RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 LCE2DQ5TA82 110 aaPredicted RBP11.48□□□□□ -0.57
SMCHD1-204ENST00000581226 VSIG10Q8N0Z9 540 aa11.48□□□□□ -0.57
SMCHD1-204ENST00000581226 L3MBTL3Q96JM7 780 aaPredicted RBP11.47□□□□□ -0.57
SMCHD1-204ENST00000581226 BOLA1Q9Y3E2 137 aa11.47□□□□□ -0.57
SMCHD1-204ENST00000581226 CADPS2Q86UW7 1296 aa11.44□□□□□ -0.58
SMCHD1-204ENST00000581226 MICALL2Q8IY33 904 aa11.44□□□□□ -0.58
SMCHD1-204ENST00000581226 KDM2AQ9Y2K7 1162 aa11.42□□□□□ -0.58
SMCHD1-204ENST00000581226 TMEM121BQ9BXQ6 578 aaPredicted RBP11.41□□□□□ -0.58
SMCHD1-204ENST00000581226 PDE4AP27815 886 aa11.35□□□□□ -0.59
SMCHD1-204ENST00000581226 NCKAP5LQ9HCH0 1330 aa11.34□□□□□ -0.59
SMCHD1-204ENST00000581226 C3orf67Q6ZVT6 689 aa11.33□□□□□ -0.6
SMCHD1-204ENST00000581226 WDR70Q9NW82 654 aa11.33□□□□□ -0.6
SMCHD1-204ENST00000581226 TMC2Q8TDI7 906 aa11.31□□□□□ -0.6
SMCHD1-204ENST00000581226 LARP6Q9BRS8 491 aaKnown RBP11.31□□□□□ -0.6
SMCHD1-204ENST00000581226 CRISPLD2Q9H0B8 497 aa11.31□□□□□ -0.6
SMCHD1-204ENST00000581226 GPHNQ9NQX3 736 aaPredicted RBP11.29□□□□□ -0.6
SMCHD1-204ENST00000581226 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.29□□□□□ -0.6
SMCHD1-204ENST00000581226 SLAIN1Q8ND83 568 aa11.28□□□□□ -0.6
SMCHD1-204ENST00000581226 DDX27Q96GQ7 796 aaKnown RBP11.27□□□□□ -0.61
SMCHD1-204ENST00000581226 TMEM92Q6UXU6 159 aa11.26□□□□□ -0.61
SMCHD1-204ENST00000581226 CDAN1Q8IWY9 1227 aa11.26□□□□□ -0.61
SMCHD1-204ENST00000581226 C2orf72A6NCS6 295 aa11.25□□□□□ -0.61
SMCHD1-204ENST00000581226 MFSD10Q14728 455 aa11.25□□□□□ -0.61
SMCHD1-204ENST00000581226 KIF3CO14782 793 aa11.23□□□□□ -0.61
SMCHD1-204ENST00000581226 DSG2Q14126 1118 aa11.22□□□□□ -0.61
SMCHD1-204ENST00000581226 PPP1R15BQ5SWA1 713 aa11.22□□□□□ -0.61
SMCHD1-204ENST00000581226 FOXK1P85037 733 aa11.21□□□□□ -0.61
SMCHD1-204ENST00000581226 ST18O60284 1047 aa11.2□□□□□ -0.62
SMCHD1-204ENST00000581226 E2F4Q16254 413 aa11.19□□□□□ -0.62
SMCHD1-204ENST00000581226 PLPP6Q8IY26 295 aa11.18□□□□□ -0.62
SMCHD1-204ENST00000581226 P3H3Q8IVL6 736 aa11.16□□□□□ -0.62
SMCHD1-204ENST00000581226 KCNV2Q8TDN2 545 aa11.14□□□□□ -0.63
SMCHD1-204ENST00000581226 CAMK2BQ13554 666 aa11.12□□□□□ -0.63
SMCHD1-204ENST00000581226 ARHGEF1Q92888 912 aaKnown RBP11.08□□□□□ -0.64
SMCHD1-204ENST00000581226 EMILIN3Q9NT22 766 aa11.07□□□□□ -0.64
SMCHD1-204ENST00000581226 SNPHO15079 494 aa11.05□□□□□ -0.64
SMCHD1-204ENST00000581226 BCANQ96GW7 911 aa11.05□□□□□ -0.64
SMCHD1-204ENST00000581226 NBR1Q14596 966 aa11.04□□□□□ -0.64
SMCHD1-204ENST00000581226 UPF1Q92900 1129 aaKnown RBP eCLIP11.04□□□□□ -0.64
SMCHD1-204ENST00000581226 MARVELD3Q96A59 401 aa11.03□□□□□ -0.64
SMCHD1-204ENST00000581226 ARIH1Q9Y4X5 557 aaPredicted RBP11.03□□□□□ -0.64
SMCHD1-204ENST00000581226 DPYSL4O14531 572 aa11.02□□□□□ -0.65
SMCHD1-204ENST00000581226 SLC34A2O95436 690 aa11.02□□□□□ -0.65
SMCHD1-204ENST00000581226 MAP3K9P80192 1104 aa11.02□□□□□ -0.65
SMCHD1-204ENST00000581226 OXER1Q8TDS5 423 aa11.01□□□□□ -0.65
SMCHD1-204ENST00000581226 TBC1D12O60347 775 aa11□□□□□ -0.65
SMCHD1-204ENST00000581226 DOK7Q18PE1 504 aa11□□□□□ -0.65
SMCHD1-204ENST00000581226 PTCD2Q8WV60 388 aaKnown RBP11□□□□□ -0.65
SMCHD1-204ENST00000581226 HOXB3P14651 431 aaPredicted RBP10.98□□□□□ -0.65
SMCHD1-204ENST00000581226 MMRN1Q13201 1228 aa10.97□□□□□ -0.65
SMCHD1-204ENST00000581226 SPNS2Q8IVW8 549 aa10.97□□□□□ -0.65
SMCHD1-204ENST00000581226 ZNF710Q8N1W2 664 aa10.97□□□□□ -0.65
SMCHD1-204ENST00000581226 RIMBP2O15034 1052 aa10.96□□□□□ -0.65
SMCHD1-204ENST00000581226 PCDHGA4Q9Y5G9 962 aa10.96□□□□□ -0.65
SMCHD1-204ENST00000581226 SPDYE16A6NNV3 312 aaPredicted RBP10.94□□□□□ -0.66
SMCHD1-204ENST00000581226 PDIA6Q15084 440 aa10.94□□□□□ -0.66
SMCHD1-204ENST00000581226 SEMA3EO15041 775 aa10.93□□□□□ -0.66
SMCHD1-204ENST00000581226 EVI5O60447 810 aa10.93□□□□□ -0.66
SMCHD1-204ENST00000581226 EMP3P54852 163 aa10.92□□□□□ -0.66
SMCHD1-204ENST00000581226 ZSWIM6Q9HCJ5 1215 aa10.92□□□□□ -0.66
SMCHD1-204ENST00000581226 ARSIQ5FYB1 569 aa10.91□□□□□ -0.66
SMCHD1-204ENST00000581226 ZNF316A6NFI3 1004 aaPredicted RBP10.9□□□□□ -0.66
SMCHD1-204ENST00000581226 GPR153Q6NV75 609 aa10.89□□□□□ -0.67
SMCHD1-204ENST00000581226 KHSRPQ92945 711 aaKnown RBP eCLIP10.89□□□□□ -0.678e-8■■■□□ 17.7
SMCHD1-204ENST00000581226 TESPA1A2RU30 521 aaPredicted RBP10.87□□□□□ -0.67
SMCHD1-204ENST00000581226 NUDT7P0C024 238 aa10.87□□□□□ -0.67
SMCHD1-204ENST00000581226 ANO8Q9HCE9 1232 aaPredicted RBP10.86□□□□□ -0.67
SMCHD1-204ENST00000581226 MLLT3P42568 568 aaPredicted RBP10.85□□□□□ -0.67
SMCHD1-204ENST00000581226 FAM205CA6NFA0 338 aa10.84□□□□□ -0.67
SMCHD1-204ENST00000581226 TULP1O00294 542 aaPredicted RBP10.84□□□□□ -0.67
SMCHD1-204ENST00000581226 HOXB1P14653 301 aaPredicted RBP10.84□□□□□ -0.67
SMCHD1-204ENST00000581226 SMYD5Q6GMV2 418 aa10.84□□□□□ -0.67
SMCHD1-204ENST00000581226 KDM4FA0A1W2PPD8 638 aa10.83□□□□□ -0.68
SMCHD1-204ENST00000581226 GRXCR2A6NFK2 248 aa10.83□□□□□ -0.68
SMCHD1-204ENST00000581226 PTGER2P43116 358 aa10.83□□□□□ -0.68
SMCHD1-204ENST00000581226 DDX12PQ92771 950 aa10.83□□□□□ -0.68
SMCHD1-204ENST00000581226 HS3ST6Q96QI5 342 aa10.83□□□□□ -0.68
SMCHD1-204ENST00000581226 POTEB3A0JP26 581 aa10.79□□□□□ -0.68
SMCHD1-204ENST00000581226 POTEBQ6S5H4 581 aa10.79□□□□□ -0.68
SMCHD1-204ENST00000581226 KRTAP3-3Q9BYR6 98 aa10.78□□□□□ -0.68
SMCHD1-204ENST00000581226 KRTAP3-2Q9BYR7 98 aa10.78□□□□□ -0.68
SMCHD1-204ENST00000581226 LHX6Q9UPM6 363 aa10.78□□□□□ -0.68
SMCHD1-204ENST00000581226 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.77□□□□□ -0.69
SMCHD1-204ENST00000581226 PHF14O94880 888 aa10.76□□□□□ -0.69
SMCHD1-204ENST00000581226 OSBPP22059 807 aa10.75□□□□□ -0.69
SMCHD1-204ENST00000581226 LMOD2Q6P5Q4 547 aa10.75□□□□□ -0.69
SMCHD1-204ENST00000581226 ZNF454Q8N9F8 522 aa10.75□□□□□ -0.69
SMCHD1-204ENST00000581226 JPH4Q96JJ6 628 aa10.75□□□□□ -0.69
SMCHD1-204ENST00000581226 PCDHGA10Q9Y5H3 936 aa10.75□□□□□ -0.69
SMCHD1-204ENST00000581226 RBM26Q5T8P6 1007 aaKnown RBP10.74□□□□□ -0.69
SMCHD1-204ENST00000581226 EPAS1Q99814 870 aa10.74□□□□□ -0.69
SMCHD1-204ENST00000581226 FOSBP53539 338 aa10.73□□□□□ -0.69
SMCHD1-204ENST00000581226 PSDA5PKW4 1024 aaPredicted RBP10.72□□□□□ -0.69
SMCHD1-204ENST00000581226 TYW1BQ6NUM6 668 aa10.72□□□□□ -0.69
SMCHD1-204ENST00000581226 ERBB3P21860 1342 aa10.71□□□□□ -0.69
SMCHD1-204ENST00000581226 PPP4R3BQ5MIZ7 849 aa10.7□□□□□ -0.7
SMCHD1-204ENST00000581226 ZDHHC16Q969W1 377 aa10.7□□□□□ -0.7
SMCHD1-204ENST00000581226 RBM33Q96EV2 1170 aaKnown RBP10.7□□□□□ -0.7
SMCHD1-204ENST00000581226 FBXW7Q969H0 707 aa10.69□□□□□ -0.7
SMCHD1-204ENST00000581226 PRIM1P49642 420 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms