredicted RBP14.47□□□□□ -0.09
SMCHD1-207ENST00000581711 EVI5O60447 810 aa14.47□□□□□ -0.09
SMCHD1-207ENST00000581711 BHMG1C9JSJ3 638 aaPredicted RBP14.46□□□□□ -0.09
SMCHD1-207ENST00000581711 LARP6Q9BRS8 491 aaKnown RBP14.46□□□□□ -0.09
SMCHD1-207ENST00000581711 ZBED2Q9BTP6 218 aa14.46□□□□□ -0.09
SMCHD1-207ENST00000581711 DDX27Q96GQ7 796 aaKnown RBP14.44□□□□□ -0.1
SMCHD1-207ENST00000581711 ZDHHC16Q969W1 377 aa14.43□□□□□ -0.1
SMCHD1-207ENST00000581711 ADAM33Q9BZ11 813 aa14.43□□□□□ -0.1
SMCHD1-207ENST00000581711 THSD4Q6ZMP0 1018 aa14.42□□□□□ -0.1
SMCHD1-207ENST00000581711 MFSD10Q14728 455 aa14.4□□□□□ -0.1
SMCHD1-207ENST00000581711 MRPL50Q8N5N7 158 aaKnown RBP14.39□□□□□ -0.11
SMCHD1-207ENST00000581711 GOLGA8CPA6NN73 597 aa14.38□□□□□ -0.11
SMCHD1-207ENST00000581711 MAP3K9P80192 1104 aa14.38□□□□□ -0.11
SMCHD1-207ENST00000581711 WNT2BQ93097 391 aa14.37□□□□□ -0.11
SMCHD1-207ENST00000581711 NBPF3Q9H094 633 aa14.35□□□□□ -0.11
SMCHD1-207ENST00000581711 EMILIN3Q9NT22 766 aa14.35□□□□□ -0.11
SMCHD1-207ENST00000581711 IFFO2Q5TF58 517 aa14.33□□□□□ -0.12
SMCHD1-207ENST00000581711 PCDHGA10Q9Y5H3 936 aa14.31□□□□□ -0.12
SMCHD1-207ENST00000581711 PPP1R3GB7ZBB8 358 aa14.3□□□□□ -0.12
SMCHD1-207ENST00000581711 DCAF8L2P0C7V8 631 aa14.27□□□□□ -0.13
SMCHD1-207ENST00000581711 PROX2Q3B8N5 592 aa14.26□□□□□ -0.13
SMCHD1-207ENST00000581711 CADPS2Q86UW7 1296 aa14.26□□□□□ -0.13
SMCHD1-207ENST00000581711 RABGEF1Q9UJ41 708 aa14.26□□□□□ -0.13
SMCHD1-207ENST00000581711 RGS20O76081 388 aa14.25□□□□□ -0.13
SMCHD1-207ENST00000581711 COL9A1P20849 921 aa14.25□□□□□ -0.13
SMCHD1-207ENST00000581711 A0A0G2JS52 829 aa14.24□□□□□ -0.13
SMCHD1-207ENST00000581711 PHF14O94880 888 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms