RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 BCL11BQ9C0K0 894 aaPredicted RBP12.78□□□□□ -0.36
COPS3-216ENST00000579716 MFRPQ9BY79 579 aa12.77□□□□□ -0.37
COPS3-216ENST00000579716 ERBB3P21860 1342 aa12.77□□□□□ -0.37
COPS3-216ENST00000579716 VARS2Q5ST30 1063 aaKnown RBP12.75□□□□□ -0.37
COPS3-216ENST00000579716 ZSWIM6Q9HCJ5 1215 aa12.73□□□□□ -0.37
COPS3-216ENST00000579716 NLRP6P59044 892 aa12.72□□□□□ -0.37
COPS3-216ENST00000579716 PKD2Q13563 968 aa12.72□□□□□ -0.37
COPS3-216ENST00000579716 KHSRPQ92945 711 aaKnown RBP eCLIP12.72□□□□□ -0.37
COPS3-216ENST00000579716 KIF3CO14782 793 aa12.71□□□□□ -0.37
COPS3-216ENST00000579716 ARSIQ5FYB1 569 aa12.7□□□□□ -0.38
COPS3-216ENST00000579716 STK24Q9Y6E0 443 aa12.7□□□□□ -0.38
COPS3-216ENST00000579716 ZNF687Q8N1G0 1237 aa12.69□□□□□ -0.38
COPS3-216ENST00000579716 RIMBP2O15034 1052 aa12.68□□□□□ -0.38
COPS3-216ENST00000579716 RGL2O15211 777 aa12.67□□□□□ -0.38
COPS3-216ENST00000579716 STK25O00506 426 aa12.63□□□□□ -0.39
COPS3-216ENST00000579716 ECM2O94769 699 aaPredicted RBP12.63□□□□□ -0.39
COPS3-216ENST00000579716 C2orf72A6NCS6 295 aa12.62□□□□□ -0.39
COPS3-216ENST00000579716 PPP1R37O75864 691 aa12.6□□□□□ -0.39
COPS3-216ENST00000579716 ZNF316A6NFI3 1004 aaPredicted RBP12.57□□□□□ -0.4
COPS3-216ENST00000579716 POTEEQ6S8J3 1075 aa12.56□□□□□ -0.4
COPS3-216ENST00000579716 TAOK2Q9UL54 1235 aa12.55□□□□□ -0.4
COPS3-216ENST00000579716 RNF166Q96A37 237 aaPredicted RBP12.53□□□□□ -0.4
COPS3-216ENST00000579716 MYT1LQ9UL68 1186 aa12.51□□□□□ -0.41
COPS3-216ENST00000579716 SLC34A2O95436 690 aa12.5□□□□□ -0.41
COPS3-216ENST00000579716 NUDT7P0C024 238 aa12.5□□□□□ -0.41
COPS3-216ENST00000579716 KDM4FA0A1W2PPD8 638 aa12.48□□□□□ -0.41
COPS3-216ENST00000579716 LHX6Q9UPM6 363 aa12.48□□□□□ -0.41
COPS3-216ENST00000579716 PCDHGA4Q9Y5G9 962 aa12.48□□□□□ -0.41
COPS3-216ENST00000579716 ANKRD13DQ6ZTN6 518 aa12.46□□□□□ -0.41
COPS3-216ENST00000579716 LSM11P83369 360 aaKnown RBP eCLIP12.45□□□□□ -0.42
COPS3-216ENST00000579716 AXIN2Q9Y2T1 843 aa12.43□□□□□ -0.42
COPS3-216ENST00000579716 TMC2Q8TDI7 906 aa12.39□□□□□ -0.43
COPS3-216ENST00000579716 PTGER2P43116 358 aa12.35□□□□□ -0.43
COPS3-216ENST00000579716 PTCD2Q8WV60 388 aaKnown RBP12.35□□□□□ -0.43
COPS3-216ENST00000579716 PBX2P40425 430 aa12.33□□□□□ -0.44
COPS3-216ENST00000579716 FOXK1P85037 733 aa12.33□□□□□ -0.44
COPS3-216ENST00000579716 HS6ST3Q8IZP7 471 aa12.33□□□□□ -0.44
COPS3-216ENST00000579716 NKX1-1Q15270 411 aaPredicted RBP12.32□□□□□ -0.44
COPS3-216ENST00000579716 DSG2Q14126 1118 aa12.3□□□□□ -0.44
COPS3-216ENST00000579716 PLPP6Q8IY26 295 aa12.3□□□□□ -0.44
COPS3-216ENST00000579716 GPHNQ9NQX3 736 aaPredicted RBP12.3□□□□□ -0.44
COPS3-216ENST00000579716 ARHGAP33O14559 1287 aa12.26□□□□□ -0.45
COPS3-216ENST00000579716 DMRTA1Q5VZB9 504 aa12.26□□□□□ -0.45
COPS3-216ENST00000579716 PSEN2P49810 448 aa12.24□□□□□ -0.45
COPS3-216ENST00000579716 DNAJC5Q9H3Z4 198 aa12.24□□□□□ -0.45
COPS3-216ENST00000579716 HRO43593 1189 aa12.23□□□□□ -0.45
COPS3-216ENST00000579716 ADGRD1Q6QNK2 874 aa12.23□□□□□ -0.45
COPS3-216ENST00000579716 DAXXQ9UER7 740 aaPredicted RBP12.22□□□□□ -0.45
COPS3-216ENST00000579716 CHGAP10645 457 aaKnown RBP12.21□□□□□ -0.45
COPS3-216ENST00000579716 OXER1Q8TDS5 423 aa12.17□□□□□ -0.46
COPS3-216ENST00000579716 PSDA5PKW4 1024 aaPredicted RBP12.16□□□□□ -0.46
COPS3-216ENST00000579716 CRISPLD2Q9H0B8 497 aa12.16□□□□□ -0.46
COPS3-216ENST00000579716 TK2O00142 265 aa12.15□□□□□ -0.46
COPS3-216ENST00000579716 NCKAP5LQ9HCH0 1330 aa12.12□□□□□ -0.47
COPS3-216ENST00000579716 HCSTQ9UBK5 93 aa12.1□□□□□ -0.47
COPS3-216ENST00000579716 PPP4R3BQ5MIZ7 849 aa12.09□□□□□ -0.47
COPS3-216ENST00000579716 UPF1Q92900 1129 aaKnown RBP eCLIP12.08□□□□□ -0.48
COPS3-216ENST00000579716 TBC1D12O60347 775 aa12.07□□□□□ -0.48
COPS3-216ENST00000579716 PLA2G2EQ9NZK7 142 aa12.07□□□□□ -0.48
COPS3-216ENST00000579716 GTPBP6O43824 516 aaPredicted RBP12.06□□□□□ -0.48
COPS3-216ENST00000579716 VPS9D1Q9Y2B5 631 aa12.06□□□□□ -0.48
COPS3-216ENST00000579716 KCNK17Q96T54 332 aa12.05□□□□□ -0.48
COPS3-216ENST00000579716 ANO8Q9HCE9 1232 aaPredicted RBP12.05□□□□□ -0.48
COPS3-216ENST00000579716 PPP1R15BQ5SWA1 713 aa12.04□□□□□ -0.48
COPS3-216ENST00000579716 TTBK1Q5TCY1 1321 aaPredicted RBP12.04□□□□□ -0.48
COPS3-216ENST00000579716 FOSBP53539 338 aa12.02□□□□□ -0.49
COPS3-216ENST00000579716 BHMG1C9JSJ3 638 aaPredicted RBP12.01□□□□□ -0.49
COPS3-216ENST00000579716 KCTD12Q96CX2 325 aaKnown RBP12.01□□□□□ -0.49
COPS3-216ENST00000579716 BCL2L12Q9HB09 334 aa12.01□□□□□ -0.49
COPS3-216ENST00000579716 ZNF454Q8N9F8 522 aa12□□□□□ -0.49
COPS3-216ENST00000579716 MYT1Q01538 1121 aa11.99□□□□□ -0.49
COPS3-216ENST00000579716 SLC4A5Q9BY07 1137 aa11.97□□□□□ -0.49
COPS3-216ENST00000579716 PDE4AP27815 886 aa11.96□□□□□ -0.49
COPS3-216ENST00000579716 ZBED2Q9BTP6 218 aa11.95□□□□□ -0.5
COPS3-216ENST00000579716 ADAM33Q9BZ11 813 aa11.94□□□□□ -0.5
COPS3-216ENST00000579716 EMILIN3Q9NT22 766 aa11.94□□□□□ -0.5
COPS3-216ENST00000579716 EVI5O60447 810 aa11.93□□□□□ -0.5
COPS3-216ENST00000579716 MFSD10Q14728 455 aa11.93□□□□□ -0.5
COPS3-216ENST00000579716 CADPS2Q86UW7 1296 aa11.93□□□□□ -0.5
COPS3-216ENST00000579716 LARP6Q9BRS8 491 aaKnown RBP11.93□□□□□ -0.5
COPS3-216ENST00000579716 RYDENQ9NUL5 291 aaKnown RBP11.92□□□□□ -0.5
COPS3-216ENST00000579716 JPH4Q96JJ6 628 aa11.9□□□□□ -0.5
COPS3-216ENST00000579716 AMER1Q5JTC6 1135 aaPredicted RBP11.89□□□□□ -0.51
COPS3-216ENST00000579716 PTPN5P54829 565 aa11.88□□□□□ -0.51
COPS3-216ENST00000579716 PTPREP23469 700 aa11.87□□□□□ -0.51
COPS3-216ENST00000579716 ZDHHC16Q969W1 377 aa11.87□□□□□ -0.51
COPS3-216ENST00000579716 DDX27Q96GQ7 796 aaKnown RBP11.87□□□□□ -0.51
COPS3-216ENST00000579716 RTN4Q9NQC3 1192 aaKnown RBP11.87□□□□□ -0.51
COPS3-216ENST00000579716 THSD4Q6ZMP0 1018 aa11.86□□□□□ -0.51
COPS3-216ENST00000579716 PCDHGA10Q9Y5H3 936 aa11.86□□□□□ -0.51
COPS3-216ENST00000579716 STAC3Q96MF2 364 aa11.84□□□□□ -0.51
COPS3-216ENST00000579716 COL9A1P20849 921 aa11.83□□□□□ -0.52
COPS3-216ENST00000579716 KCNH8Q96L42 1107 aa11.83□□□□□ -0.52
COPS3-216ENST00000579716 MAP3K9P80192 1104 aa11.81□□□□□ -0.52
COPS3-216ENST00000579716 PROX2Q3B8N5 592 aa11.79□□□□□ -0.52
COPS3-216ENST00000579716 IFFO2Q5TF58 517 aa11.79□□□□□ -0.52
COPS3-216ENST00000579716 WNT2BQ93097 391 aa11.78□□□□□ -0.52
COPS3-216ENST00000579716 MRPL50Q8N5N7 158 aaKnown RBP11.77□□□□□ -0.53
COPS3-216ENST00000579716 CAMK2BQ13554 666 aa11.75□□□□□ -0.53
COPS3-216ENST00000579716 PPP1R3GB7ZBB8 358 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms