RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 CDC42BPAQ5VT25 1732 aa24.17■■□□□ 1.46
SS18-216ENST00000580751 GPATCH8Q9UKJ3 1502 aaKnown RBP24.15■■□□□ 1.46
SS18-216ENST00000580751 ITSN2Q9NZM3 1697 aa24.15■■□□□ 1.46
SS18-216ENST00000580751 KDM6BO15054 1643 aa24.14■■□□□ 1.46
SS18-216ENST00000580751 CDC42BPBQ9Y5S2 1711 aa24.14■■□□□ 1.45
SS18-216ENST00000580751 EFCAB2Q5VUJ9 269 aa24.13■■□□□ 1.45
SS18-216ENST00000580751 AKNAQ7Z591 1439 aa24.1■■□□□ 1.45
SS18-216ENST00000580751 ADGRL1O94910 1474 aa24.07■■□□□ 1.44
SS18-216ENST00000580751 CFDP1Q9UEE9 299 aaPredicted RBP24.07■■□□□ 1.44
SS18-216ENST00000580751 MYOM3Q5VTT5 1437 aa24.04■■□□□ 1.44
SS18-216ENST00000580751 COL17A1Q9UMD9 1497 aaPredicted RBP24.04■■□□□ 1.44
SS18-216ENST00000580751 DENND4BO75064 1496 aaPredicted RBP24.02■■□□□ 1.44
SS18-216ENST00000580751 ABCC1P33527 1531 aa24.02■■□□□ 1.44
SS18-216ENST00000580751 SAMD9LQ8IVG5 1584 aa24.02■■□□□ 1.44
SS18-216ENST00000580751 PLEKHH2Q8IVE3 1493 aa24.01■■□□□ 1.43
SS18-216ENST00000580751 SCAPERQ9BY12 1400 aa24.01■■□□□ 1.43
SS18-216ENST00000580751 ZNF777Q9ULD5 760 aaPredicted RBP24■■□□□ 1.43
SS18-216ENST00000580751 MIA2Q96PC5 1412 aa24■■□□□ 1.43
SS18-216ENST00000580751 POGZQ7Z3K3 1410 aa23.97■■□□□ 1.43
SS18-216ENST00000580751 KIAA1107Q9UPP5 1409 aa23.97■■□□□ 1.43
SS18-216ENST00000580751 RICTORQ6R327 1708 aa23.96■■□□□ 1.43
SS18-216ENST00000580751 FRMPD1Q5SYB0 1578 aa23.95■■□□□ 1.43
SS18-216ENST00000580751 SYCP2Q9BX26 1530 aa23.95■■□□□ 1.43
SS18-216ENST00000580751 CAMSAP2Q08AD1 1489 aa23.95■■□□□ 1.42
SS18-216ENST00000580751 ZNF518AQ6AHZ1 1483 aa23.94■■□□□ 1.42
SS18-216ENST00000580751 RAPGEF3O95398 923 aa23.93■■□□□ 1.42
SS18-216ENST00000580751 PPARGC1BQ86YN6 1023 aaKnown RBP23.93■■□□□ 1.42
SS18-216ENST00000580751 ARHGEF12Q9NZN5 1544 aa23.93■■□□□ 1.42
SS18-216ENST00000580751 FGD6Q6ZV73 1430 aa23.93■■□□□ 1.42
SS18-216ENST00000580751 ZMYM4Q5VZL5 1548 aa23.91■■□□□ 1.42
SS18-216ENST00000580751 ZNF644Q9H582 1327 aaPredicted RBP23.9■■□□□ 1.42
SS18-216ENST00000580751 PTPN23Q9H3S7 1636 aa23.89■■□□□ 1.42
SS18-216ENST00000580751 KDM5CP41229 1560 aa23.89■■□□□ 1.41
SS18-216ENST00000580751 TRAPPC8Q9Y2L5 1435 aa23.88■■□□□ 1.41
SS18-216ENST00000580751 MBD5Q9P267 1494 aa23.87■■□□□ 1.41
SS18-216ENST00000580751 HNRNPMP52272 730 aaKnown RBP eCLIP23.86■■□□□ 1.41
SS18-216ENST00000580751 TCOF1Q13428 1488 aaKnown RBP23.86■■□□□ 1.41
SS18-216ENST00000580751 MAGI2Q86UL8 1455 aa23.86■■□□□ 1.41
SS18-216ENST00000580751 ARHGEF5Q12774 1597 aa23.85■■□□□ 1.41
SS18-216ENST00000580751 CCDC141Q6ZP82 1450 aa23.84■■□□□ 1.41
SS18-216ENST00000580751 AFAP1Q8N556 730 aa23.84■■□□□ 1.41
SS18-216ENST00000580751 HECW2Q9P2P5 1572 aa23.83■■□□□ 1.41
SS18-216ENST00000580751 RSPH4AQ5TD94 716 aa23.83■■□□□ 1.41
SS18-216ENST00000580751 ZFYVE16Q7Z3T8 1539 aa23.82■■□□□ 1.4
SS18-216ENST00000580751 MLH3Q9UHC1 1453 aa23.81■■□□□ 1.4
SS18-216ENST00000580751 ARHGEF40Q8TER5 1519 aa23.81■■□□□ 1.4
SS18-216ENST00000580751 SPAG9O60271 1321 aaKnown RBP23.78■■□□□ 1.4
SS18-216ENST00000580751 INO80Q9ULG1 1556 aaPredicted RBP23.77■■□□□ 1.4
SS18-216ENST00000580751 ATP7AQ04656 1500 aa23.75■■□□□ 1.39
SS18-216ENST00000580751 DNMT1P26358 1616 aaKnown RBP23.75■■□□□ 1.39
SS18-216ENST00000580751 FAM50AQ14320 339 aaKnown RBP23.75■■□□□ 1.39
SS18-216ENST00000580751 MYT1LQ9UL68 1186 aa23.75■■□□□ 1.39
SS18-216ENST00000580751 YEATS2Q9ULM3 1422 aa23.75■■□□□ 1.39
SS18-216ENST00000580751 KIDINS220Q9ULH0 1771 aa23.74■■□□□ 1.39
SS18-216ENST00000580751 RRBP1Q9P2E9 1410 aaKnown RBP23.74■■□□□ 1.39
SS18-216ENST00000580751 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.73■■□□□ 1.39
SS18-216ENST00000580751 RTEL1-TNFRSF6BF6WH68 1400 aa23.73■■□□□ 1.39
SS18-216ENST00000580751 TSPY4P0CV99 314 aa23.72■■□□□ 1.39
SS18-216ENST00000580751 TSPY10P0CW01 314 aa23.72■■□□□ 1.39
SS18-216ENST00000580751 SHANK2Q9UPX8 1470 aa23.72■■□□□ 1.39
SS18-216ENST00000580751 CROCC2H7BZ55 1655 aa23.72■■□□□ 1.39
SS18-216ENST00000580751 ABCA6Q8N139 1617 aa23.71■■□□□ 1.39
SS18-216ENST00000580751 DIP2CQ9Y2E4 1556 aa23.71■■□□□ 1.39
SS18-216ENST00000580751 MAST1Q9Y2H9 1570 aa23.71■■□□□ 1.39
SS18-216ENST00000580751 DAPK1P53355 1430 aa23.71■■□□□ 1.39
SS18-216ENST00000580751 ABCC5O15440 1437 aa23.7■■□□□ 1.38
SS18-216ENST00000580751 ATP10AO60312 1499 aa23.69■■□□□ 1.38
SS18-216ENST00000580751 C9orf84Q5VXU9 1444 aa23.69■■□□□ 1.38
SS18-216ENST00000580751 REREQ9P2R6 1566 aa23.66■■□□□ 1.38
SS18-216ENST00000580751 PLXNC1O60486 1568 aa23.64■■□□□ 1.37
SS18-216ENST00000580751 ADGBQ8N7X0 1667 aa23.64■■□□□ 1.37
SS18-216ENST00000580751 A2MP01023 1474 aa23.6■■□□□ 1.37
SS18-216ENST00000580751 ADGRL2O95490 1459 aa23.58■■□□□ 1.37
SS18-216ENST00000580751 AGLP35573 1532 aa23.58■■□□□ 1.36
SS18-216ENST00000580751 ANKRD30AQ9BXX3 1397 aa23.57■■□□□ 1.36
SS18-216ENST00000580751 ARID4BQ4LE39 1312 aaPredicted RBP23.57■■□□□ 1.36
SS18-216ENST00000580751 SIGLEC1Q9BZZ2 1709 aa23.56■■□□□ 1.36
SS18-216ENST00000580751 DHX29Q7Z478 1369 aaKnown RBP23.54■■□□□ 1.36
SS18-216ENST00000580751 PTPRKQ15262 1439 aa23.54■■□□□ 1.36
SS18-216ENST00000580751 CHIC2Q9UKJ5 165 aa23.54■■□□□ 1.36
SS18-216ENST00000580751 DUOX2Q9NRD8 1548 aa23.54■■□□□ 1.36
SS18-216ENST00000580751 KIF15Q9NS87 1388 aa23.53■■□□□ 1.36
SS18-216ENST00000580751 NCOA1Q15788 1441 aa23.53■■□□□ 1.36
SS18-216ENST00000580751 ITGAEP38570 1179 aa23.53■■□□□ 1.36
SS18-216ENST00000580751 ROCK1Q13464 1354 aa23.52■■□□□ 1.36
SS18-216ENST00000580751 BCORL1Q5H9F3 1711 aa23.5■■□□□ 1.35
SS18-216ENST00000580751 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
SS18-216ENST00000580751 RRP7BPQ9NSQ0 103 aa23.48■■□□□ 1.35
SS18-216ENST00000580751 ERBINQ96RT1 1412 aa23.48■■□□□ 1.35
SS18-216ENST00000580751 EIF2AK4Q9P2K8 1649 aaKnown RBP23.48■■□□□ 1.35
SS18-216ENST00000580751 ADAMTSL3P82987 1691 aa23.44■■□□□ 1.34
SS18-216ENST00000580751 MLECQ14165 292 aa23.42■■□□□ 1.34
SS18-216ENST00000580751 KIF3BO15066 747 aa23.41■■□□□ 1.34
SS18-216ENST00000580751 ANKRD50Q9ULJ7 1429 aa23.41■■□□□ 1.34
SS18-216ENST00000580751 RNF17Q9BXT8 1623 aaKnown RBP23.4■■□□□ 1.34
SS18-216ENST00000580751 MADDQ8WXG6 1647 aa23.39■■□□□ 1.33
SS18-216ENST00000580751 FER1L4A9Z1Z3 1794 aa23.38■■□□□ 1.33
SS18-216ENST00000580751 KDM4FA0A1W2PPD8 638 aa23.37■■□□□ 1.33
SS18-216ENST00000580751 FAM135AQ9P2D6 1515 aa23.37■■□□□ 1.33
SS18-216ENST00000580751 GCC2Q8IWJ2 1684 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms