RNA–Protein interactions for RNA: ENST00000580014.1

RNF43-204, Transcript of ring finger protein 43, humanhuman

TSL 3

Gene RNF43, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-204ENST00000580014 FAM212AQ96EL1 285 aa11.49□□□□□ -0.57
RNF43-204ENST00000580014 CFAP44Q96MT7 982 aa11.49□□□□□ -0.57
RNF43-204ENST00000580014 DISP1Q96F81 1524 aa11.49□□□□□ -0.57
RNF43-204ENST00000580014 PRG4Q92954 1404 aaPredicted RBP11.48□□□□□ -0.57
RNF43-204ENST00000580014 CLIP1P30622 1438 aa11.47□□□□□ -0.57
RNF43-204ENST00000580014 CEP162Q5TB80 1403 aa11.47□□□□□ -0.57
RNF43-204ENST00000580014 SPRYD3Q8NCJ5 442 aa11.47□□□□□ -0.57
RNF43-204ENST00000580014 RNF25Q96BH1 459 aaPredicted RBP11.47□□□□□ -0.57
RNF43-204ENST00000580014 SAMD9Q5K651 1589 aa11.46□□□□□ -0.57
RNF43-204ENST00000580014 EFCAB5A4FU69 1503 aa11.46□□□□□ -0.57
RNF43-204ENST00000580014 ARHGAP35Q9NRY4 1499 aa11.46□□□□□ -0.57
RNF43-204ENST00000580014 HS6ST3Q8IZP7 471 aa11.46□□□□□ -0.57
RNF43-204ENST00000580014 CARMIL2Q6F5E8 1435 aa11.45□□□□□ -0.58
RNF43-204ENST00000580014 KIAA0556O60303 1618 aa11.43□□□□□ -0.58
RNF43-204ENST00000580014 RASEFQ8IZ41 740 aa11.43□□□□□ -0.58
RNF43-204ENST00000580014 TAOK2Q9UL54 1235 aa11.43□□□□□ -0.58
RNF43-204ENST00000580014 RIOK3O14730 519 aaKnown RBP11.42□□□□□ -0.58
RNF43-204ENST00000580014 ERCC6L2Q5T890 1561 aa11.41□□□□□ -0.58
RNF43-204ENST00000580014 ARAP1Q96P48 1450 aa11.41□□□□□ -0.58
RNF43-204ENST00000580014 CHRM1P11229 460 aaPredicted RBP11.41□□□□□ -0.58
RNF43-204ENST00000580014 DNAJC5Q9H3Z4 198 aa11.41□□□□□ -0.58
RNF43-204ENST00000580014 ARHGEF11O15085 1522 aa11.4□□□□□ -0.59
RNF43-204ENST00000580014 PTPRGP23470 1445 aa11.38□□□□□ -0.59
RNF43-204ENST00000580014 FHOD3Q2V2M9 1422 aa11.38□□□□□ -0.59
RNF43-204ENST00000580014 RANGAP1P46060 587 aaPredicted RBP11.37□□□□□ -0.59
RNF43-204ENST00000580014 P3H3Q8IVL6 736 aa11.37□□□□□ -0.59
RNF43-204ENST00000580014 FMN1Q68DA7 1419 aa11.36□□□□□ -0.59
RNF43-204ENST00000580014 KDM2AQ9Y2K7 1162 aa11.36□□□□□ -0.59
RNF43-204ENST00000580014 VGFO15240 615 aaPredicted RBP11.35□□□□□ -0.59
RNF43-204ENST00000580014 BCANQ96GW7 911 aa11.34□□□□□ -0.59
RNF43-204ENST00000580014 VPS8Q8N3P4 1428 aa11.34□□□□□ -0.59
RNF43-204ENST00000580014 UHRF1BP1LA0JNW5 1464 aa11.33□□□□□ -0.6
RNF43-204ENST00000580014 TSHZ2Q9NRE2 1034 aa11.33□□□□□ -0.6
RNF43-204ENST00000580014 RIMBP3CA6NJZ7 1639 aa11.33□□□□□ -0.6
RNF43-204ENST00000580014 RIMBP3BA6NNM3 1639 aa11.33□□□□□ -0.6
RNF43-204ENST00000580014 RIMBP3Q9UFD9 1639 aa11.33□□□□□ -0.6
RNF43-204ENST00000580014 CASKIN1Q8WXD9 1431 aa11.33□□□□□ -0.6
RNF43-204ENST00000580014 UACAQ9BZF9 1416 aa11.32□□□□□ -0.6
RNF43-204ENST00000580014 ABCA8O94911 1581 aa11.32□□□□□ -0.6
RNF43-204ENST00000580014 CHADLQ6NUI6 762 aa11.31□□□□□ -0.6
RNF43-204ENST00000580014 SGIP1Q9BQI5 828 aa11.31□□□□□ -0.6
RNF43-204ENST00000580014 PLB1Q6P1J6 1458 aa11.31□□□□□ -0.6
RNF43-204ENST00000580014 STK25O00506 426 aa11.29□□□□□ -0.6
RNF43-204ENST00000580014 PYGBP11216 843 aa11.29□□□□□ -0.6
RNF43-204ENST00000580014 NUP153P49790 1475 aaKnown RBP11.28□□□□□ -0.6
RNF43-204ENST00000580014 FYCO1Q9BQS8 1478 aa11.28□□□□□ -0.6
RNF43-204ENST00000580014 NKX1-1Q15270 411 aaPredicted RBP11.28□□□□□ -0.6
RNF43-204ENST00000580014 ABCC2Q92887 1545 aa11.28□□□□□ -0.6
RNF43-204ENST00000580014 FARP1Q9Y4F1 1045 aaPredicted RBP11.27□□□□□ -0.61
RNF43-204ENST00000580014 KDM5BQ9UGL1 1544 aa11.26□□□□□ -0.61
RNF43-204ENST00000580014 CYB5RLQ6IPT4 315 aa11.26□□□□□ -0.61
RNF43-204ENST00000580014 RAPGEF6Q8TEU7 1601 aa11.26□□□□□ -0.61
RNF43-204ENST00000580014 MAP3K1Q13233 1512 aa11.25□□□□□ -0.61
RNF43-204ENST00000580014 PCF11O94913 1555 aaKnown RBP11.24□□□□□ -0.61
RNF43-204ENST00000580014 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.24□□□□□ -0.61
RNF43-204ENST00000580014 ZFP91Q96JP5 570 aaPredicted RBP11.24□□□□□ -0.61
RNF43-204ENST00000580014 ATP10BO94823 1461 aa11.24□□□□□ -0.61
RNF43-204ENST00000580014 EPRSP07814 1512 aaKnown RBP11.24□□□□□ -0.61
RNF43-204ENST00000580014 ADCY10Q96PN6 1610 aa11.24□□□□□ -0.61
RNF43-204ENST00000580014 TTBK1Q5TCY1 1321 aaPredicted RBP11.23□□□□□ -0.61
RNF43-204ENST00000580014 HECW1Q76N89 1606 aa11.23□□□□□ -0.61
RNF43-204ENST00000580014 GTPBP6O43824 516 aaPredicted RBP11.22□□□□□ -0.61
RNF43-204ENST00000580014 CCDC18Q5T9S5 1454 aa11.22□□□□□ -0.61
RNF43-204ENST00000580014 BCL11BQ9C0K0 894 aaPredicted RBP11.22□□□□□ -0.61
RNF43-204ENST00000580014 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
RNF43-204ENST00000580014 STK24Q9Y6E0 443 aa11.22□□□□□ -0.61
RNF43-204ENST00000580014 PRKAR2AP13861 404 aaKnown RBP11.21□□□□□ -0.61
RNF43-204ENST00000580014 FXR2P51116 673 aaKnown RBP eCLIP11.21□□□□□ -0.61
RNF43-204ENST00000580014 POTEHQ6S545 545 aa11.19□□□□□ -0.62
RNF43-204ENST00000580014 ZNF467Q7Z7K2 595 aaPredicted RBP11.18□□□□□ -0.62
RNF43-204ENST00000580014 TIAM1Q13009 1591 aa11.17□□□□□ -0.62
RNF43-204ENST00000580014 CDK11AQ9UQ88 783 aaPredicted RBP11.17□□□□□ -0.62
RNF43-204ENST00000580014 CDK13Q14004 1512 aaKnown RBP11.17□□□□□ -0.62
RNF43-204ENST00000580014 RYDENQ9NUL5 291 aaKnown RBP11.16□□□□□ -0.62
RNF43-204ENST00000580014 ATP1B4Q9UN42 357 aaPredicted RBP11.16□□□□□ -0.62
RNF43-204ENST00000580014 LRRIQ1Q96JM4 1722 aa11.15□□□□□ -0.62
RNF43-204ENST00000580014 MAPKBP1O60336 1514 aa11.15□□□□□ -0.62
RNF43-204ENST00000580014 PLEKHD1A6NEE1 506 aa11.15□□□□□ -0.62
RNF43-204ENST00000580014 KANK4Q5T7N3 995 aaPredicted RBP11.15□□□□□ -0.62
RNF43-204ENST00000580014 ZCCHC11Q5TAX3 1644 aaKnown RBP11.15□□□□□ -0.62
RNF43-204ENST00000580014 LRRC9Q6ZRR7 1453 aa11.14□□□□□ -0.63
RNF43-204ENST00000580014 CCDC61Q9Y6R9 512 aa11.14□□□□□ -0.63
RNF43-204ENST00000580014 TROQ12816 1431 aaPredicted RBP11.14□□□□□ -0.63
RNF43-204ENST00000580014 ASXL2Q76L83 1435 aa11.14□□□□□ -0.63
RNF43-204ENST00000580014 MAGI3Q5TCQ9 1506 aa11.14□□□□□ -0.63
RNF43-204ENST00000580014 CFAP43Q8NDM7 1665 aa11.14□□□□□ -0.63
RNF43-204ENST00000580014 ARID3CA6NKF2 412 aa11.13□□□□□ -0.63
RNF43-204ENST00000580014 WDR7Q9Y4E6 1490 aa11.12□□□□□ -0.63
RNF43-204ENST00000580014 PDAP1Q13442 181 aaKnown RBP11.11□□□□□ -0.63
RNF43-204ENST00000580014 CHRDL2Q6WN34 429 aa11.11□□□□□ -0.63
RNF43-204ENST00000580014 MTUS2Q5JR59 1369 aa11.11□□□□□ -0.63
RNF43-204ENST00000580014 EHBP1L1Q8N3D4 1523 aa11.1□□□□□ -0.63
RNF43-204ENST00000580014 PAK3O75914 559 aaPredicted RBP11.09□□□□□ -0.63
RNF43-204ENST00000580014 PIP4P2Q8N4L2 257 aa11.09□□□□□ -0.63
RNF43-204ENST00000580014 ZNF579Q8NAF0 562 aaKnown RBP11.09□□□□□ -0.63
RNF43-204ENST00000580014 PCDHB8Q9UN66 801 aa11.09□□□□□ -0.63
RNF43-204ENST00000580014 PCDHB13Q9Y5F0 798 aa11.09□□□□□ -0.63
RNF43-204ENST00000580014 ABCC10Q5T3U5 1492 aa11.08□□□□□ -0.64
RNF43-204ENST00000580014 GLI2P10070 1586 aa11.07□□□□□ -0.64
RNF43-204ENST00000580014 NCOA2Q15596 1464 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms